SNP Links for Gene (Select 441425) - SNP

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Select item 14912237671.

rs1491223767 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 9:66104045 (GRCh38)
9:43084623 (GRCh37)
Canonical SPDI:: NC_000009.12:66104044:CA:
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.03735/443 (ALFA)
-=0.00419/42 (TOMMO)
HGVS:: NC_000009.12:g.66104045_66104046del, NC_000009.11:g.43084623_43084624del

Select item 14912212982.

rs1491221298 has merged into rs71255981 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAAAAAA>-,AA,AAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 9:66104055 (GRCh38)
9:43084633 (GRCh37)
Canonical SPDI:: NC_000009.12:66104045:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000009.12:66104045:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000009.12:66104045:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000009.12:66104045:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000009.12:66104045:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000009.12:66104045:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000009.12:66104045:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000009.12:66104045:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000009.12:66104045:AAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAAAA=0./0 (ALFA)
-=0.0853/92 (Korea1K)
HGVS:: NC_000009.12:g.66104055_66104072del, NC_000009.12:g.66104057_66104072del, NC_000009.12:g.66104063_66104072del, NC_000009.12:g.66104070_66104072del, NC_000009.12:g.66104071_66104072del, NC_000009.12:g.66104072del, NC_000009.12:g.66104072dup, NC_000009.12:g.66104071_66104072dup, NC_000009.12:g.66104070_66104072dup, NC_000009.11:g.43084633_43084650del, NC_000009.11:g.43084635_43084650del, NC_000009.11:g.43084641_43084650del, NC_000009.11:g.43084648_43084650del, NC_000009.11:g.43084649_43084650del, NC_000009.11:g.43084650del, NC_000009.11:g.43084650dup, NC_000009.11:g.43084649_43084650dup, NC_000009.11:g.43084648_43084650dup

Select item 14909890163.

rs1490989016 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 9:66128086 (GRCh38)
9:43108664 (GRCh37)
Canonical SPDI:: NC_000009.12:66128085:G:
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000017/1 (GnomAD)
HGVS:: NC_000009.12:g.66128086del, NC_000009.11:g.43108664del

Select item 14909750384.

rs1490975038 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:66154781 (GRCh38)
9:43135359 (GRCh37)
Canonical SPDI:: NC_000009.12:66154780:G:A
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.66154781G>A, NC_000009.11:g.43135359G>A

Select item 14908044945.

rs1490804494 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:66105840 (GRCh38)
9:43086418 (GRCh37)
Canonical SPDI:: NC_000009.12:66105839:G:T
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000009.12:g.66105840G>T, NC_000009.11:g.43086418G>T

Select item 14907544366.

rs1490754436 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:66155145 (GRCh38)
9:43135723 (GRCh37)
Canonical SPDI:: NC_000009.12:66155144:T:C
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00008/8 (GnomAD)
HGVS:: NC_000009.12:g.66155145T>C, NC_000009.11:g.43135723T>C

Select item 14905457537.

rs1490545753 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:66124824 (GRCh38)
9:43105402 (GRCh37)
Canonical SPDI:: NC_000009.12:66124823:T:C
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00007/1 (ALFA)
C=0.00004/1 (GnomAD)
C=0.00004/1 (TOMMO)
HGVS:: NC_000009.12:g.66124824T>C, NC_000009.11:g.43105402T>C, XR_001746295.3:n.1382A>G, XR_001746295.2:n.2960A>G, XR_001746295.1:n.1387A>G, XR_001746296.3:n.1382A>G, XR_001746296.2:n.2960A>G, XR_001746296.1:n.1387A>G, NM_001012419.2:c.1052A>G, XR_007061554.1:n.1382A>G, XR_007061555.1:n.1378A>G, XR_007061553.1:n.1382A>G, XR_007061556.1:n.1385A>G

Select item 14905264128.

rs1490526412 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:66153515 (GRCh38)
9:43134093 (GRCh37)
Canonical SPDI:: NC_000009.12:66153514:G:A
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000169/2 (ALFA)
A=0.000044/6 (GnomAD)
A=0.000312/2 (1000Genomes)
HGVS:: NC_000009.12:g.66153515G>A, NC_000009.11:g.43134093G>A

Select item 14905024899.

rs1490502489 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 9:66128771 (GRCh38)
9:43109349 (GRCh37)
Canonical SPDI:: NC_000009.12:66128770:C:G
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00002/2 (GnomAD)
HGVS:: NC_000009.12:g.66128771C>G, NC_000009.11:g.43109349C>G

Select item 149048624010.

rs1490486240 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:66153054 (GRCh38)
9:43133632 (GRCh37)
Canonical SPDI:: NC_000009.12:66153053:C:T
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.66153054C>T, NC_000009.11:g.43133632C>T, XR_001746295.3:n.131G>A, XR_001746295.2:n.1709G>A, XR_001746295.1:n.136G>A, XR_001746296.3:n.131G>A, XR_001746296.2:n.1709G>A, XR_001746296.1:n.136G>A, XR_007061554.1:n.131G>A, XR_007061555.1:n.130G>A, XR_007061553.1:n.131G>A, XR_007061556.1:n.134G>A

Select item 149044609011.

rs1490446090 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:66128034 (GRCh38)
9:43108612 (GRCh37)
Canonical SPDI:: NC_000009.12:66128033:G:T
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.00001/1 (GnomAD)
HGVS:: NC_000009.12:g.66128034G>T, NC_000009.11:g.43108612G>T

Select item 149039743112.

rs1490397431 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TT [Show Flanks]
Chromosome:: 9:66120939 (GRCh38)
9:43101518 (GRCh37)
Canonical SPDI:: NC_000009.12:66120939:TT:TTTT
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: TT=0.000009/1 (GnomAD)
HGVS:: NC_000009.12:g.66120940_66120941dup, NC_000009.11:g.43101518_43101519dup

Select item 149021612613.

rs1490216126 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:66154347 (GRCh38)
9:43134925 (GRCh37)
Canonical SPDI:: NC_000009.12:66154346:G:A
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00088/15 (TOMMO)
A=0.0024/7 (KOREAN)
A=0.00274/5 (Korea1K)
HGVS:: NC_000009.12:g.66154347G>A, NC_000009.11:g.43134925G>A

Select item 149017572814.

rs1490175728 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:66125636 (GRCh38)
9:43106214 (GRCh37)
Canonical SPDI:: NC_000009.12:66125635:G:A
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.00008/1 (ALFA)
HGVS:: NC_000009.12:g.66125636G>A, NC_000009.11:g.43106214G>A

Select item 149006996815.

rs1490069968 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 9:66127966 (GRCh38)
9:43108544 (GRCh37)
Canonical SPDI:: NC_000009.12:66127965:T:C,NC_000009.12:66127965:T:G
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00012/12 (GnomAD)
HGVS:: NC_000009.12:g.66127966T>C, NC_000009.12:g.66127966T>G, NC_000009.11:g.43108544T>C, NC_000009.11:g.43108544T>G

Select item 148995718416.

rs1489957184 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:66129862 (GRCh38)
9:43110440 (GRCh37)
Canonical SPDI:: NC_000009.12:66129861:A:G
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00002/1 (GnomAD)
HGVS:: NC_000009.12:g.66129862A>G, NC_000009.11:g.43110440A>G

Select item 148991166717.

rs1489911667 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:66147015 (GRCh38)
9:43127593 (GRCh37)
Canonical SPDI:: NC_000009.12:66147014:A:G
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000084/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000106/3 (TOMMO)
HGVS:: NC_000009.12:g.66147015A>G, NC_000009.11:g.43127593A>G

Select item 148990795818.

rs1489907958 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 9:66123289 (GRCh38)
9:43103867 (GRCh37)
Canonical SPDI:: NC_000009.12:66123288:A:G,NC_000009.12:66123288:A:T
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00011/2 (TOMMO)
HGVS:: NC_000009.12:g.66123289A>G, NC_000009.12:g.66123289A>T, NC_000009.11:g.43103867A>G, NC_000009.11:g.43103867A>T

Select item 148983170319.

rs1489831703 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:66152707 (GRCh38)
9:43133285 (GRCh37)
Canonical SPDI:: NC_000009.12:66152706:C:T
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.00003/4 (GnomAD)
T=0.000086/7 (GnomAD_exomes)
HGVS:: NC_000009.12:g.66152707C>T, NC_000009.11:g.43133285C>T, XR_001746295.3:n.478G>A, XR_001746295.2:n.2056G>A, XR_001746295.1:n.483G>A, XR_001746296.3:n.478G>A, XR_001746296.2:n.2056G>A, XR_001746296.1:n.483G>A, NM_001012419.2:c.148G>A, XR_007061554.1:n.478G>A, XR_007061555.1:n.477G>A, XR_007061553.1:n.478G>A, XR_007061556.1:n.481G>A

Select item 148970254320.

rs1489702543 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:66129622 (GRCh38)
9:43110200 (GRCh37)
Canonical SPDI:: NC_000009.12:66129621:A:G
Gene:: ANKRD20A3P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00001/1 (GnomAD)
HGVS:: NC_000009.12:g.66129622A>G, NC_000009.11:g.43110200A>G

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