SNP Links for Gene (Select 441951) - SNP

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Items: 1 to 20 of 3989

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Select item 14915883311.

rs1491588331 [Homo sapiens]

Variant type:: INS
Alleles:: ->A [Show Flanks]
Chromosome:: 20:49284590 (GRCh38)
20:47901128 (GRCh37)
Canonical SPDI:: NC_000020.11:49284590::A
Gene:: ZFAS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.02101/10 (GnomAD)
HGVS:: NC_000020.11:g.49284590_49284591insA, NC_000020.10:g.47901127_47901128insA

Select item 14915341902.

rs1491534190 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 20:49284591 (GRCh38)
20:47901128 (GRCh37)
Canonical SPDI:: NC_000020.11:49284589:TCT:T
Gene:: ZFAS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000020.11:g.49284591_49284592del, NC_000020.10:g.47901128_47901129del

Select item 14910262493.

rs1491026249 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 20:49277015 (GRCh38)
20:47893552 (GRCh37)
Canonical SPDI:: NC_000020.11:49277013:AGA:A
Gene:: SNORD12C (Varview), ZNFX1 (Varview), ZFAS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000020.11:g.49277015_49277016del, NC_000020.10:g.47893552_47893553del

Select item 14909204194.

rs1490920419 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:49286419 (GRCh38)
20:47902956 (GRCh37)
Canonical SPDI:: NC_000020.11:49286418:G:A
Gene:: ZFAS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.49286419G>A, NC_000020.10:g.47902956G>A

Select item 14907177685.

rs1490717768 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:49280859 (GRCh38)
20:47897396 (GRCh37)
Canonical SPDI:: NC_000020.11:49280858:T:C
Gene:: ZFAS1 (Varview), SNORD12 (Varview), SNORD12B (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000020.11:g.49280859T>C, NC_000020.10:g.47897396T>C

Select item 14905592596.

rs1490559259 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:49279756 (GRCh38)
20:47896293 (GRCh37)
Canonical SPDI:: NC_000020.11:49279755:G:A
Gene:: ZNFX1 (Varview), ZFAS1 (Varview), SNORD12 (Varview), SNORD12B (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.49279756G>A, NC_000020.10:g.47896293G>A

Select item 14903855287.

rs1490385528 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTTTT>- [Show Flanks]
Chromosome:: 20:49289750 (GRCh38)
20:47906287 (GRCh37)
Canonical SPDI:: NC_000020.11:49289746:TTTCTTTT:TTT
Gene:: ZFAS1 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTT=0.000071/1 (ALFA)
-=0.000093/13 (GnomAD)
-=0.000106/2 (TOMMO)
-=0.000113/30 (TOPMED)
HGVS:: NC_000020.11:g.49289750_49289754del, NC_000020.10:g.47906287_47906291del

Select item 14900055678.

rs1490005567 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:49277708 (GRCh38)
20:47894245 (GRCh37)
Canonical SPDI:: NC_000020.11:49277707:C:T
Gene:: SNORD12C (Varview), ZNFX1 (Varview), ZFAS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000046/6 (GnomAD)
HGVS:: NC_000020.11:g.49277708C>T, NC_000020.10:g.47894245C>T

Select item 14897575339.

rs1489757533 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:49286793 (GRCh38)
20:47903330 (GRCh37)
Canonical SPDI:: NC_000020.11:49286792:A:G
Gene:: ZFAS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0./0 (GnomAD)
G=0.000023/6 (TOPMED)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000020.11:g.49286793A>G, NC_000020.10:g.47903330A>G

Select item 148951732710.

rs1489517327 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:49280558 (GRCh38)
20:47897095 (GRCh37)
Canonical SPDI:: NC_000020.11:49280557:A:G
Gene:: ZFAS1 (Varview), SNORD12 (Varview), SNORD12B (Varview)
Functional Consequence:: downstream_transcript_variant,non_coding_transcript_variant,intron_variant,upstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.49280558A>G, NC_000020.10:g.47897095A>G, NR_003604.3:n.718A>G, NR_003604.2:n.718A>G, NR_036658.2:n.718A>G, NR_036658.1:n.718A>G, NR_003605.2:n.399A>G, NR_003605.1:n.399A>G, NR_036659.2:n.276A>G, NR_036659.1:n.276A>G

Select item 148943461411.

rs1489434614 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 20:49282083 (GRCh38)
20:47898620 (GRCh37)
Canonical SPDI:: NC_000020.11:49282081:TGT:T
Gene:: ZFAS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
-=0.00003/8 (TOPMED)
-=0.000036/5 (GnomAD)
HGVS:: NC_000020.11:g.49282083_49282084del, NC_000020.10:g.47898620_47898621del

Select item 148935664312.

rs1489356643 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:49279271 (GRCh38)
20:47895808 (GRCh37)
Canonical SPDI:: NC_000020.11:49279270:C:T
Gene:: SNORD12C (Varview), ZNFX1 (Varview), ZFAS1 (Varview), SNORD12 (Varview), SNORD12B (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,upstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.49279271C>T, NC_000020.10:g.47895808C>T

Select item 148865358313.

rs1488653583 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:49287842 (GRCh38)
20:47904379 (GRCh37)
Canonical SPDI:: NC_000020.11:49287841:T:C
Gene:: ZFAS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
C=0.000035/1 (TOMMO)
C=0.000546/1 (Korea1K)
HGVS:: NC_000020.11:g.49287842T>C, NC_000020.10:g.47904379T>C

Select item 148860494514.

rs1488604945 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:49283680 (GRCh38)
20:47900217 (GRCh37)
Canonical SPDI:: NC_000020.11:49283679:C:T
Gene:: ZFAS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.49283680C>T, NC_000020.10:g.47900217C>T

Select item 148858469715.

rs1488584697 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 20:49278489 (GRCh38)
20:47895026 (GRCh37)
Canonical SPDI:: NC_000020.11:49278488:C:A
Gene:: SNORD12C (Varview), ZNFX1 (Varview), ZFAS1 (Varview), SNORD12B (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.49278489C>A, NC_000020.10:g.47895026C>A, NG_060749.1:g.198C>A, NR_003604.3:n.312C>A, NR_003604.2:n.312C>A, NR_003606.3:n.312C>A, NR_003606.2:n.312C>A, NR_036658.2:n.312C>A, NR_036658.1:n.312C>A

Select item 148855359516.

rs1488553595 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:49279745 (GRCh38)
20:47896282 (GRCh37)
Canonical SPDI:: NC_000020.11:49279744:T:C
Gene:: ZNFX1 (Varview), ZFAS1 (Varview), SNORD12 (Varview), SNORD12B (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.49279745T>C, NC_000020.10:g.47896282T>C

Select item 148751170817.

rs1487511708 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:49284415 (GRCh38)
20:47900952 (GRCh37)
Canonical SPDI:: NC_000020.11:49284414:G:A
Gene:: ZFAS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.49284415G>A, NC_000020.10:g.47900952G>A

Select item 148750260918.

rs1487502609 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 20:49284841 (GRCh38)
20:47901378 (GRCh37)
Canonical SPDI:: NC_000020.11:49284840:C:A,NC_000020.11:49284840:C:G
Gene:: ZFAS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00007/1 (ALFA)
HGVS:: NC_000020.11:g.49284841C>A, NC_000020.11:g.49284841C>G, NC_000020.10:g.47901378C>A, NC_000020.10:g.47901378C>G

Select item 148746996519.

rs1487469965 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 20:49285240 (GRCh38)
20:47901777 (GRCh37)
Canonical SPDI:: NC_000020.11:49285239:C:G
Gene:: ZFAS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.49285240C>G, NC_000020.10:g.47901777C>G

Select item 148743206520.

rs1487432065 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 20:49285738 (GRCh38)
20:47902275 (GRCh37)
Canonical SPDI:: NC_000020.11:49285737:C:A
Gene:: ZFAS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.49285738C>A, NC_000020.10:g.47902275C>A

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