SNP Links for Gene (Select 445372) - SNP

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Select item 14915750211.

rs1491575021 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 11:5623127 (GRCh38)
11:5644357 (GRCh37)
Canonical SPDI:: NC_000011.10:5623125:TAT:T
Gene:: TRIM34 (Varview), TRIM5 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.5623127_5623128del, NC_000011.9:g.5644357_5644358del

Select item 14915250502.

rs1491525050 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTT [Show Flanks]
Chromosome:: 11:5633147 (GRCh38)
11:5654378 (GRCh37)
Canonical SPDI:: NC_000011.10:5633147:TT:TTCTT
Gene:: TRIM34 (Varview), TRIM5 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TTCTT=0./0 (ALFA)
TTC=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.5633149_5633150insCTT, NC_000011.9:g.5654379_5654380insCTT

Select item 14914988393.

rs1491498839 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CACACACACACACACACACACACACACATATA,CACACACACACACACACACACACACATATA,CACACACACACACACACACACACATA,CACACACACACACACACACACATA,CACACACACACACACACACACATATA,CACACACACACACACACACATA,CACACACACACACACACACATATA,CACACACACACACACACATA,CACACACACACACACACATATA,CACACACACACACACACATATATA,CACACACACACACACACATATATATA,CACACACACACACACATA,CACACACACACACACATATA,CACACACACACACACATATATA,CACACACACACACACATATATATA,CACACACACACACATA,CACACACACACACATACACACACATATATATA,CACACACACACACATATA,CACACACACACACATATATA,CACACACACACACATATATATA,CACACACACACAGATATA,CACACACACACATA,CACACACACACATATA,CACACACACACATATATA,CACACACACACATATATATA,CACACACACACATATATATATA,CACACACACATA,CACACACACATATA,CACACACACATATATA,CACACACACATATATATA,CACACACACATATATATATA,CACACACACATATATATATATA,CACACACATA,CACACACATATA,CACACACATATATA,CACACACATATATATA,CACACACATATATATATA,CACACACATATATATATATATATATA,CACACATA,CACACATATA,CACACATATATA,CACACATATATATA,CACACATATATATATA,CACACATATATATATATATA,CACACATATATATATATATATA,CACACATATATATATATATATATA,CACACATATATATATATATATATATA,CACACATATATATATATATATATATATA,CACACATATATATATATATATATATATATA,CACATA,CACATATA,CACATATATA,CACATATATATA,CACATATATATATA,CACATATATATATATATA,CACATATATATATATATATA,CACATATATATATATATATATA,CACATATATATATATATATATATA,CACATATATATATATATATATATATA,CACATATATATATATATATATATATATA,CACATATATATATATATATATATATATATA,CACATATATATATATATATATATATATATATA,CACATATATATATATATATATATATATATATATA,CATA,CATATA,CATATATA,CATATATATA,CATATATATATATA,CATATATATATATATATA,CATATATATATATATATATA,CATATATATATATATATATATA,CATATATATATATATATATATATA,CATATATATATATATATATATATATA,CATATATATATATATATATATATATATA,CATATATATATATATATATATATATATATA,CATATATATATATATATATATATATATATATA,CATATATATATATATATATATATATATATATATA [Show Flanks]
Chromosome:: 11:5634530 (GRCh38)
11:5655761 (GRCh37)
Canonical SPDI:: NC_000011.10:5634530:A:ACACACACACACACACACACACACACACATATA,NC_000011.10:5634530:A:ACACACACACACACACACACACACACATATA,NC_000011.10:5634530:A:ACACACACACACACACACACACACATA,NC_000011.10:5634530:A:ACACACACACACACACACACACATA,NC_000011.10:5634530:A:ACACACACACACACACACACACATATA,NC_000011.10:5634530:A:ACACACACACACACACACACATA,NC_000011.10:5634530:A:ACACACACACACACACACACATATA,NC_000011.10:5634530:A:ACACACACACACACACACATA,NC_000011.10:5634530:A:ACACACACACACACACACATATA,NC_000011.10:5634530:A:ACACACACACACACACACATATATA,NC_000011.10:5634530:A:ACACACACACACACACACATATATATA,NC_000011.10:5634530:A:ACACACACACACACACATA,NC_000011.10:5634530:A:ACACACACACACACACATATA,NC_000011.10:5634530:A:ACACACACACACACACATATATA,NC_000011.10:5634530:A:ACACACACACACACACATATATATA,NC_000011.10:5634530:A:ACACACACACACACATA,NC_000011.10:5634530:A:ACACACACACACACATACACACACATATATATA,NC_000011.10:5634530:A:ACACACACACACACATATA,NC_000011.10:5634530:A:ACACACACACACACATATATA,NC_000011.10:5634530:A:ACACACACACACACATATATATA,NC_000011.10:5634530:A:ACACACACACACAGATATA,NC_000011.10:5634530:A:ACACACACACACATA,NC_000011.10:5634530:A:ACACACACACACATATA,NC_000011.10:5634530:A:ACACACACACACATATATA,NC_000011.10:5634530:A:ACACACACACACATATATATA,NC_000011.10:5634530:A:ACACACACACACATATATATATA,NC_000011.10:5634530:A:ACACACACACATA,NC_000011.10:5634530:A:ACACACACACATATA,NC_000011.10:5634530:A:ACACACACACATATATA,NC_000011.10:5634530:A:ACACACACACATATATATA,NC_000011.10:5634530:A:ACACACACACATATATATATA,NC_000011.10:5634530:A:ACACACACACATATATATATATA,NC_000011.10:5634530:A:ACACACACATA,NC_000011.10:5634530:A:ACACACACATATA,NC_000011.10:5634530:A:ACACACACATATATA,NC_000011.10:5634530:A:ACACACACATATATATA,NC_000011.10:5634530:A:ACACACACATATATATATA,NC_000011.10:5634530:A:ACACACACATATATATATATATATATA,NC_000011.10:5634530:A:ACACACATA,NC_000011.10:5634530:A:ACACACATATA,NC_000011.10:5634530:A:ACACACATATATA,NC_000011.10:5634530:A:ACACACATATATATA,NC_000011.10:5634530:A:ACACACATATATATATA,NC_000011.10:5634530:A:ACACACATATATATATATATA,NC_000011.10:5634530:A:ACACACATATATATATATATATA,NC_000011.10:5634530:A:ACACACATATATATATATATATATA,NC_000011.10:5634530:A:ACACACATATATATATATATATATATA,NC_000011.10:5634530:A:ACACACATATATATATATATATATATATA,NC_000011.10:5634530:A:ACACACATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACACATA,NC_000011.10:5634530:A:ACACATATA,NC_000011.10:5634530:A:ACACATATATA,NC_000011.10:5634530:A:ACACATATATATA,NC_000011.10:5634530:A:ACACATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACATA,NC_000011.10:5634530:A:ACATATA,NC_000011.10:5634530:A:ACATATATA,NC_000011.10:5634530:A:ACATATATATA,NC_000011.10:5634530:A:ACATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATATATATATATATATATA
Gene:: TRIM34 (Varview), TRIM5 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACACACACACATATA=0./0 (ALFA)
ACACATATATATAT=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.5634531AC[14]AT[2]A[1], NC_000011.10:g.5634531AC[13]AT[2]A[1], NC_000011.10:g.5634531AC[12]ATA[1], NC_000011.10:g.5634531AC[11]ATA[1], NC_000011.10:g.5634531AC[11]AT[2]A[1], NC_000011.10:g.5634531AC[10]ATA[1], NC_000011.10:g.5634531AC[10]AT[2]A[1], NC_000011.10:g.5634531AC[9]ATA[1], NC_000011.10:g.5634531AC[9]AT[2]A[1], NC_000011.10:g.5634531AC[9]AT[3]A[1], NC_000011.10:g.5634531AC[9]AT[4]A[1], NC_000011.10:g.5634531AC[8]ATA[1], NC_000011.10:g.5634531AC[8]AT[2]A[1], NC_000011.10:g.5634531AC[8]AT[3]A[1], NC_000011.10:g.5634531AC[8]AT[4]A[1], NC_000011.10:g.5634531AC[7]ATA[1], NC_000011.10:g.5634531AC[7]ATACACACACATATATATA[1], NC_000011.10:g.5634531AC[7]AT[2]A[1], NC_000011.10:g.5634531AC[7]AT[3]A[1], NC_000011.10:g.5634531AC[7]AT[4]A[1], NC_000011.10:g.5634531AC[6]AGATATA[1], NC_000011.10:g.5634531AC[6]ATA[1], NC_000011.10:g.5634531AC[6]AT[2]A[1], NC_000011.10:g.5634531AC[6]AT[3]A[1], NC_000011.10:g.5634531AC[6]AT[4]A[1], NC_000011.10:g.5634531AC[6]AT[5]A[1], NC_000011.10:g.5634531AC[5]ATA[1], NC_000011.10:g.5634531AC[5]AT[2]A[1], NC_000011.10:g.5634531AC[5]AT[3]A[1], NC_000011.10:g.5634531AC[5]AT[4]A[1], NC_000011.10:g.5634531AC[5]AT[5]A[1], NC_000011.10:g.5634531AC[5]AT[6]A[1], NC_000011.10:g.5634531AC[4]ATA[1], NC_000011.10:g.5634531AC[4]AT[2]A[1], NC_000011.10:g.5634531AC[4]AT[3]A[1], NC_000011.10:g.5634531AC[4]AT[4]A[1], NC_000011.10:g.5634531AC[4]AT[5]A[1], NC_000011.10:g.5634531AC[4]AT[9]A[1], NC_000011.10:g.5634531AC[3]ATA[1], NC_000011.10:g.5634531AC[3]AT[2]A[1], NC_000011.10:g.5634531AC[3]AT[3]A[1], NC_000011.10:g.5634531AC[3]AT[4]A[1], NC_000011.10:g.5634531AC[3]AT[5]A[1], NC_000011.10:g.5634531AC[3]AT[7]A[1], NC_000011.10:g.5634531AC[3]AT[8]A[1], NC_000011.10:g.5634531AC[3]AT[9]A[1], NC_000011.10:g.5634531AC[3]AT[10]A[1], NC_000011.10:g.5634531AC[3]AT[11]A[1], NC_000011.10:g.5634531AC[3]AT[12]A[1], NC_000011.10:g.5634531AC[2]ATA[1], NC_000011.10:g.5634531AC[2]AT[2]A[1], NC_000011.10:g.5634531AC[2]AT[3]A[1], NC_000011.10:g.5634531AC[2]AT[4]A[1], NC_000011.10:g.5634531AC[2]AT[5]A[1], NC_000011.10:g.5634531AC[2]AT[7]A[1], NC_000011.10:g.5634531AC[2]AT[8]A[1], NC_000011.10:g.5634531AC[2]AT[9]A[1], NC_000011.10:g.5634531AC[2]AT[10]A[1], NC_000011.10:g.5634531AC[2]AT[11]A[1], NC_000011.10:g.5634531AC[2]AT[12]A[1], NC_000011.10:g.5634531AC[2]AT[13]A[1], NC_000011.10:g.5634531AC[2]AT[14]A[1], NC_000011.10:g.5634531AC[2]AT[15]A[1], NC_000011.10:g.5634531_5634532insCATA, NC_000011.10:g.5634531_5634532insCATATA, NC_000011.10:g.5634531_5634532insCATATATA, NC_000011.10:g.5634531_5634532insCATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATATATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATATATATATATATATATA, NC_000011.9:g.5655761AC[14]AT[2]A[1], NC_000011.9:g.5655761AC[13]AT[2]A[1], NC_000011.9:g.5655761AC[12]ATA[1], NC_000011.9:g.5655761AC[11]ATA[1], NC_000011.9:g.5655761AC[11]AT[2]A[1], NC_000011.9:g.5655761AC[10]ATA[1], NC_000011.9:g.5655761AC[10]AT[2]A[1], NC_000011.9:g.5655761AC[9]ATA[1], NC_000011.9:g.5655761AC[9]AT[2]A[1], NC_000011.9:g.5655761AC[9]AT[3]A[1], NC_000011.9:g.5655761AC[9]AT[4]A[1], NC_000011.9:g.5655761AC[8]ATA[1], NC_000011.9:g.5655761AC[8]AT[2]A[1], NC_000011.9:g.5655761AC[8]AT[3]A[1], NC_000011.9:g.5655761AC[8]AT[4]A[1], NC_000011.9:g.5655761AC[7]ATA[1], NC_000011.9:g.5655761AC[7]ATACACACACATATATATA[1], NC_000011.9:g.5655761AC[7]AT[2]A[1], NC_000011.9:g.5655761AC[7]AT[3]A[1], NC_000011.9:g.5655761AC[7]AT[4]A[1], NC_000011.9:g.5655761AC[6]AGATATA[1], NC_000011.9:g.5655761AC[6]ATA[1], NC_000011.9:g.5655761AC[6]AT[2]A[1], NC_000011.9:g.5655761AC[6]AT[3]A[1], NC_000011.9:g.5655761AC[6]AT[4]A[1], NC_000011.9:g.5655761AC[6]AT[5]A[1], NC_000011.9:g.5655761AC[5]ATA[1], NC_000011.9:g.5655761AC[5]AT[2]A[1], NC_000011.9:g.5655761AC[5]AT[3]A[1], NC_000011.9:g.5655761AC[5]AT[4]A[1], NC_000011.9:g.5655761AC[5]AT[5]A[1], NC_000011.9:g.5655761AC[5]AT[6]A[1], NC_000011.9:g.5655761AC[4]ATA[1], NC_000011.9:g.5655761AC[4]AT[2]A[1], NC_000011.9:g.5655761AC[4]AT[3]A[1], NC_000011.9:g.5655761AC[4]AT[4]A[1], NC_000011.9:g.5655761AC[4]AT[5]A[1], NC_000011.9:g.5655761AC[4]AT[9]A[1], NC_000011.9:g.5655761AC[3]ATA[1], NC_000011.9:g.5655761AC[3]AT[2]A[1], NC_000011.9:g.5655761AC[3]AT[3]A[1], NC_000011.9:g.5655761AC[3]AT[4]A[1], NC_000011.9:g.5655761AC[3]AT[5]A[1], NC_000011.9:g.5655761AC[3]AT[7]A[1], NC_000011.9:g.5655761AC[3]AT[8]A[1], NC_000011.9:g.5655761AC[3]AT[9]A[1], NC_000011.9:g.5655761AC[3]AT[10]A[1], NC_000011.9:g.5655761AC[3]AT[11]A[1], NC_000011.9:g.5655761AC[3]AT[12]A[1], NC_000011.9:g.5655761AC[2]ATA[1], NC_000011.9:g.5655761AC[2]AT[2]A[1], NC_000011.9:g.5655761AC[2]AT[3]A[1], NC_000011.9:g.5655761AC[2]AT[4]A[1], NC_000011.9:g.5655761AC[2]AT[5]A[1], NC_000011.9:g.5655761AC[2]AT[7]A[1], NC_000011.9:g.5655761AC[2]AT[8]A[1], NC_000011.9:g.5655761AC[2]AT[9]A[1], NC_000011.9:g.5655761AC[2]AT[10]A[1], NC_000011.9:g.5655761AC[2]AT[11]A[1], NC_000011.9:g.5655761AC[2]AT[12]A[1], NC_000011.9:g.5655761AC[2]AT[13]A[1], NC_000011.9:g.5655761AC[2]AT[14]A[1], NC_000011.9:g.5655761AC[2]AT[15]A[1], NC_000011.9:g.5655761_5655762insCATA, NC_000011.9:g.5655761_5655762insCATATA, NC_000011.9:g.5655761_5655762insCATATATA, NC_000011.9:g.5655761_5655762insCATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATATATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATATATATATATATATATA

Select item 14914318714.

rs1491431871 has merged into rs869222613 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>-,CTCT [Show Flanks]
Chromosome:: 11:5613909 (GRCh38)
11:5635139 (GRCh37)
Canonical SPDI:: NC_000011.10:5613907:TCT:T,NC_000011.10:5613907:TCT:TCTCT
Gene:: TRIM5 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: -=0.0002/1 (GnomAD)
HGVS:: NC_000011.10:g.5613909_5613910del, NC_000011.10:g.5613909_5613910dup, NC_000011.9:g.5635139_5635140del, NC_000011.9:g.5635139_5635140dup

Select item 14913966055.

rs1491396605 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 11:5604782 (GRCh38)
11:5626013 (GRCh37)
Canonical SPDI:: NC_000011.10:5604782:GGGGG:GGGGGG
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GGGGGG=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.5604787dup, NC_000011.9:g.5626017dup

Select item 14913774026.

rs1491377402 has merged into rs35793386 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,T,TT,TTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 11:5595732 (GRCh38)
11:5616962 (GRCh37)
Canonical SPDI:: NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,genic_downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
TT=0.197324/118 (NorthernSweden)
HGVS:: NC_000011.10:g.5595732_5595735del, NC_000011.10:g.5595733_5595735del, NC_000011.10:g.5595734_5595735del, NC_000011.10:g.5595735del, NC_000011.10:g.5595735dup, NC_000011.10:g.5595734_5595735dup, NC_000011.10:g.5595733_5595735dup, NC_000011.10:g.5595732_5595735dup, NC_000011.10:g.5595725_5595735dup, NC_000011.9:g.5616962_5616965del, NC_000011.9:g.5616963_5616965del, NC_000011.9:g.5616964_5616965del, NC_000011.9:g.5616965del, NC_000011.9:g.5616965dup, NC_000011.9:g.5616964_5616965dup, NC_000011.9:g.5616963_5616965dup, NC_000011.9:g.5616962_5616965dup, NC_000011.9:g.5616955_5616965dup

Select item 14912923787.

rs1491292378 has merged into rs745849246 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTT>-,T,TT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT [Show Flanks]
Chromosome:: 11:5643134 (GRCh38)
11:5664364 (GRCh37)
Canonical SPDI:: NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTT,NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTTT,NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTTTT,NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTTTTTT,NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTTTTTTT,NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTTTTTTTTTTT
Gene:: TRIM34 (Varview), TRIM5 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
TTTTTT=0.000004/1 (TOPMED)
-=0.159056/613 (ALSPAC)
-=0.169364/628 (TWINSUK)
HGVS:: NC_000011.10:g.5643134_5643136del, NC_000011.10:g.5643135_5643136del, NC_000011.10:g.5643136del, NC_000011.10:g.5643136dup, NC_000011.10:g.5643135_5643136dup, NC_000011.10:g.5643134_5643136dup, NC_000011.10:g.5643133_5643136dup, NC_000011.10:g.5643132_5643136dup, NC_000011.10:g.5643131_5643136dup, NC_000011.9:g.5664364_5664366del, NC_000011.9:g.5664365_5664366del, NC_000011.9:g.5664366del, NC_000011.9:g.5664366dup, NC_000011.9:g.5664365_5664366dup, NC_000011.9:g.5664364_5664366dup, NC_000011.9:g.5664363_5664366dup, NC_000011.9:g.5664362_5664366dup, NC_000011.9:g.5664361_5664366dup

Select item 14912357098.

rs1491235709 [Homo sapiens]

Variant type:: INS
Alleles:: ->A [Show Flanks]
Chromosome:: 11:5617664 (GRCh38)
11:5638895 (GRCh37)
Canonical SPDI:: NC_000011.10:5617664::A
Gene:: TRIM5 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00079/11 (TOMMO)
HGVS:: NC_000011.10:g.5617664_5617665insA, NC_000011.9:g.5638894_5638895insA

Select item 14911902939.

rs1491190293 has merged into rs571111369 [Homo sapiens]

Variant type:: DELINS
Alleles:: CGTGTGTGTGTG>-,CGTGTGTGTGTGCGTGTGTGTGTG [Show Flanks]
Chromosome:: 11:5604177 (GRCh38)
11:5625407 (GRCh37)
Canonical SPDI:: NC_000011.10:5604165:GTGTGTGTGTGCGTGTGTGTGTG:GTGTGTGTGTG,NC_000011.10:5604165:GTGTGTGTGTGCGTGTGTGTGTG:GTGTGTGTGTGCGTGTGTGTGTGCGTGTGTGTGTG
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GTGTGTGTGTGCGTGTGTGTGTGCGTGTGTGTGTG=0./0 (ALFA)
-=0.09719/97 (GoNL)
HGVS:: NC_000011.10:g.5604177_5604188del, NC_000011.10:g.5604177_5604188dup, NC_000011.9:g.5625407_5625418del, NC_000011.9:g.5625407_5625418dup

Select item 149118762310.

rs1491187623 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 11:5635254 (GRCh38)
11:5656484 (GRCh37)
Canonical SPDI:: NC_000011.10:5635253:AT:
Gene:: TRIM34 (Varview), TRIM5 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.5635254_5635255del, NC_000011.9:g.5656484_5656485del

Select item 149114794911.

rs1491147949 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 11:5632823 (GRCh38)
11:5654054 (GRCh37)
Canonical SPDI:: NC_000011.10:5632823::G
Gene:: TRIM34 (Varview), TRIM5 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00002/2 (GnomAD)
HGVS:: NC_000011.10:g.5632823_5632824insG, NC_000011.9:g.5654053_5654054insG

Select item 149113219912.

rs1491132199 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 11:5617668 (GRCh38)
11:5638898 (GRCh37)
Canonical SPDI:: NC_000011.10:5617663:TTTTTT:TTTT
Gene:: TRIM5 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TTTT=0./0 (ALFA)
-=0.000008/1 (GnomAD)
HGVS:: NC_000011.10:g.5617668_5617669del, NC_000011.9:g.5638898_5638899del

Select item 149110721513.

rs1491107215 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 11:5623126 (GRCh38)
11:5644357 (GRCh37)
Canonical SPDI:: NC_000011.10:5623126:A:AA
Gene:: TRIM34 (Varview), TRIM5 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
A=0.000091/10 (GnomAD)
HGVS:: NC_000011.10:g.5623127dup, NC_000011.9:g.5644357dup

Select item 149107702614.

rs1491077026 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 11:5596541 (GRCh38)
11:5617771 (GRCh37)
Canonical SPDI:: NC_000011.10:5596540:CT:
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00075/10 (TOMMO)
HGVS:: NC_000011.10:g.5596541_5596542del, NC_000011.9:g.5617771_5617772del

Select item 149102159815.

rs1491021598 has merged into rs144476066 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTT>-,T,TT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 11:5615585 (GRCh38)
11:5636815 (GRCh37)
Canonical SPDI:: NC_000011.10:5615577:TTTTTTTTTT:TTTTTTT,NC_000011.10:5615577:TTTTTTTTTT:TTTTTTTT,NC_000011.10:5615577:TTTTTTTTTT:TTTTTTTTT,NC_000011.10:5615577:TTTTTTTTTT:TTTTTTTTTTT,NC_000011.10:5615577:TTTTTTTTTT:TTTTTTTTTTTT,NC_000011.10:5615577:TTTTTTTTTT:TTTTTTTTTTTTT,NC_000011.10:5615577:TTTTTTTTTT:TTTTTTTTTTTTTT,NC_000011.10:5615577:TTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000011.10:5615577:TTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000011.10:5615577:TTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT
Gene:: TRIM5 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTT=0./0 (ALFA)
-=0.000159/42 (TOPMED)
T=0.125/5 (GENOME_DK)
HGVS:: NC_000011.10:g.5615585_5615587del, NC_000011.10:g.5615586_5615587del, NC_000011.10:g.5615587del, NC_000011.10:g.5615587dup, NC_000011.10:g.5615586_5615587dup, NC_000011.10:g.5615585_5615587dup, NC_000011.10:g.5615584_5615587dup, NC_000011.10:g.5615580_5615587dup, NC_000011.10:g.5615578_5615587dup, NC_000011.10:g.5615587_5615588insTTTTTTTTTTTTTT, NC_000011.9:g.5636815_5636817del, NC_000011.9:g.5636816_5636817del, NC_000011.9:g.5636817del, NC_000011.9:g.5636817dup, NC_000011.9:g.5636816_5636817dup, NC_000011.9:g.5636815_5636817dup, NC_000011.9:g.5636814_5636817dup, NC_000011.9:g.5636810_5636817dup, NC_000011.9:g.5636808_5636817dup, NC_000011.9:g.5636817_5636818insTTTTTTTTTTTTTT

Select item 149101920816.

rs1491019208 [Homo sapiens]

Variant type:: INS
Alleles:: ->CT,G,GTTCTCCCCT [Show Flanks]
Chromosome:: 11:5596541 (GRCh38)
11:5617772 (GRCh37)
Canonical SPDI:: NC_000011.10:5596541::CT,NC_000011.10:5596541::G,NC_000011.10:5596541::GTTCTCCCCT
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GTTCTCCCCT=0./0 (ALFA)
HGVS:: NC_000011.10:g.5596541_5596542insCT, NC_000011.10:g.5596541_5596542insG, NC_000011.10:g.5596541_5596542insGTTCTCCCCT, NC_000011.9:g.5617771_5617772insCT, NC_000011.9:g.5617771_5617772insG, NC_000011.9:g.5617771_5617772insGTTCTCCCCT

Select item 149101757917.

rs1491017579 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 11:5623553 (GRCh38)
11:5644783 (GRCh37)
Canonical SPDI:: NC_000011.10:5623551:TGT:T
Gene:: TRIM34 (Varview), TRIM5 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.5623553_5623554del, NC_000011.9:g.5644783_5644784del

Select item 149092931918.

rs1490929319 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:5634665 (GRCh38)
11:5655895 (GRCh37)
Canonical SPDI:: NC_000011.10:5634664:C:G,NC_000011.10:5634664:C:T
Gene:: TRIM34 (Varview), TRIM5 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: intron_variant,missense_variant,coding_sequence_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.5634665C>G, NC_000011.10:g.5634665C>T, NC_000011.9:g.5655895C>G, NC_000011.9:g.5655895C>T, NM_021616.6:c.554C>G, NM_021616.6:c.554C>T, NM_021616.5:c.554C>G, NM_021616.5:c.554C>T, NM_001003819.4:c.1616C>G, NM_001003819.4:c.1616C>T, NM_001003819.3:c.1616C>G, NM_001003819.3:c.1616C>T, NM_130389.3:c.-182C>G, NM_130389.3:c.-182C>T, NM_130389.2:c.-182C>G, NM_130389.2:c.-182C>T, NM_130390.2:c.554C>G, NM_130390.2:c.554C>T, NM_001003827.1:c.554C>G, NM_001003827.1:c.554C>T, NM_130389.1:c.-182C>G, NM_130389.1:c.-182C>T, NP_067629.2:p.Thr185Arg, NP_067629.2:p.Thr185Ile, NP_001003819.1:p.Thr539Arg, NP_001003819.1:p.Thr539Ile, NP_569074.2:p.Thr185Arg, NP_569074.2:p.Thr185Ile, NP_001003827.1:p.Thr185Arg, NP_001003827.1:p.Thr185Ile

Select item 149089479819.

rs1490894798 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:5605505 (GRCh38)
11:5626735 (GRCh37)
Canonical SPDI:: NC_000011.10:5605504:C:A
Gene:: TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.5605505C>A, NC_000011.9:g.5626735C>A, NM_058166.5:c.688C>A, NM_058166.4:c.688C>A, NM_001003819.4:c.772C>A, NM_001003819.3:c.772C>A, NM_001003818.3:c.772C>A, NM_001003818.2:c.772C>A, NM_001198644.2:c.163C>A, NM_001198644.1:c.163C>A, NM_001198645.2:c.163C>A, NM_001198645.1:c.163C>A, NP_477514.1:p.Leu230Met, NP_001003819.1:p.Leu258Met, NP_001003818.1:p.Leu258Met, NP_001185573.1:p.Leu55Met, NP_001185574.1:p.Leu55Met

Select item 149080179420.

rs1490801794 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 11:5641927 (GRCh38)
11:5663157 (GRCh37)
Canonical SPDI:: NC_000011.10:5641926:G:A,NC_000011.10:5641926:G:T
Gene:: TRIM34 (Varview), TRIM5 (Varview), TRIM6-TRIM34 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.5641927G>A, NC_000011.10:g.5641927G>T, NC_000011.9:g.5663157G>A, NC_000011.9:g.5663157G>T

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