Links from Gene
Items: 1 to 20 of 11680
1.
rs1491537787 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->ACACACACACGCGC,ACACACACGCGC,ACACACACGCGCGC,ACACACGCGC,ACACACGCGCGC,ACACGCGCGC,ACGCGCGC
[Show Flanks]
- Chromosome:
- 17:3936754
(GRCh38)
17:3840049
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3936754:C:CACACACACACGCGC,NC_000017.11:3936754:C:CACACACACGCGC,NC_000017.11:3936754:C:CACACACACGCGCGC,NC_000017.11:3936754:C:CACACACGCGC,NC_000017.11:3936754:C:CACACACGCGCGC,NC_000017.11:3936754:C:CACACGCGCGC,NC_000017.11:3936754:C:CACGCGCGC
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
CACACACACGCGC=0./0
(
ALFA)
- HGVS:
NC_000017.11:g.3936755CA[5]CG[2]C[1], NC_000017.11:g.3936755CA[4]CG[2]C[1], NC_000017.11:g.3936755CA[4]CG[3]C[1], NC_000017.11:g.3936755CA[3]CG[2]C[1], NC_000017.11:g.3936755CA[3]CG[3]C[1], NC_000017.11:g.3936755CA[2]CG[3]C[1], NC_000017.11:g.3936755_3936756insACGCGCGC, NC_000017.10:g.3840049CA[5]CG[2]C[1], NC_000017.10:g.3840049CA[4]CG[2]C[1], NC_000017.10:g.3840049CA[4]CG[3]C[1], NC_000017.10:g.3840049CA[3]CG[2]C[1], NC_000017.10:g.3840049CA[3]CG[3]C[1], NC_000017.10:g.3840049CA[2]CG[3]C[1], NC_000017.10:g.3840049_3840050insACGCGCGC, NG_029041.1:g.32688GC[2]GT[5]G[1], NG_029041.1:g.32688GC[2]GT[4]G[1], NG_029041.1:g.32688GC[3]GT[4]G[1], NG_029041.1:g.32688GC[2]GT[3]G[1], NG_029041.1:g.32688GC[3]GT[3]G[1], NG_029041.1:g.32688GC[3]GT[2]G[1], NG_029041.1:g.32688GC[3]GTG[1]
3.
rs1491477712 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- TA>-
[Show Flanks]
- Chromosome:
- 17:3936721
(GRCh38)
17:3840015
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3936720:TA:
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
-=0./0
(
ALFA)
-=0.000105/11
(GnomAD)
- HGVS:
4.
rs1491308843 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- GC>-,GCGC
[Show Flanks]
- Chromosome:
- 17:3936756
(GRCh38)
17:3840050
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3936754:CGC:C,NC_000017.11:3936754:CGC:CGCGC
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
CGCGC=0./0
(
ALFA)
-=0.000031/4
(GnomAD)
- HGVS:
5.
rs1491306209 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- GC>-
[Show Flanks]
- Chromosome:
- 17:3951553
(GRCh38)
17:3854847
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3951551:CGC:C
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency
- MAF:
-=0.000007/1
(GnomAD_exomes)
-=0.000138/2
(ExAC)
- HGVS:
6.
rs1491254722 [Homo sapiens]- Variant type:
- INS
- Alleles:
- ->T
[Show Flanks]
- Chromosome:
- 17:3958848
(GRCh38)
17:3862143
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3958848::T
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by cluster
- MAF:
T=0.00135/22
(TOMMO)
T=0.00167/3
(Korea1K)
T=0.00586/576
(GnomAD)
- HGVS:
7.
rs1491177459 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AA>-,AAAA
[Show Flanks]
- Chromosome:
- 17:3958849
(GRCh38)
17:3862143
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3958847:AAA:A,NC_000017.11:3958847:AAA:AAAAA
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAAA=0./0
(
ALFA)
-=0.0006/10
(TOMMO)
-=0.00111/2
(Korea1K)
-=0.00111/96
(GnomAD)
- HGVS:
8.
rs1491090700 has merged into rs111586874 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTTTTT>-,TTTT,TTTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 17:3934532
(GRCh38)
17:3837826
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3934522:TTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000017.11:3934522:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000017.11:3934522:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000017.11:3934522:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000017.11:3934522:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000017.11:3934522:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000017.11:3934522:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000017.11:3934522:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000017.11:3934522:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000017.11:3934522:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:3934522:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:3934522:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:3934522:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:3934522:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:3934522:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTTTTT=0./0
(
ALFA)
T=0.175/7
(GENOME_DK)
T=0.3534/1770
(1000Genomes)
- HGVS:
NC_000017.11:g.3934532_3934538del, NC_000017.11:g.3934536_3934538del, NC_000017.11:g.3934537_3934538del, NC_000017.11:g.3934538del, NC_000017.11:g.3934538dup, NC_000017.11:g.3934537_3934538dup, NC_000017.11:g.3934536_3934538dup, NC_000017.11:g.3934535_3934538dup, NC_000017.11:g.3934534_3934538dup, NC_000017.11:g.3934533_3934538dup, NC_000017.11:g.3934532_3934538dup, NC_000017.11:g.3934531_3934538dup, NC_000017.11:g.3934530_3934538dup, NC_000017.11:g.3934525_3934538dup, NC_000017.11:g.3934538_3934539insTTTTTTTTTTTTTTTTTTT, NC_000017.10:g.3837826_3837832del, NC_000017.10:g.3837830_3837832del, NC_000017.10:g.3837831_3837832del, NC_000017.10:g.3837832del, NC_000017.10:g.3837832dup, NC_000017.10:g.3837831_3837832dup, NC_000017.10:g.3837830_3837832dup, NC_000017.10:g.3837829_3837832dup, NC_000017.10:g.3837828_3837832dup, NC_000017.10:g.3837827_3837832dup, NC_000017.10:g.3837826_3837832dup, NC_000017.10:g.3837825_3837832dup, NC_000017.10:g.3837824_3837832dup, NC_000017.10:g.3837819_3837832dup, NC_000017.10:g.3837832_3837833insTTTTTTTTTTTTTTTTTTT, NG_029041.1:g.34914_34920del, NG_029041.1:g.34918_34920del, NG_029041.1:g.34919_34920del, NG_029041.1:g.34920del, NG_029041.1:g.34920dup, NG_029041.1:g.34919_34920dup, NG_029041.1:g.34918_34920dup, NG_029041.1:g.34917_34920dup, NG_029041.1:g.34916_34920dup, NG_029041.1:g.34915_34920dup, NG_029041.1:g.34914_34920dup, NG_029041.1:g.34913_34920dup, NG_029041.1:g.34912_34920dup, NG_029041.1:g.34907_34920dup, NG_029041.1:g.34920_34921insAAAAAAAAAAAAAAAAAAA
9.
rs1491073308 has merged into rs10668980 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTTTTT>-,TT,TTTT,TTTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 17:3935549
(GRCh38)
17:3838843
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3935535:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000017.11:3935535:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000017.11:3935535:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000017.11:3935535:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000017.11:3935535:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000017.11:3935535:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000017.11:3935535:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:3935535:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:3935535:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:3935535:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:3935535:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:3935535:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:3935535:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:3935535:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTTTTTT=0./0
(
ALFA)
-=0.0769/385
(1000Genomes)
- HGVS:
NC_000017.11:g.3935549_3935555del, NC_000017.11:g.3935551_3935555del, NC_000017.11:g.3935553_3935555del, NC_000017.11:g.3935554_3935555del, NC_000017.11:g.3935555del, NC_000017.11:g.3935555dup, NC_000017.11:g.3935554_3935555dup, NC_000017.11:g.3935553_3935555dup, NC_000017.11:g.3935552_3935555dup, NC_000017.11:g.3935551_3935555dup, NC_000017.11:g.3935550_3935555dup, NC_000017.11:g.3935549_3935555dup, NC_000017.11:g.3935547_3935555dup, NC_000017.11:g.3935546_3935555dup, NC_000017.10:g.3838843_3838849del, NC_000017.10:g.3838845_3838849del, NC_000017.10:g.3838847_3838849del, NC_000017.10:g.3838848_3838849del, NC_000017.10:g.3838849del, NC_000017.10:g.3838849dup, NC_000017.10:g.3838848_3838849dup, NC_000017.10:g.3838847_3838849dup, NC_000017.10:g.3838846_3838849dup, NC_000017.10:g.3838845_3838849dup, NC_000017.10:g.3838844_3838849dup, NC_000017.10:g.3838843_3838849dup, NC_000017.10:g.3838841_3838849dup, NC_000017.10:g.3838840_3838849dup, NG_029041.1:g.33901_33907del, NG_029041.1:g.33903_33907del, NG_029041.1:g.33905_33907del, NG_029041.1:g.33906_33907del, NG_029041.1:g.33907del, NG_029041.1:g.33907dup, NG_029041.1:g.33906_33907dup, NG_029041.1:g.33905_33907dup, NG_029041.1:g.33904_33907dup, NG_029041.1:g.33903_33907dup, NG_029041.1:g.33902_33907dup, NG_029041.1:g.33901_33907dup, NG_029041.1:g.33899_33907dup, NG_029041.1:g.33898_33907dup
10.
rs1491058798 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TA>-
[Show Flanks]
- Chromosome:
- 17:3958741
(GRCh38)
17:3862035
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3958733:ATATATATA:ATATATA
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
ATATATA=0./0
(
ALFA)
-=0.0001/7
(GnomAD)
-=0.00022/3
(TOMMO)
- HGVS:
11.
rs1491058373 has merged into rs561383105 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAA>-,A,AA,AAAA,AAAAA
[Show Flanks]
- Chromosome:
- 17:3931152
(GRCh38)
17:3834446
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3931139:AAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000017.11:3931139:AAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000017.11:3931139:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000017.11:3931139:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000017.11:3931139:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAAAAAAAAAAAAAAA=0./0
(
ALFA)
-=0.000015/4
(TOPMED)
A=0.075/3
(GENOME_DK)
- HGVS:
NC_000017.11:g.3931152_3931154del, NC_000017.11:g.3931153_3931154del, NC_000017.11:g.3931154del, NC_000017.11:g.3931154dup, NC_000017.11:g.3931153_3931154dup, NC_000017.10:g.3834446_3834448del, NC_000017.10:g.3834447_3834448del, NC_000017.10:g.3834448del, NC_000017.10:g.3834448dup, NC_000017.10:g.3834447_3834448dup, NG_029041.1:g.38301_38303del, NG_029041.1:g.38302_38303del, NG_029041.1:g.38303del, NG_029041.1:g.38303dup, NG_029041.1:g.38302_38303dup
12.
rs1491002627 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 17:3936770
(GRCh38)
17:3840064
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3936769:C:T
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000007/1
(GnomAD)
T=0.000008/2
(TOPMED)
- HGVS:
13.
rs1490976961 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 17:3937803
(GRCh38)
17:3841097
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3937802:G:A
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
- HGVS:
14.
rs1490933392 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 17:3924694
(GRCh38)
17:3827988
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3924693:G:A
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,3_prime_UTR_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000011/3
(TOPMED)
A=0.000014/2
(GnomAD)
- HGVS:
NC_000017.11:g.3924694G>A, NC_000017.10:g.3827988G>A, NG_029041.1:g.44749C>T, NM_005173.4:c.*728C>T, NM_005173.3:c.*728C>T, NM_174953.3:c.*728C>T, NM_174953.2:c.*728C>T, NM_174954.3:c.*739C>T, NM_174954.2:c.*739C>T, NM_174956.3:c.*739C>T, NM_174956.2:c.*739C>T, NM_174955.3:c.*684C>T, NM_174955.2:c.*684C>T, NM_174957.3:c.*728C>T, NM_174957.2:c.*728C>T, NM_174958.3:c.*145C>T, NM_174958.2:c.*145C>T, XM_011523888.3:c.*739C>T, XM_011523888.2:c.*739C>T, XM_011523885.2:c.*684C>T, XM_011523885.1:c.*684C>T, XM_047436152.1:c.*145C>T, XM_047436150.1:c.*93C>T, XM_047436151.1:c.*93C>T, XM_047436153.1:c.*134C>T
15.
rs1490906794 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>G
[Show Flanks]
- Chromosome:
- 17:3938686
(GRCh38)
17:3841980
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3938685:T:G
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000014/2
(GnomAD)
G=0.000015/4
(TOPMED)
- HGVS:
16.
rs1490796912 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 17:3943183
(GRCh38)
17:3846477
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3943182:A:G
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0.000071/1
(
ALFA)
G=0.000007/1
(GnomAD)
G=0.000011/3
(TOPMED)
- HGVS:
17.
rs1490772132 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 17:3944077
(GRCh38)
17:3847371
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3944076:C:T
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
T=0.000014/2
(GnomAD)
- HGVS:
19.
rs1490708184 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 17:3957433
(GRCh38)
17:3860727
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3957432:A:G
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
G=0./0
(
ALFA)
G=0.000029/4
(GnomAD)
- HGVS:
20.
rs1490600592 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A
[Show Flanks]
- Chromosome:
- 17:3964081
(GRCh38)
17:3867375
(GRCh37)
- Canonical SPDI:
- NC_000017.11:3964080:C:A
- Gene:
- ATP2A3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000007/1
(GnomAD)
A=0.000008/2
(TOPMED)
- HGVS: