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1.

rs1491552159 has merged into rs70965149 [Homo sapiens]
    Variant type:
    DELINS
    Alleles:
    AAAAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
    Chromosome:
    2:63900233 (GRCh38)
    2:64127367 (GRCh37)
    Canonical SPDI:
    NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:63900220:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    Gene:
    VPS54 (Varview)
    Functional Consequence:
    intron_variant,genic_downstream_transcript_variant
    Validated:
    by frequency,by alfa,by cluster
    MAF:
    AAAAAAAAAAAAA=0./0 (ALFA)
    HGVS:
    NC_000002.12:g.63900233_63900244del, NC_000002.12:g.63900234_63900244del, NC_000002.12:g.63900235_63900244del, NC_000002.12:g.63900236_63900244del, NC_000002.12:g.63900237_63900244del, NC_000002.12:g.63900238_63900244del, NC_000002.12:g.63900239_63900244del, NC_000002.12:g.63900240_63900244del, NC_000002.12:g.63900241_63900244del, NC_000002.12:g.63900242_63900244del, NC_000002.12:g.63900243_63900244del, NC_000002.12:g.63900244del, NC_000002.12:g.63900244dup, NC_000002.12:g.63900243_63900244dup, NC_000002.12:g.63900242_63900244dup, NC_000002.12:g.63900241_63900244dup, NC_000002.12:g.63900240_63900244dup, NC_000002.12:g.63900239_63900244dup, NC_000002.12:g.63900238_63900244dup, NC_000002.12:g.63900237_63900244dup, NC_000002.12:g.63900236_63900244dup, NC_000002.12:g.63900222_63900244dup, NC_000002.12:g.63900244_63900245insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000002.12:g.63900244_63900245insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000002.12:g.63900244_63900245insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000002.12:g.63900244_63900245insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000002.11:g.64127367_64127378del, NC_000002.11:g.64127368_64127378del, NC_000002.11:g.64127369_64127378del, NC_000002.11:g.64127370_64127378del, NC_000002.11:g.64127371_64127378del, NC_000002.11:g.64127372_64127378del, NC_000002.11:g.64127373_64127378del, NC_000002.11:g.64127374_64127378del, NC_000002.11:g.64127375_64127378del, NC_000002.11:g.64127376_64127378del, NC_000002.11:g.64127377_64127378del, NC_000002.11:g.64127378del, NC_000002.11:g.64127378dup, NC_000002.11:g.64127377_64127378dup, NC_000002.11:g.64127376_64127378dup, NC_000002.11:g.64127375_64127378dup, NC_000002.11:g.64127374_64127378dup, NC_000002.11:g.64127373_64127378dup, NC_000002.11:g.64127372_64127378dup, NC_000002.11:g.64127371_64127378dup, NC_000002.11:g.64127370_64127378dup, NC_000002.11:g.64127356_64127378dup, NC_000002.11:g.64127378_64127379insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000002.11:g.64127378_64127379insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000002.11:g.64127378_64127379insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000002.11:g.64127378_64127379insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NG_042277.1:g.123849_123860del, NG_042277.1:g.123850_123860del, NG_042277.1:g.123851_123860del, NG_042277.1:g.123852_123860del, NG_042277.1:g.123853_123860del, NG_042277.1:g.123854_123860del, NG_042277.1:g.123855_123860del, NG_042277.1:g.123856_123860del, NG_042277.1:g.123857_123860del, NG_042277.1:g.123858_123860del, NG_042277.1:g.123859_123860del, NG_042277.1:g.123860del, NG_042277.1:g.123860dup, NG_042277.1:g.123859_123860dup, NG_042277.1:g.123858_123860dup, NG_042277.1:g.123857_123860dup, NG_042277.1:g.123856_123860dup, NG_042277.1:g.123855_123860dup, NG_042277.1:g.123854_123860dup, NG_042277.1:g.123853_123860dup, NG_042277.1:g.123852_123860dup, NG_042277.1:g.123838_123860dup, NG_042277.1:g.123860_123861insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NG_042277.1:g.123860_123861insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NG_042277.1:g.123860_123861insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NG_042277.1:g.123860_123861insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
    2.

    rs1491551585 [Homo sapiens]
      Variant type:
      DEL
      Alleles:
      GA>- [Show Flanks]
      Chromosome:
      2:64018747 (GRCh38)
      2:64245881 (GRCh37)
      Canonical SPDI:
      NC_000002.12:64018746:GA:
      Gene:
      VPS54 (Varview)
      Functional Consequence:
      intron_variant,genic_upstream_transcript_variant
      Validated:
      by frequency,by alfa
      MAF:
      -=0./0 (ALFA)
      -=0.00004/2 (GnomAD)
      HGVS:
      3.

      rs1491538025 [Homo sapiens]
        Variant type:
        DEL
        Alleles:
        CA>- [Show Flanks]
        Chromosome:
        2:63957441 (GRCh38)
        2:64184575 (GRCh37)
        Canonical SPDI:
        NC_000002.12:63957440:CA:
        Gene:
        VPS54 (Varview)
        Functional Consequence:
        intron_variant
        Validated:
        by frequency,by alfa
        MAF:
        -=0./0 (ALFA)
        HGVS:
        4.

        rs1491502753 has merged into rs560700373 [Homo sapiens]
          Variant type:
          DELINS
          Alleles:
          TTTTTTTTTTT>-,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
          Chromosome:
          2:63948425 (GRCh38)
          2:64175559 (GRCh37)
          Canonical SPDI:
          NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63948414:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
          Gene:
          VPS54 (Varview)
          Functional Consequence:
          intron_variant
          Validated:
          by frequency,by alfa,by cluster
          MAF:
          TTTTTTTTTTTTTTTT=0./0 (ALFA)
          TTTTTTT=0.027/15 (NorthernSweden)
          -=0.2364/1184 (1000Genomes)
          T=0.475/19 (GENOME_DK)
          HGVS:
          NC_000002.12:g.63948425_63948435del, NC_000002.12:g.63948431_63948435del, NC_000002.12:g.63948432_63948435del, NC_000002.12:g.63948433_63948435del, NC_000002.12:g.63948434_63948435del, NC_000002.12:g.63948435del, NC_000002.12:g.63948435dup, NC_000002.12:g.63948434_63948435dup, NC_000002.12:g.63948433_63948435dup, NC_000002.12:g.63948432_63948435dup, NC_000002.12:g.63948431_63948435dup, NC_000002.12:g.63948430_63948435dup, NC_000002.12:g.63948429_63948435dup, NC_000002.12:g.63948428_63948435dup, NC_000002.12:g.63948415_63948435T[29]GTTTTTTTTTTTTTTTTTTTTTT[1], NC_000002.12:g.63948427_63948435dup, NC_000002.12:g.63948426_63948435dup, NC_000002.12:g.63948423_63948435dup, NC_000002.12:g.63948422_63948435dup, NC_000002.11:g.64175559_64175569del, NC_000002.11:g.64175565_64175569del, NC_000002.11:g.64175566_64175569del, NC_000002.11:g.64175567_64175569del, NC_000002.11:g.64175568_64175569del, NC_000002.11:g.64175569del, NC_000002.11:g.64175569dup, NC_000002.11:g.64175568_64175569dup, NC_000002.11:g.64175567_64175569dup, NC_000002.11:g.64175566_64175569dup, NC_000002.11:g.64175565_64175569dup, NC_000002.11:g.64175564_64175569dup, NC_000002.11:g.64175563_64175569dup, NC_000002.11:g.64175562_64175569dup, NC_000002.11:g.64175549_64175569T[29]GTTTTTTTTTTTTTTTTTTTTTT[1], NC_000002.11:g.64175561_64175569dup, NC_000002.11:g.64175560_64175569dup, NC_000002.11:g.64175557_64175569dup, NC_000002.11:g.64175556_64175569dup, NG_042277.1:g.75656_75666del, NG_042277.1:g.75662_75666del, NG_042277.1:g.75663_75666del, NG_042277.1:g.75664_75666del, NG_042277.1:g.75665_75666del, NG_042277.1:g.75666del, NG_042277.1:g.75666dup, NG_042277.1:g.75665_75666dup, NG_042277.1:g.75664_75666dup, NG_042277.1:g.75663_75666dup, NG_042277.1:g.75662_75666dup, NG_042277.1:g.75661_75666dup, NG_042277.1:g.75660_75666dup, NG_042277.1:g.75659_75666dup, NG_042277.1:g.75646_75666A[22]CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA[1], NG_042277.1:g.75658_75666dup, NG_042277.1:g.75657_75666dup, NG_042277.1:g.75654_75666dup, NG_042277.1:g.75653_75666dup
          5.

          rs1491496286 has merged into rs11316408 [Homo sapiens]
            Variant type:
            DELINS
            Alleles:
            AAAAAAAAAAAA>-,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA [Show Flanks]
            Chromosome:
            2:64012465 (GRCh38)
            2:64239599 (GRCh37)
            Canonical SPDI:
            NC_000002.12:64012455:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000002.12:64012455:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000002.12:64012455:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000002.12:64012455:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000002.12:64012455:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000002.12:64012455:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000002.12:64012455:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000002.12:64012455:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000002.12:64012455:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000002.12:64012455:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:64012455:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:64012455:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA
            Gene:
            VPS54 (Varview)
            Functional Consequence:
            upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
            Validated:
            by frequency,by alfa,by cluster
            MAF:
            AAAAAAAAAAAAAA=0./0 (ALFA)
            A=0.4359/2183 (1000Genomes)
            HGVS:
            NC_000002.12:g.64012465_64012476del, NC_000002.12:g.64012469_64012476del, NC_000002.12:g.64012470_64012476del, NC_000002.12:g.64012471_64012476del, NC_000002.12:g.64012472_64012476del, NC_000002.12:g.64012473_64012476del, NC_000002.12:g.64012474_64012476del, NC_000002.12:g.64012475_64012476del, NC_000002.12:g.64012476del, NC_000002.12:g.64012476dup, NC_000002.12:g.64012475_64012476dup, NC_000002.12:g.64012471_64012476dup, NC_000002.11:g.64239599_64239610del, NC_000002.11:g.64239603_64239610del, NC_000002.11:g.64239604_64239610del, NC_000002.11:g.64239605_64239610del, NC_000002.11:g.64239606_64239610del, NC_000002.11:g.64239607_64239610del, NC_000002.11:g.64239608_64239610del, NC_000002.11:g.64239609_64239610del, NC_000002.11:g.64239610del, NC_000002.11:g.64239610dup, NC_000002.11:g.64239609_64239610dup, NC_000002.11:g.64239605_64239610dup, NG_042277.1:g.11614_11625del, NG_042277.1:g.11618_11625del, NG_042277.1:g.11619_11625del, NG_042277.1:g.11620_11625del, NG_042277.1:g.11621_11625del, NG_042277.1:g.11622_11625del, NG_042277.1:g.11623_11625del, NG_042277.1:g.11624_11625del, NG_042277.1:g.11625del, NG_042277.1:g.11625dup, NG_042277.1:g.11624_11625dup, NG_042277.1:g.11620_11625dup
            6.

            rs1491478171 has merged into rs1174931536 [Homo sapiens]
              Variant type:
              DELINS
              Alleles:
              TTTTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
              Chromosome:
              2:63976834 (GRCh38)
              2:64203968 (GRCh37)
              Canonical SPDI:
              NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:63976825:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
              Gene:
              VPS54 (Varview)
              Functional Consequence:
              intron_variant
              Validated:
              by frequency,by alfa,by cluster
              MAF:
              TTTTTTTTT=0./0 (ALFA)
              -=0.000015/4 (TOPMED)
              HGVS:
              NC_000002.12:g.63976834_63976846del, NC_000002.12:g.63976835_63976846del, NC_000002.12:g.63976836_63976846del, NC_000002.12:g.63976837_63976846del, NC_000002.12:g.63976838_63976846del, NC_000002.12:g.63976840_63976846del, NC_000002.12:g.63976841_63976846del, NC_000002.12:g.63976842_63976846del, NC_000002.12:g.63976843_63976846del, NC_000002.12:g.63976844_63976846del, NC_000002.12:g.63976845_63976846del, NC_000002.12:g.63976846del, NC_000002.12:g.63976846dup, NC_000002.12:g.63976845_63976846dup, NC_000002.12:g.63976844_63976846dup, NC_000002.12:g.63976826_63976846T[24]AAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTT[1], NC_000002.12:g.63976843_63976846dup, NC_000002.12:g.63976842_63976846dup, NC_000002.12:g.63976841_63976846dup, NC_000002.12:g.63976840_63976846dup, NC_000002.12:g.63976839_63976846dup, NC_000002.12:g.63976838_63976846dup, NC_000002.12:g.63976837_63976846dup, NC_000002.12:g.63976836_63976846dup, NC_000002.12:g.63976835_63976846dup, NC_000002.12:g.63976834_63976846dup, NC_000002.12:g.63976833_63976846dup, NC_000002.12:g.63976832_63976846dup, NC_000002.12:g.63976831_63976846dup, NC_000002.12:g.63976829_63976846dup, NC_000002.12:g.63976826_63976846dup, NC_000002.12:g.63976846_63976847insTTTTTTTTTTTTTTTTTTTTTT, NC_000002.12:g.63976846_63976847insTTTTTTTTTTTTTTTTTTTTTTT, NC_000002.11:g.64203968_64203980del, NC_000002.11:g.64203969_64203980del, NC_000002.11:g.64203970_64203980del, NC_000002.11:g.64203971_64203980del, NC_000002.11:g.64203972_64203980del, NC_000002.11:g.64203974_64203980del, NC_000002.11:g.64203975_64203980del, NC_000002.11:g.64203976_64203980del, NC_000002.11:g.64203977_64203980del, NC_000002.11:g.64203978_64203980del, NC_000002.11:g.64203979_64203980del, NC_000002.11:g.64203980del, NC_000002.11:g.64203980dup, NC_000002.11:g.64203979_64203980dup, NC_000002.11:g.64203978_64203980dup, NC_000002.11:g.64203960_64203980T[24]AAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTT[1], NC_000002.11:g.64203977_64203980dup, NC_000002.11:g.64203976_64203980dup, NC_000002.11:g.64203975_64203980dup, NC_000002.11:g.64203974_64203980dup, NC_000002.11:g.64203973_64203980dup, NC_000002.11:g.64203972_64203980dup, NC_000002.11:g.64203971_64203980dup, NC_000002.11:g.64203970_64203980dup, NC_000002.11:g.64203969_64203980dup, NC_000002.11:g.64203968_64203980dup, NC_000002.11:g.64203967_64203980dup, NC_000002.11:g.64203966_64203980dup, NC_000002.11:g.64203965_64203980dup, NC_000002.11:g.64203963_64203980dup, NC_000002.11:g.64203960_64203980dup, NC_000002.11:g.64203980_64203981insTTTTTTTTTTTTTTTTTTTTTT, NC_000002.11:g.64203980_64203981insTTTTTTTTTTTTTTTTTTTTTTT, NG_042277.1:g.47243_47255del, NG_042277.1:g.47244_47255del, NG_042277.1:g.47245_47255del, NG_042277.1:g.47246_47255del, NG_042277.1:g.47247_47255del, NG_042277.1:g.47249_47255del, NG_042277.1:g.47250_47255del, NG_042277.1:g.47251_47255del, NG_042277.1:g.47252_47255del, NG_042277.1:g.47253_47255del, NG_042277.1:g.47254_47255del, NG_042277.1:g.47255del, NG_042277.1:g.47255dup, NG_042277.1:g.47254_47255dup, NG_042277.1:g.47253_47255dup, NG_042277.1:g.47235_47255A[30]TTTAAAAAAAAAAAAAAAAAAAAAAAA[1], NG_042277.1:g.47252_47255dup, NG_042277.1:g.47251_47255dup, NG_042277.1:g.47250_47255dup, NG_042277.1:g.47249_47255dup, NG_042277.1:g.47248_47255dup, NG_042277.1:g.47247_47255dup, NG_042277.1:g.47246_47255dup, NG_042277.1:g.47245_47255dup, NG_042277.1:g.47244_47255dup, NG_042277.1:g.47243_47255dup, NG_042277.1:g.47242_47255dup, NG_042277.1:g.47241_47255dup, NG_042277.1:g.47240_47255dup, NG_042277.1:g.47238_47255dup, NG_042277.1:g.47235_47255dup, NG_042277.1:g.47255_47256insAAAAAAAAAAAAAAAAAAAAAA, NG_042277.1:g.47255_47256insAAAAAAAAAAAAAAAAAAAAAAA
              7.

              rs1491470159 has merged into rs560705872 [Homo sapiens]
                Variant type:
                DELINS
                Alleles:
                TATATATA>-,TA,TATA,TATATA,TATATATATA,TATATATATATA [Show Flanks]
                Chromosome:
                2:63970206 (GRCh38)
                2:64197340 (GRCh37)
                Canonical SPDI:
                NC_000002.12:63970202:ATATATATATA:ATA,NC_000002.12:63970202:ATATATATATA:ATATA,NC_000002.12:63970202:ATATATATATA:ATATATA,NC_000002.12:63970202:ATATATATATA:ATATATATA,NC_000002.12:63970202:ATATATATATA:ATATATATATATA,NC_000002.12:63970202:ATATATATATA:ATATATATATATATA
                Gene:
                VPS54 (Varview)
                Functional Consequence:
                intron_variant
                Validated:
                by frequency,by alfa,by cluster
                MAF:
                ATATATATATATA=0./0 (ALFA)
                HGVS:
                8.

                rs1491464971 [Homo sapiens]
                  Variant type:
                  INS
                  Alleles:
                  ->C [Show Flanks]
                  Chromosome:
                  2:63915152 (GRCh38)
                  2:64142287 (GRCh37)
                  Canonical SPDI:
                  NC_000002.12:63915152::C
                  Gene:
                  VPS54 (Varview)
                  Functional Consequence:
                  intron_variant,genic_downstream_transcript_variant
                  Validated:
                  by frequency,by alfa
                  MAF:
                  C=0./0 (ALFA)
                  C=0.000004/1 (TOPMED)
                  HGVS:
                  9.

                  rs1491451363 [Homo sapiens]
                    Variant type:
                    DEL
                    Alleles:
                    AG>- [Show Flanks]
                    Chromosome:
                    2:63974971 (GRCh38)
                    2:64202105 (GRCh37)
                    Canonical SPDI:
                    NC_000002.12:63974970:AG:
                    Gene:
                    VPS54 (Varview)
                    Functional Consequence:
                    intron_variant
                    Validated:
                    by frequency,by alfa,by cluster
                    MAF:
                    -=0./0 (ALFA)
                    -=0.000008/2 (TOPMED)
                    -=0.000014/2 (GnomAD)
                    HGVS:
                    10.

                    rs1491441875 [Homo sapiens]
                      Variant type:
                      DEL
                      Alleles:
                      CT>- [Show Flanks]
                      Chromosome:
                      2:63951206 (GRCh38)
                      2:64178340 (GRCh37)
                      Canonical SPDI:
                      NC_000002.12:63951205:CT:
                      Gene:
                      VPS54 (Varview)
                      Functional Consequence:
                      intron_variant
                      Validated:
                      by frequency,by alfa
                      MAF:
                      -=0.000253/3 (ALFA)
                      -=0.000173/18 (GnomAD)
                      HGVS:
                      11.

                      rs1491348104 [Homo sapiens]
                        Variant type:
                        INS
                        Alleles:
                        ->TAT [Show Flanks]
                        Chromosome:
                        2:63942257 (GRCh38)
                        2:64169392 (GRCh37)
                        Canonical SPDI:
                        NC_000002.12:63942257::TAT
                        Gene:
                        VPS54 (Varview)
                        Functional Consequence:
                        intron_variant
                        Validated:
                        by frequency,by alfa
                        MAF:
                        TAT=0./0 (ALFA)
                        HGVS:
                        12.

                        rs1491314482 has merged into rs1336592832 [Homo sapiens]
                          Variant type:
                          DELINS
                          Alleles:
                          TA>-,TATA,TATATA,TATATATA,TATATATATATATATATATATA [Show Flanks]
                          Chromosome:
                          2:63970252 (GRCh38)
                          2:64197386 (GRCh37)
                          Canonical SPDI:
                          NC_000002.12:63970242:ATATATATATA:ATATATATA,NC_000002.12:63970242:ATATATATATA:ATATATATATATA,NC_000002.12:63970242:ATATATATATA:ATATATATATATATA,NC_000002.12:63970242:ATATATATATA:ATATATATATATATATA,NC_000002.12:63970242:ATATATATATA:ATATATATATATATATATATATATATATATA
                          Gene:
                          VPS54 (Varview)
                          Functional Consequence:
                          intron_variant
                          Validated:
                          by frequency,by alfa,by cluster
                          MAF:
                          ATATATATATATA=0./0 (ALFA)
                          HGVS:
                          13.

                          rs1491265138 has merged into rs1319743844 [Homo sapiens]
                            Variant type:
                            DELINS
                            Alleles:
                            GA>- [Show Flanks]
                            Chromosome:
                            2:63970254 (GRCh38)
                            2:64197388 (GRCh37)
                            Canonical SPDI:
                            NC_000002.12:63970252:AGA:A
                            Gene:
                            VPS54 (Varview)
                            Functional Consequence:
                            intron_variant
                            Validated:
                            by frequency,by cluster
                            MAF:
                            -=0.00001/1 (GnomAD)
                            HGVS:
                            14.

                            rs1491233253 [Homo sapiens]
                              Variant type:
                              DEL
                              Alleles:
                              AA>- [Show Flanks]
                              Chromosome:
                              2:63970242 (GRCh38)
                              2:64197376 (GRCh37)
                              Canonical SPDI:
                              NC_000002.12:63970241:AA:
                              Gene:
                              VPS54 (Varview)
                              Functional Consequence:
                              intron_variant
                              Validated:
                              by frequency,by alfa
                              MAF:
                              -=0./0 (ALFA)
                              HGVS:
                              15.

                              rs1491233060 [Homo sapiens]
                                Variant type:
                                DEL
                                Alleles:
                                TC>- [Show Flanks]
                                Chromosome:
                                2:63929704 (GRCh38)
                                2:64156838 (GRCh37)
                                Canonical SPDI:
                                NC_000002.12:63929703:TC:
                                Gene:
                                VPS54 (Varview)
                                Functional Consequence:
                                intron_variant,genic_downstream_transcript_variant
                                Validated:
                                by frequency
                                MAF:
                                -=0.000008/1 (GnomAD)
                                HGVS:
                                16.

                                rs1491219511 [Homo sapiens]
                                  Variant type:
                                  DELINS
                                  Alleles:
                                  TGATATATAT>-,TGATATATATTGATATATAT [Show Flanks]
                                  Chromosome:
                                  2:64013660 (GRCh38)
                                  2:64240794 (GRCh37)
                                  Canonical SPDI:
                                  NC_000002.12:64013650:GATATATATTGATATATAT:GATATATAT,NC_000002.12:64013650:GATATATATTGATATATAT:GATATATATTGATATATATTGATATATAT
                                  Gene:
                                  VPS54 (Varview)
                                  Functional Consequence:
                                  upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
                                  Validated:
                                  by frequency,by alfa
                                  MAF:
                                  GATATATATTGATATATATTGATATATAT=0./0 (ALFA)
                                  HGVS:
                                  17.

                                  rs1491213109 has merged into rs35913134 [Homo sapiens]
                                    Variant type:
                                    DELINS
                                    Alleles:
                                    AAAAAAAA>-,A,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA [Show Flanks]
                                    Chromosome:
                                    2:64018758 (GRCh38)
                                    2:64245892 (GRCh37)
                                    Canonical SPDI:
                                    NC_000002.12:64018747:AAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000002.12:64018747:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000002.12:64018747:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000002.12:64018747:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000002.12:64018747:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000002.12:64018747:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000002.12:64018747:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000002.12:64018747:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000002.12:64018747:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA
                                    Gene:
                                    VPS54 (Varview)
                                    Functional Consequence:
                                    intron_variant,genic_upstream_transcript_variant
                                    Validated:
                                    by frequency,by alfa,by cluster
                                    MAF:
                                    AAAAAAAAAAA=0./0 (ALFA)
                                    -=0.1025/395 (ALSPAC)
                                    A=0.4687/2347 (1000Genomes)
                                    HGVS:
                                    NC_000002.12:g.64018758_64018765del, NC_000002.12:g.64018759_64018765del, NC_000002.12:g.64018762_64018765del, NC_000002.12:g.64018763_64018765del, NC_000002.12:g.64018764_64018765del, NC_000002.12:g.64018765del, NC_000002.12:g.64018765dup, NC_000002.12:g.64018764_64018765dup, NC_000002.12:g.64018763_64018765dup, NC_000002.11:g.64245892_64245899del, NC_000002.11:g.64245893_64245899del, NC_000002.11:g.64245896_64245899del, NC_000002.11:g.64245897_64245899del, NC_000002.11:g.64245898_64245899del, NC_000002.11:g.64245899del, NC_000002.11:g.64245899dup, NC_000002.11:g.64245898_64245899dup, NC_000002.11:g.64245897_64245899dup, NG_042277.1:g.5326_5333del, NG_042277.1:g.5327_5333del, NG_042277.1:g.5330_5333del, NG_042277.1:g.5331_5333del, NG_042277.1:g.5332_5333del, NG_042277.1:g.5333del, NG_042277.1:g.5333dup, NG_042277.1:g.5332_5333dup, NG_042277.1:g.5331_5333dup
                                    18.

                                    rs1491197444 [Homo sapiens]
                                      Variant type:
                                      DELINS
                                      Alleles:
                                      GA>-,GAGA [Show Flanks]
                                      Chromosome:
                                      2:64013651 (GRCh38)
                                      2:64240785 (GRCh37)
                                      Canonical SPDI:
                                      NC_000002.12:64013649:AGA:A,NC_000002.12:64013649:AGA:AGAGA
                                      Gene:
                                      VPS54 (Varview)
                                      Functional Consequence:
                                      upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
                                      Validated:
                                      by frequency,by alfa,by cluster
                                      MAF:
                                      AGAGA=0./0 (ALFA)
                                      AG=0./0 (GnomAD)
                                      -=0.000071/1 (TOMMO)
                                      -=0.001116/2 (Korea1K)
                                      HGVS:
                                      19.

                                      rs1491189848 [Homo sapiens]
                                        Variant type:
                                        DELINS
                                        Alleles:
                                        ->CA,CACA,CACACA,CACACACA,CACACACACA,CACACACACACA,CACACACACACACA [Show Flanks]
                                        Chromosome:
                                        2:63985678 (GRCh38)
                                        2:64212813 (GRCh37)
                                        Canonical SPDI:
                                        NC_000002.12:63985678:A:ACA,NC_000002.12:63985678:A:ACACA,NC_000002.12:63985678:A:ACACACA,NC_000002.12:63985678:A:ACACACACA,NC_000002.12:63985678:A:ACACACACACA,NC_000002.12:63985678:A:ACACACACACACA,NC_000002.12:63985678:A:ACACACACACACACA
                                        Gene:
                                        VPS54 (Varview)
                                        Functional Consequence:
                                        intron_variant
                                        Validated:
                                        by frequency,by alfa,by cluster
                                        MAF:
                                        ACACA=0./0 (ALFA)
                                        HGVS:
                                        20.

                                        rs1491188624 [Homo sapiens]
                                          Variant type:
                                          DELINS
                                          Alleles:
                                          ->G [Show Flanks]
                                          Chromosome:
                                          2:63974971 (GRCh38)
                                          2:64202106 (GRCh37)
                                          Canonical SPDI:
                                          NC_000002.12:63974971:GGGG:GGGGG
                                          Gene:
                                          VPS54 (Varview)
                                          Functional Consequence:
                                          intron_variant
                                          Validated:
                                          by frequency,by alfa,by cluster
                                          MAF:
                                          GGGGG=0./0 (ALFA)
                                          G=0.000007/1 (GnomAD_exomes)
                                          G=0.000008/2 (TOPMED)
                                          HGVS:

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