SNP Links for Gene (Select 54089) - SNP

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Select item 14894895541.

rs1489489554 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:41716991 (GRCh38)
21:43137151 (GRCh37)
Canonical SPDI:: NC_000021.9:41716990:C:T
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000021.9:g.41716991C>T, NC_000021.8:g.43137151C>T

Select item 14886838472.

rs1488683847 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:41716631 (GRCh38)
21:43136791 (GRCh37)
Canonical SPDI:: NC_000021.9:41716630:G:A
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.41716631G>A, NC_000021.8:g.43136791G>A

Select item 14878675273.

rs1487867527 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:41716529 (GRCh38)
21:43136689 (GRCh37)
Canonical SPDI:: NC_000021.9:41716528:G:A
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000021.9:g.41716529G>A, NC_000021.8:g.43136689G>A, NR_024028.2:n.94G>A

Select item 14874363684.

rs1487436368 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:41715216 (GRCh38)
21:43135376 (GRCh37)
Canonical SPDI:: NC_000021.9:41715215:G:A
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.41715216G>A, NC_000021.8:g.43135376G>A, NR_027272.1:n.102C>T, NM_152506.1:c.-140C>T

Select item 14866152335.

rs1486615233 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:41716008 (GRCh38)
21:43136168 (GRCh37)
Canonical SPDI:: NC_000021.9:41716007:C:T
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000356/5 (ALFA)
T=0.000079/11 (GnomAD)
T=0.000094/25 (TOPMED)
HGVS:: NC_000021.9:g.41716008C>T, NC_000021.8:g.43136168C>T

Select item 14862166676.

rs1486216667 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 21:41717862 (GRCh38)
21:43138022 (GRCh37)
Canonical SPDI:: NC_000021.9:41717861:A:C
Gene:: LINC00112 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.00003/8 (TOPMED)
C=0.000043/6 (GnomAD)
HGVS:: NC_000021.9:g.41717862A>C, NC_000021.8:g.43138022A>C

Select item 14854194037.

rs1485419403 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 21:41717521 (GRCh38)
21:43137681 (GRCh37)
Canonical SPDI:: NC_000021.9:41717520:T:C
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.41717521T>C, NC_000021.8:g.43137681T>C, NR_024028.2:n.463T>C

Select item 14851052898.

rs1485105289 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 21:41717157 (GRCh38)
21:43137317 (GRCh37)
Canonical SPDI:: NC_000021.9:41717156:A:G
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
HGVS:: NC_000021.9:g.41717157A>G, NC_000021.8:g.43137317A>G, NR_024028.2:n.266A>G

Select item 14846252579.

rs1484625257 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:41717488 (GRCh38)
21:43137648 (GRCh37)
Canonical SPDI:: NC_000021.9:41717487:C:T
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.41717488C>T, NC_000021.8:g.43137648C>T, NR_024028.2:n.430C>T

Select item 148366322410.

rs1483663224 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:41716913 (GRCh38)
21:43137073 (GRCh37)
Canonical SPDI:: NC_000021.9:41716912:G:A
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.41716913G>A, NC_000021.8:g.43137073G>A

Select item 148201002011.

rs1482010020 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 21:41715554 (GRCh38)
21:43135714 (GRCh37)
Canonical SPDI:: NC_000021.9:41715553:G:A,NC_000021.9:41715553:G:C
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
C=0.000342/1 (KOREAN)
HGVS:: NC_000021.9:g.41715554G>A, NC_000021.9:g.41715554G>C, NC_000021.8:g.43135714G>A, NC_000021.8:g.43135714G>C

Select item 148198038112.

rs1481980381 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:41716513 (GRCh38)
21:43136673 (GRCh37)
Canonical SPDI:: NC_000021.9:41716512:C:T
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.41716513C>T, NC_000021.8:g.43136673C>T, NR_024028.2:n.78C>T

Select item 148053929213.

rs1480539292 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 21:41715709 (GRCh38)
21:43135869 (GRCh37)
Canonical SPDI:: NC_000021.9:41715708:T:C
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.41715709T>C, NC_000021.8:g.43135869T>C

Select item 148019045914.

rs1480190459 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 21:41714646 (GRCh38)
21:43134806 (GRCh37)
Canonical SPDI:: NC_000021.9:41714645:G:C
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.41714646G>C, NC_000021.8:g.43134806G>C

Select item 147910044415.

rs1479100444 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 21:41717224 (GRCh38)
21:43137384 (GRCh37)
Canonical SPDI:: NC_000021.9:41717223:A:G
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
HGVS:: NC_000021.9:g.41717224A>G, NC_000021.8:g.43137384A>G

Select item 147895367216.

rs1478953672 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 21:41714552 (GRCh38)
21:43134712 (GRCh37)
Canonical SPDI:: NC_000021.9:41714551:C:
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000021.9:g.41714552del, NC_000021.8:g.43134712del

Select item 147888543817.

rs1478885438 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:41717063 (GRCh38)
21:43137223 (GRCh37)
Canonical SPDI:: NC_000021.9:41717062:C:T
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000021.9:g.41717063C>T, NC_000021.8:g.43137223C>T, NR_024028.2:n.172C>T

Select item 147792791718.

rs1477927917 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 21:41716281 (GRCh38)
21:43136441 (GRCh37)
Canonical SPDI:: NC_000021.9:41716280:C:A
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.41716281C>A, NC_000021.8:g.43136441C>A

Select item 147692088319.

rs1476920883 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:41715302 (GRCh38)
21:43135462 (GRCh37)
Canonical SPDI:: NC_000021.9:41715301:G:A
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.41715302G>A, NC_000021.8:g.43135462G>A

Select item 147614568820.

rs1476145688 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:41714681 (GRCh38)
21:43134841 (GRCh37)
Canonical SPDI:: NC_000021.9:41714680:C:T
Gene:: LINC00112 (Varview), LINC00479 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.41714681C>T, NC_000021.8:g.43134841C>T

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