SNP Links for Gene (Select 541465) - SNP

Links from Gene

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Select item 14889637261.

rs1488963726 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:135803908 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135803907:G:A
Gene:: CT45A6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.30905/3666 (ALFA)
A=0.04587/15 (TOMMO)
HGVS:: NC_000023.11:g.135803908G>A, NW_004070887.1:g.735051G>A

Select item 14864562692.

rs1486456269 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:135797393 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135797392:C:T
Gene:: CT45A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.01745/207 (ALFA)
T=0.00009/2 (TOMMO)
T=0.00027/14 (GnomAD)
HGVS:: NC_000023.11:g.135797393C>T, NW_004070887.1:g.728536C>T

Select item 14838101723.

rs1483810172 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: X:135797665 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135797664:G:T
Gene:: CT45A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.0215/255 (ALFA)
HGVS:: NC_000023.11:g.135797665G>T, NW_004070887.1:g.728808G>T

Select item 14743788574.

rs1474378857 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:135797346 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135797345:T:C
Gene:: CT45A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000023.11:g.135797346T>C, NW_004070887.1:g.728489T>C

Select item 14738705825.

rs1473870582 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: X:135797436 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135797435:C:G,NC_000023.11:135797435:C:T
Gene:: CT45A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000023.11:g.135797436C>G, NC_000023.11:g.135797436C>T, NW_004070887.1:g.728579C>G, NW_004070887.1:g.728579C>T

Select item 14733961886.

rs1473396188 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: X:135798252 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135798252:TTTTT:TTTTTT
Gene:: CT45A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TTTTT=0.45304/5374 (ALFA)
HGVS:: NC_000023.11:g.135798257dup, NW_004070887.1:g.729400dup

Select item 14728432807.

rs1472843280 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: X:135798377 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135798376:GGGGGGG:GGGGGG
Gene:: CT45A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: GGGGGG=0./0 (ALFA)
HGVS:: NC_000023.11:g.135798383del, NW_004070887.1:g.729526del

Select item 14689312948.

rs1468931294 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: X:135797641 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135797640:C:G,NC_000023.11:135797640:C:T
Gene:: CT45A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000023.11:g.135797641C>G, NC_000023.11:g.135797641C>T, NW_004070887.1:g.728784C>G, NW_004070887.1:g.728784C>T

Select item 14683211429.

rs1468321142 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:135797453 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135797452:C:T
Gene:: CT45A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000023.11:g.135797453C>T, NW_004070887.1:g.728596C>T

Select item 146698268810.

rs1466982688 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: X:135801530 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135801529:C:A
Gene:: CT45A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.14938/1772 (ALFA)
C=0.5/10 (TOMMO)
HGVS:: NC_000023.11:g.135801530C>A, NW_004070887.1:g.732673C>A

Select item 146072619011.

rs1460726190 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:135797432 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135797431:T:C
Gene:: CT45A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00396/47 (ALFA)
C=0.00031/20 (GnomAD)
HGVS:: NC_000023.11:g.135797432T>C, NW_004070887.1:g.728575T>C

Select item 145915124012.

rs1459151240 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:135798663 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135798662:G:C
Gene:: CT45A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000023.11:g.135798663G>C, NW_004070887.1:g.729806G>C

Select item 145812962513.

rs1458129625 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: X:135803119 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135803118:C:G
Gene:: CT45A6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.34092/4044 (ALFA)
G=0.18415/86 (TOMMO)
HGVS:: NC_000023.11:g.135803119C>G, NW_004070887.1:g.734262C>G

Select item 145419357114.

rs1454193571 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:135797041 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135797040:C:T
Gene:: CT45A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.00025/3 (ALFA)
T=0.00324/14 (GnomAD)
HGVS:: NC_000023.11:g.135797041C>T, NW_004070887.1:g.728184C>T

Select item 145417905515.

rs1454179055 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:135797495 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135797494:T:C
Gene:: CT45A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00002/1 (GnomAD)
HGVS:: NC_000023.11:g.135797495T>C, NW_004070887.1:g.728638T>C

Select item 145245677316.

rs1452456773 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:135803405 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135803404:G:A
Gene:: CT45A6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000023.11:g.135803405G>A, NW_004070887.1:g.734548G>A

Select item 144631332017.

rs1446313320 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: X:135798436 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135798435:C:A,NC_000023.11:135798435:C:G,NC_000023.11:135798435:C:T
Gene:: CT45A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000023.11:g.135798436C>A, NC_000023.11:g.135798436C>G, NC_000023.11:g.135798436C>T, NW_004070887.1:g.729579C>A, NW_004070887.1:g.729579C>G, NW_004070887.1:g.729579C>T

Select item 144299089218.

rs1442990892 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:135797697 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135797696:A:G
Gene:: CT45A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000023.11:g.135797697A>G, NW_004070887.1:g.728840A>G

Select item 144000775719.

rs1440007757 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: X:135797470 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135797469:A:C
Gene:: CT45A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.00017/2 (ALFA)
HGVS:: NC_000023.11:g.135797470A>C, NW_004070887.1:g.728613A>C

Select item 143973416320.

rs1439734163 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:135797589 (GRCh38)
X:-1 (GRCh37)
Canonical SPDI:: NC_000023.11:135797588:G:A
Gene:: CT45A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.18504/2195 (ALFA)
A=0.10396/2236 (TOMMO)
HGVS:: NC_000023.11:g.135797589G>A, NW_004070887.1:g.728732G>A

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