SNP Links for Gene (Select 54554) - SNP

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Select item 14900727501.

rs1490072750 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:122416160 (GRCh38)
3:122135007 (GRCh37)
Canonical SPDI:: NC_000003.12:122416159:G:A
Gene:: WDR5B (Varview), WDR5B-DT (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000003.12:g.122416160G>A, NC_000003.11:g.122135007G>A

Select item 14895262932.

rs1489526293 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:122411788 (GRCh38)
3:122130635 (GRCh37)
Canonical SPDI:: NC_000003.12:122411787:C:T
Gene:: FAM162A (Varview), WDR5B (Varview)
Functional Consequence:: downstream_transcript_variant,3_prime_UTR_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.122411788C>T, NC_000003.11:g.122130635C>T, NM_014367.4:c.*1957C>T

Select item 14881614323.

rs1488161432 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 3:122414391 (GRCh38)
3:122133238 (GRCh37)
Canonical SPDI:: NC_000003.12:122414390:C:G
Gene:: WDR5B (Varview), WDR5B-DT (Varview)
Functional Consequence:: upstream_transcript_variant,3_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.122414391C>G, NC_000003.11:g.122133238C>G, NM_019069.4:c.*145G>C, NM_019069.3:c.*145G>C

Select item 14873817244.

rs1487381724 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AC [Show Flanks]
Chromosome:: 3:122415840 (GRCh38)
3:122134688 (GRCh37)
Canonical SPDI:: NC_000003.12:122415840:AC:ACAC
Gene:: WDR5B (Varview), WDR5B-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACAC=0.000071/1 (ALFA)
AC=0.000021/3 (GnomAD)
AC=0.000026/7 (TOPMED)
HGVS:: NC_000003.12:g.122415841_122415842dup, NC_000003.11:g.122134688_122134689dup, NM_019069.4:c.-314_-313dup, NM_019069.3:c.-314_-313dup

Select item 14873154365.

rs1487315436 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:122411710 (GRCh38)
3:122130557 (GRCh37)
Canonical SPDI:: NC_000003.12:122411709:C:T
Gene:: FAM162A (Varview), WDR5B (Varview)
Functional Consequence:: downstream_transcript_variant,3_prime_UTR_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.122411710C>T, NC_000003.11:g.122130557C>T, NM_014367.4:c.*1879C>T

Select item 14867731036.

rs1486773103 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:122413914 (GRCh38)
3:122132761 (GRCh37)
Canonical SPDI:: NC_000003.12:122413913:C:T
Gene:: WDR5B (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000003.12:g.122413914C>T, NC_000003.11:g.122132761C>T, NM_019069.4:c.*622G>A, NM_019069.3:c.*622G>A

Select item 14863308067.

rs1486330806 [Homo sapiens]

Variant type:: INS
Alleles:: ->TT [Show Flanks]
Chromosome:: 3:122415232 (GRCh38)
3:122134080 (GRCh37)
Canonical SPDI:: NC_000003.12:122415232::TT
Gene:: WDR5B (Varview), WDR5B-DT (Varview)
Functional Consequence:: coding_sequence_variant,upstream_transcript_variant,frameshift_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
TT=0.000004/1 (GnomAD_exomes)
TT=0.000004/1 (TOPMED)
TT=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.122415232_122415233insTT, NC_000003.11:g.122134079_122134080insTT, NM_019069.4:c.296_297insAA, NM_019069.3:c.296_297insAA, NP_061942.2:p.Ser100fs

Select item 14859091988.

rs1485909198 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:122415437 (GRCh38)
3:122134284 (GRCh37)
Canonical SPDI:: NC_000003.12:122415436:T:C
Gene:: WDR5B (Varview), WDR5B-DT (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000012/3 (GnomAD_exomes)
C=0.000014/2 (GnomAD)
C=0.00006/16 (TOPMED)
HGVS:: NC_000003.12:g.122415437T>C, NC_000003.11:g.122134284T>C, NM_019069.4:c.92A>G, NM_019069.3:c.92A>G, NP_061942.2:p.Tyr31Cys

Select item 14855665409.

rs1485566540 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:122412474 (GRCh38)
3:122131321 (GRCh37)
Canonical SPDI:: NC_000003.12:122412473:A:G
Gene:: FAM162A (Varview), WDR5B (Varview)
Functional Consequence:: 3_prime_UTR_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.122412474A>G, NC_000003.11:g.122131321A>G, NM_019069.4:c.*2062T>C, NM_019069.3:c.*2062T>C

Select item 148527193710.

rs1485271937 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:122412857 (GRCh38)
3:122131704 (GRCh37)
Canonical SPDI:: NC_000003.12:122412856:T:C
Gene:: WDR5B (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000003.12:g.122412857T>C, NC_000003.11:g.122131704T>C, NM_019069.4:c.*1679A>G, NM_019069.3:c.*1679A>G

Select item 148520852611.

rs1485208526 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:122413097 (GRCh38)
3:122131944 (GRCh37)
Canonical SPDI:: NC_000003.12:122413096:T:C
Gene:: WDR5B (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.122413097T>C, NC_000003.11:g.122131944T>C, NM_019069.4:c.*1439A>G, NM_019069.3:c.*1439A>G

Select item 148513967512.

rs1485139675 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:122417373 (GRCh38)
3:122136220 (GRCh37)
Canonical SPDI:: NC_000003.12:122417372:A:G
Gene:: WDR5B (Varview), WDR5B-DT (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.122417373A>G, NC_000003.11:g.122136220A>G

Select item 148486550613.

rs1484865506 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:122416077 (GRCh38)
3:122134924 (GRCh37)
Canonical SPDI:: NC_000003.12:122416076:C:T
Gene:: WDR5B (Varview), WDR5B-DT (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.00009/1 (ALFA)
HGVS:: NC_000003.12:g.122416077C>T, NC_000003.11:g.122134924C>T

Select item 148446160414.

rs1484461604 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 3:122415356 (GRCh38)
3:122134203 (GRCh37)
Canonical SPDI:: NC_000003.12:122415355:C:A
Gene:: WDR5B (Varview), WDR5B-DT (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: A=0.000012/3 (GnomAD_exomes)
HGVS:: NC_000003.12:g.122415356C>A, NC_000003.11:g.122134203C>A, NM_019069.4:c.173G>T, NM_019069.3:c.173G>T, NP_061942.2:p.Ser58Ile

Select item 148432722815.

rs1484327228 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:122414639 (GRCh38)
3:122133486 (GRCh37)
Canonical SPDI:: NC_000003.12:122414638:G:A
Gene:: WDR5B (Varview), WDR5B-DT (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.122414639G>A, NC_000003.11:g.122133486G>A, NM_019069.4:c.890C>T, NM_019069.3:c.890C>T, NP_061942.2:p.Thr297Ile

Select item 148423104916.

rs1484231049 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 3:122412597 (GRCh38)
3:122131444 (GRCh37)
Canonical SPDI:: NC_000003.12:122412596:T:A
Gene:: FAM162A (Varview), WDR5B (Varview)
Functional Consequence:: 3_prime_UTR_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.122412597T>A, NC_000003.11:g.122131444T>A, NM_019069.4:c.*1939A>T, NM_019069.3:c.*1939A>T

Select item 148362106117.

rs1483621061 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:122415945 (GRCh38)
3:122134792 (GRCh37)
Canonical SPDI:: NC_000003.12:122415944:T:C
Gene:: WDR5B (Varview), WDR5B-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000023/6 (TOPMED)
HGVS:: NC_000003.12:g.122415945T>C, NC_000003.11:g.122134792T>C, NM_019069.4:c.-417A>G, NM_019069.3:c.-417A>G

Select item 148349622218.

rs1483496222 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:122412994 (GRCh38)
3:122131841 (GRCh37)
Canonical SPDI:: NC_000003.12:122412993:C:T
Gene:: WDR5B (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000003.12:g.122412994C>T, NC_000003.11:g.122131841C>T, NM_019069.4:c.*1542G>A, NM_019069.3:c.*1542G>A

Select item 148258448519.

rs1482584485 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:122411575 (GRCh38)
3:122130422 (GRCh37)
Canonical SPDI:: NC_000003.12:122411574:G:T
Gene:: FAM162A (Varview), WDR5B (Varview)
Functional Consequence:: downstream_transcript_variant,3_prime_UTR_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.03662/107 (KOREAN)
HGVS:: NC_000003.12:g.122411575G>T, NC_000003.11:g.122130422G>T, NM_014367.4:c.*1744G>T

Select item 148230196920.

rs1482301969 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:122411474 (GRCh38)
3:122130321 (GRCh37)
Canonical SPDI:: NC_000003.12:122411473:A:G
Gene:: FAM162A (Varview), WDR5B (Varview)
Functional Consequence:: downstream_transcript_variant,3_prime_UTR_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.122411474A>G, NC_000003.11:g.122130321A>G, NM_014367.4:c.*1643A>G

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