SNP Links for Gene (Select 55274) - SNP

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Select item 14915052691.

rs1491505269 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 6:169714637 (GRCh38)
6:170114733 (GRCh37)
Canonical SPDI:: NC_000006.12:169714634:ATAT:AT
Gene:: PHF10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATAT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.169714635AT[1], NC_000006.11:g.170114731AT[1]

Select item 14914055952.

rs1491405595 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TTAT [Show Flanks]
Chromosome:: 6:169709843 (GRCh38)
6:170109940 (GRCh37)
Canonical SPDI:: NC_000006.12:169709843:TTTAT:TTTATTTAT
Gene:: PHF10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTATTTAT=0./0 (ALFA)
TTTA=0.000004/1 (TOPMED)
TTTA=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.169709845_169709848dup, NC_000006.11:g.170109941_170109944dup

Select item 14911487493.

rs1491148749 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 6:169709843 (GRCh38)
6:170109939 (GRCh37)
Canonical SPDI:: NC_000006.12:169709842:CT:
Gene:: PHF10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.169709843_169709844del, NC_000006.11:g.170109939_170109940del

Select item 14909689954.

rs1490968995 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:169722834 (GRCh38)
6:170122930 (GRCh37)
Canonical SPDI:: NC_000006.12:169722833:G:A
Gene:: PHF10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.169722834G>A, NC_000006.11:g.170122930G>A

Select item 14909531375.

rs1490953137 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:169721543 (GRCh38)
6:170121639 (GRCh37)
Canonical SPDI:: NC_000006.12:169721542:G:A
Gene:: PHF10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00003/8 (TOPMED)
A=0.000035/1 (TOMMO)
A=0.000036/5 (GnomAD)
HGVS:: NC_000006.12:g.169721543G>A, NC_000006.11:g.170121639G>A

Select item 14904616946.

rs1490461694 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:169722441 (GRCh38)
6:170122537 (GRCh37)
Canonical SPDI:: NC_000006.12:169722440:A:G
Gene:: PHF10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.169722441A>G, NC_000006.11:g.170122537A>G

Select item 14903617977.

rs1490361797 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 6:169715242 (GRCh38)
6:170115338 (GRCh37)
Canonical SPDI:: NC_000006.12:169715241:A:G,NC_000006.12:169715241:A:T
Gene:: PHF10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000006.12:g.169715242A>G, NC_000006.12:g.169715242A>T, NC_000006.11:g.170115338A>G, NC_000006.11:g.170115338A>T

Select item 14902152488.

rs1490215248 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 6:169714672 (GRCh38)
6:170114768 (GRCh37)
Canonical SPDI:: NC_000006.12:169714671:A:C
Gene:: PHF10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.169714672A>C, NC_000006.11:g.170114768A>C

Select item 14901528389.

rs1490152838 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:169722455 (GRCh38)
6:170122551 (GRCh37)
Canonical SPDI:: NC_000006.12:169722454:A:G
Gene:: PHF10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.169722455A>G, NC_000006.11:g.170122551A>G

Select item 149005852710.

rs1490058527 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:169706486 (GRCh38)
6:170106582 (GRCh37)
Canonical SPDI:: NC_000006.12:169706485:C:T
Gene:: PHF10 (Varview), C6orf120 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
T=0.000035/1 (TOMMO)
HGVS:: NC_000006.12:g.169706486C>T, NC_000006.11:g.170106582C>T, NG_046155.1:g.578G>A

Select item 148993366311.

rs1489933663 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:169720290 (GRCh38)
6:170120386 (GRCh37)
Canonical SPDI:: NC_000006.12:169720289:A:G
Gene:: PHF10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.169720290A>G, NC_000006.11:g.170120386A>G

Select item 148987971212.

rs1489879712 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G,T [Show Flanks]
Chromosome:: 6:169704872 (GRCh38)
6:170104968 (GRCh37)
Canonical SPDI:: NC_000006.12:169704871:A:C,NC_000006.12:169704871:A:G,NC_000006.12:169704871:A:T
Gene:: PHF10 (Varview), C6orf120 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.00034/1 (KOREAN)
HGVS:: NC_000006.12:g.169704872A>C, NC_000006.12:g.169704872A>G, NC_000006.12:g.169704872A>T, NC_000006.11:g.170104968A>C, NC_000006.11:g.170104968A>G, NC_000006.11:g.170104968A>T, NG_046155.1:g.2192T>G, NG_046155.1:g.2192T>C, NG_046155.1:g.2192T>A, NM_001029863.3:c.*1837A>C, NM_001029863.3:c.*1837A>G, NM_001029863.3:c.*1837A>T, NM_001029863.2:c.*1837A>C, NM_001029863.2:c.*1837A>G, NM_001029863.2:c.*1837A>T, NM_001029863.1:c.*1837A>C, NM_001029863.1:c.*1837A>G, NM_001029863.1:c.*1837A>T, NM_001317342.2:c.*1837A>C, NM_001317342.2:c.*1837A>G, NM_001317342.2:c.*1837A>T, NM_001317342.1:c.*1837A>C, NM_001317342.1:c.*1837A>G, NM_001317342.1:c.*1837A>T

Select item 148967910413.

rs1489679104 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:169708221 (GRCh38)
6:170108317 (GRCh37)
Canonical SPDI:: NC_000006.12:169708220:A:G
Gene:: PHF10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
HGVS:: NC_000006.12:g.169708221A>G, NC_000006.11:g.170108317A>G

Select item 148960932414.

rs1489609324 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:169721262 (GRCh38)
6:170121358 (GRCh37)
Canonical SPDI:: NC_000006.12:169721261:A:G
Gene:: PHF10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000006.12:g.169721262A>G, NC_000006.11:g.170121358A>G

Select item 148959761415.

rs1489597614 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:169705097 (GRCh38)
6:170105193 (GRCh37)
Canonical SPDI:: NC_000006.12:169705096:C:T
Gene:: PHF10 (Varview), C6orf120 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
T=0.00001/2 (GnomAD_exomes)
HGVS:: NC_000006.12:g.169705097C>T, NC_000006.11:g.170105193C>T, NG_046155.1:g.1967G>A, NM_001029863.3:c.*2062C>T, NM_001029863.2:c.*2062C>T, NM_001029863.1:c.*2062C>T, NM_001317342.2:c.*2062C>T, NM_001317342.1:c.*2062C>T

Select item 148915921616.

rs1489159216 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:169723620 (GRCh38)
6:170123716 (GRCh37)
Canonical SPDI:: NC_000006.12:169723619:G:A
Gene:: PHF10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000006.12:g.169723620G>A, NC_000006.11:g.170123716G>A

Select item 148905683917.

rs1489056839 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 6:169713274 (GRCh38)
6:170113370 (GRCh37)
Canonical SPDI:: NC_000006.12:169713271:TTTT:TT
Gene:: PHF10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0./0 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000021/3 (GnomAD)
-=0.000035/1 (TOMMO)
HGVS:: NC_000006.12:g.169713274_169713275del, NC_000006.11:g.170113370_170113371del

Select item 148895758218.

rs1488957582 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:169725146 (GRCh38)
6:170125242 (GRCh37)
Canonical SPDI:: NC_000006.12:169725145:G:A
Gene:: DYNLT2 (Varview), PHF10 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000006.12:g.169725146G>A, NC_000006.11:g.170125242G>A, NT_187552.1:g.348G>A, XM_011536093.4:c.*434C>T, XM_011536093.1:c.*434C>T, XM_006715554.4:c.*434C>T, XM_006715554.2:c.*434C>T

Select item 148884110019.

rs1488841100 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTATT>- [Show Flanks]
Chromosome:: 6:169717724 (GRCh38)
6:170117820 (GRCh37)
Canonical SPDI:: NC_000006.12:169717717:TTTATTTTATT:TTTATT
Gene:: PHF10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTATT=0.000071/1 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000036/5 (GnomAD)
-=0.003333/2 (NorthernSweden)
HGVS:: NC_000006.12:g.169717719TTATT[1], NC_000006.11:g.170117815TTATT[1]

Select item 148880659920.

rs1488806599 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 6:169724118 (GRCh38)
6:170124214 (GRCh37)
Canonical SPDI:: NC_000006.12:169724117:C:G,NC_000006.12:169724117:C:T
Gene:: PHF10 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.169724118C>G, NC_000006.12:g.169724118C>T, NC_000006.11:g.170124214C>G, NC_000006.11:g.170124214C>T, NM_018288.4:c.-187G>C, NM_018288.4:c.-187G>A, NM_133325.3:c.-187G>C, NM_133325.3:c.-187G>A

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