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1.

rs1491568014 has merged into rs10659783 [Homo sapiens]
    Variant type:
    DELINS
    Alleles:
    CA>-,CACA [Show Flanks]
    Chromosome:
    11:27456323 (GRCh38)
    11:27477870 (GRCh37)
    Canonical SPDI:
    NC_000011.10:27456317:ACACACA:ACACA,NC_000011.10:27456317:ACACACA:ACACACACA
    Gene:
    LGR4 (Varview)
    Functional Consequence:
    intron_variant
    Validated:
    by frequency,by alfa,by cluster
    MAF:
    ACACACA=0.258153/4781 (ALFA)
    -=0.2/8 (GENOME_DK)
    -=0.221429/992 (Estonian)
    -=0.242485/242 (GoNL)
    -=0.274964/38451 (GnomAD)
    -=0.295145/78122 (TOPMED)
    -=0.303873/1522 (1000Genomes)
    -=0.313333/188 (NorthernSweden)
    -=0.458631/7686 (TOMMO)
    HGVS:
    2.

    rs1491546105 [Homo sapiens]
      Variant type:
      DEL
      Alleles:
      TC>- [Show Flanks]
      Chromosome:
      11:27391251 (GRCh38)
      11:27412798 (GRCh37)
      Canonical SPDI:
      NC_000011.10:27391250:TC:
      Gene:
      LGR4 (Varview)
      Functional Consequence:
      intron_variant
      Validated:
      by frequency,by alfa,by cluster
      MAF:
      -=0.00093/11 (ALFA)
      HGVS:
      3.

      rs1491537686 [Homo sapiens]
        Variant type:
        DEL
        Alleles:
        GC>- [Show Flanks]
        Chromosome:
        11:27385810 (GRCh38)
        11:27407357 (GRCh37)
        Canonical SPDI:
        NC_000011.10:27385809:GC:
        Gene:
        LGR4 (Varview)
        Functional Consequence:
        intron_variant
        Validated:
        by frequency,by alfa
        MAF:
        -=0.0002/1 (ALFA)
        -=0.0002/1 (Estonian)
        HGVS:
        4.

        rs1491482484 [Homo sapiens]
          Variant type:
          DELINS
          Alleles:
          ->CTGT [Show Flanks]
          Chromosome:
          11:27437661 (GRCh38)
          11:27459209 (GRCh37)
          Canonical SPDI:
          NC_000011.10:27437661:TGT:TGTCTGT
          Gene:
          LGR4 (Varview)
          Functional Consequence:
          intron_variant
          Validated:
          by frequency,by alfa
          MAF:
          TGTCTGT=0./0 (ALFA)
          HGVS:
          5.

          rs1491457323 [Homo sapiens]
            Variant type:
            DELINS
            Alleles:
            GA>- [Show Flanks]
            Chromosome:
            11:27449640 (GRCh38)
            11:27471187 (GRCh37)
            Canonical SPDI:
            NC_000011.10:27449638:AGA:A
            Gene:
            LGR4 (Varview)
            Functional Consequence:
            intron_variant
            Validated:
            by frequency,by alfa,by cluster
            MAF:
            A=0./0 (ALFA)
            -=0.000004/1 (TOPMED)
            -=0.000007/1 (GnomAD)
            HGVS:
            6.

            rs1491440314 has merged into rs1336757147 [Homo sapiens]
              Variant type:
              DELINS
              Alleles:
              GGGGG>-,G,GG,GGG,GGGG,GGGGGG,GGGGGGG,GGGGGGGG,GGGGGGGGG,GGGGGGGGGGGGGG [Show Flanks]
              Chromosome:
              11:27393950 (GRCh38)
              11:27415497 (GRCh37)
              Canonical SPDI:
              NC_000011.10:27393939:GGGGGGGGGGGGGGG:GGGGGGGGGG,NC_000011.10:27393939:GGGGGGGGGGGGGGG:GGGGGGGGGGG,NC_000011.10:27393939:GGGGGGGGGGGGGGG:GGGGGGGGGGGG,NC_000011.10:27393939:GGGGGGGGGGGGGGG:GGGGGGGGGGGGG,NC_000011.10:27393939:GGGGGGGGGGGGGGG:GGGGGGGGGGGGGG,NC_000011.10:27393939:GGGGGGGGGGGGGGG:GGGGGGGGGGGGGGGG,NC_000011.10:27393939:GGGGGGGGGGGGGGG:GGGGGGGGGGGGGGGGG,NC_000011.10:27393939:GGGGGGGGGGGGGGG:GGGGGGGGGGGGGGGGGG,NC_000011.10:27393939:GGGGGGGGGGGGGGG:GGGGGGGGGGGGGGGGGGG,NC_000011.10:27393939:GGGGGGGGGGGGGGG:GGGGGGGGGGGGGGGGGGGGGGGG
              Gene:
              LGR4 (Varview)
              Functional Consequence:
              intron_variant
              Validated:
              by frequency,by alfa,by cluster
              MAF:
              GGGGGGGGGGG=0./0 (ALFA)
              HGVS:
              NC_000011.10:g.27393950_27393954del, NC_000011.10:g.27393951_27393954del, NC_000011.10:g.27393952_27393954del, NC_000011.10:g.27393953_27393954del, NC_000011.10:g.27393954del, NC_000011.10:g.27393954dup, NC_000011.10:g.27393953_27393954dup, NC_000011.10:g.27393952_27393954dup, NC_000011.10:g.27393951_27393954dup, NC_000011.10:g.27393946_27393954dup, NC_000011.9:g.27415497_27415501del, NC_000011.9:g.27415498_27415501del, NC_000011.9:g.27415499_27415501del, NC_000011.9:g.27415500_27415501del, NC_000011.9:g.27415501del, NC_000011.9:g.27415501dup, NC_000011.9:g.27415500_27415501dup, NC_000011.9:g.27415499_27415501dup, NC_000011.9:g.27415498_27415501dup, NC_000011.9:g.27415493_27415501dup, NG_051818.1:g.83832_83836del, NG_051818.1:g.83833_83836del, NG_051818.1:g.83834_83836del, NG_051818.1:g.83835_83836del, NG_051818.1:g.83836del, NG_051818.1:g.83836dup, NG_051818.1:g.83835_83836dup, NG_051818.1:g.83834_83836dup, NG_051818.1:g.83833_83836dup, NG_051818.1:g.83828_83836dup
              7.

              rs1491439832 has merged into rs35556457 [Homo sapiens]
                Variant type:
                DELINS
                Alleles:
                TTTT>-,T,TT,TTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT [Show Flanks]
                Chromosome:
                11:27391248 (GRCh38)
                11:27412795 (GRCh37)
                Canonical SPDI:
                NC_000011.10:27391235:TTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000011.10:27391235:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000011.10:27391235:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000011.10:27391235:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000011.10:27391235:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000011.10:27391235:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000011.10:27391235:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000011.10:27391235:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000011.10:27391235:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000011.10:27391235:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:27391235:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT
                Gene:
                LGR4 (Varview)
                Functional Consequence:
                intron_variant
                Validated:
                by frequency,by alfa,by cluster
                MAF:
                TTTTTTTTTTTTTTT=0./0 (ALFA)
                TT=0.0216/108 (1000Genomes)
                HGVS:
                NC_000011.10:g.27391248_27391251del, NC_000011.10:g.27391249_27391251del, NC_000011.10:g.27391250_27391251del, NC_000011.10:g.27391251del, NC_000011.10:g.27391251dup, NC_000011.10:g.27391250_27391251dup, NC_000011.10:g.27391249_27391251dup, NC_000011.10:g.27391248_27391251dup, NC_000011.10:g.27391247_27391251dup, NC_000011.10:g.27391246_27391251dup, NC_000011.10:g.27391245_27391251dup, NC_000011.9:g.27412795_27412798del, NC_000011.9:g.27412796_27412798del, NC_000011.9:g.27412797_27412798del, NC_000011.9:g.27412798del, NC_000011.9:g.27412798dup, NC_000011.9:g.27412797_27412798dup, NC_000011.9:g.27412796_27412798dup, NC_000011.9:g.27412795_27412798dup, NC_000011.9:g.27412794_27412798dup, NC_000011.9:g.27412793_27412798dup, NC_000011.9:g.27412792_27412798dup, NG_051818.1:g.86537_86540del, NG_051818.1:g.86538_86540del, NG_051818.1:g.86539_86540del, NG_051818.1:g.86540del, NG_051818.1:g.86540dup, NG_051818.1:g.86539_86540dup, NG_051818.1:g.86538_86540dup, NG_051818.1:g.86537_86540dup, NG_051818.1:g.86536_86540dup, NG_051818.1:g.86535_86540dup, NG_051818.1:g.86534_86540dup
                8.

                rs1491427156 [Homo sapiens]
                  Variant type:
                  INS
                  Alleles:
                  ->C,T [Show Flanks]
                  Chromosome:
                  11:27393940 (GRCh38)
                  11:27415488 (GRCh37)
                  Canonical SPDI:
                  NC_000011.10:27393940::C,NC_000011.10:27393940::T
                  Gene:
                  LGR4 (Varview)
                  Functional Consequence:
                  intron_variant
                  Validated:
                  by frequency,by alfa
                  MAF:
                  T=0./0 (ALFA)
                  HGVS:
                  9.

                  rs1491405807 [Homo sapiens]
                    Variant type:
                    INS
                    Alleles:
                    ->TTC,TTTC,TTTTC,TTTTTA [Show Flanks]
                    Chromosome:
                    11:27391251 (GRCh38)
                    11:27412799 (GRCh37)
                    Canonical SPDI:
                    NC_000011.10:27391251::TTC,NC_000011.10:27391251::TTTC,NC_000011.10:27391251::TTTTC,NC_000011.10:27391251::TTTTTA
                    Gene:
                    LGR4 (Varview)
                    Functional Consequence:
                    intron_variant
                    Validated:
                    by frequency,by alfa,by cluster
                    MAF:
                    TTTTC=0./0 (ALFA)
                    HGVS:
                    10.

                    rs1491370563 [Homo sapiens]
                      Variant type:
                      DEL
                      Alleles:
                      TG>- [Show Flanks]
                      Chromosome:
                      11:27452645 (GRCh38)
                      11:27474192 (GRCh37)
                      Canonical SPDI:
                      NC_000011.10:27452644:TG:
                      Gene:
                      LGR4 (Varview)
                      Functional Consequence:
                      intron_variant
                      Validated:
                      by frequency,by alfa
                      MAF:
                      -=0./0 (ALFA)
                      -=0.00024/28 (GnomAD)
                      HGVS:
                      11.

                      rs1491292547 [Homo sapiens]
                        Variant type:
                        DEL
                        Alleles:
                        AT>- [Show Flanks]
                        Chromosome:
                        11:27461632 (GRCh38)
                        11:27483179 (GRCh37)
                        Canonical SPDI:
                        NC_000011.10:27461631:AT:
                        Gene:
                        LGR4 (Varview)
                        Functional Consequence:
                        intron_variant
                        Validated:
                        by frequency,by alfa
                        MAF:
                        -=0./0 (ALFA)
                        -=0.000016/2 (GnomAD)
                        HGVS:
                        12.

                        rs1491292474 [Homo sapiens]
                          Variant type:
                          DELINS
                          Alleles:
                          ->TAAG [Show Flanks]
                          Chromosome:
                          11:27436350 (GRCh38)
                          11:27457898 (GRCh37)
                          Canonical SPDI:
                          NC_000011.10:27436350:AAG:AAGTAAG
                          Gene:
                          LGR4 (Varview)
                          Functional Consequence:
                          intron_variant
                          Validated:
                          by frequency,by alfa
                          MAF:
                          AAGTAAG=0./0 (ALFA)
                          AAGT=0.000009/1 (GnomAD)
                          HGVS:
                          13.

                          rs1491235562 has merged into rs59633176 [Homo sapiens]
                            Variant type:
                            DELINS
                            Alleles:
                            AAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA [Show Flanks]
                            Chromosome:
                            11:27454772 (GRCh38)
                            11:27476319 (GRCh37)
                            Canonical SPDI:
                            NC_000011.10:27454761:AAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000011.10:27454761:AAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000011.10:27454761:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000011.10:27454761:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000011.10:27454761:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000011.10:27454761:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000011.10:27454761:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000011.10:27454761:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000011.10:27454761:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000011.10:27454761:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:27454761:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
                            Gene:
                            LGR4 (Varview)
                            Functional Consequence:
                            intron_variant
                            Validated:
                            by frequency,by alfa,by cluster
                            MAF:
                            AAAAAAAAAAAA=0./0 (ALFA)
                            -=0.1893/103 (NorthernSweden)
                            A=0.475/19 (GENOME_DK)
                            HGVS:
                            NC_000011.10:g.27454772_27454777del, NC_000011.10:g.27454773_27454777del, NC_000011.10:g.27454774_27454777del, NC_000011.10:g.27454775_27454777del, NC_000011.10:g.27454776_27454777del, NC_000011.10:g.27454777del, NC_000011.10:g.27454777dup, NC_000011.10:g.27454776_27454777dup, NC_000011.10:g.27454775_27454777dup, NC_000011.10:g.27454771_27454777dup, NC_000011.10:g.27454765_27454777dup, NC_000011.9:g.27476319_27476324del, NC_000011.9:g.27476320_27476324del, NC_000011.9:g.27476321_27476324del, NC_000011.9:g.27476322_27476324del, NC_000011.9:g.27476323_27476324del, NC_000011.9:g.27476324del, NC_000011.9:g.27476324dup, NC_000011.9:g.27476323_27476324dup, NC_000011.9:g.27476322_27476324dup, NC_000011.9:g.27476318_27476324dup, NC_000011.9:g.27476312_27476324dup, NG_051818.1:g.23009_23014del, NG_051818.1:g.23010_23014del, NG_051818.1:g.23011_23014del, NG_051818.1:g.23012_23014del, NG_051818.1:g.23013_23014del, NG_051818.1:g.23014del, NG_051818.1:g.23014dup, NG_051818.1:g.23013_23014dup, NG_051818.1:g.23012_23014dup, NG_051818.1:g.23008_23014dup, NG_051818.1:g.23002_23014dup
                            14.

                            rs1491230594 [Homo sapiens]
                              Variant type:
                              DELINS
                              Alleles:
                              ->CGG [Show Flanks]
                              Chromosome:
                              11:27393939 (GRCh38)
                              11:27415487 (GRCh37)
                              Canonical SPDI:
                              NC_000011.10:27393939:GG:GGCGG
                              Gene:
                              LGR4 (Varview)
                              Functional Consequence:
                              intron_variant
                              Validated:
                              by frequency,by alfa
                              MAF:
                              GGCGG=0./0 (ALFA)
                              GGC=0.0001/1 (GnomAD)
                              HGVS:
                              15.

                              rs1491189469 [Homo sapiens]
                                Variant type:
                                SNV:
                                Alleles:
                                ->TTA
                                Chromosome:
                                no mapping
                                Canonical SPDI:
                                16.

                                rs1491148093 [Homo sapiens]
                                  Variant type:
                                  INS
                                  Alleles:
                                  ->AA [Show Flanks]
                                  Chromosome:
                                  11:27385810 (GRCh38)
                                  11:27407358 (GRCh37)
                                  Canonical SPDI:
                                  NC_000011.10:27385810::AA
                                  Gene:
                                  LGR4 (Varview)
                                  Functional Consequence:
                                  intron_variant
                                  Validated:
                                  by frequency
                                  MAF:
                                  AA=0.0007/3 (Estonian)
                                  HGVS:
                                  17.

                                  rs1491146955 [Homo sapiens]
                                    Variant type:
                                    DEL
                                    Alleles:
                                    TG>- [Show Flanks]
                                    Chromosome:
                                    11:27393939 (GRCh38)
                                    11:27415486 (GRCh37)
                                    Canonical SPDI:
                                    NC_000011.10:27393938:TG:
                                    Gene:
                                    LGR4 (Varview)
                                    Functional Consequence:
                                    intron_variant
                                    Validated:
                                    by frequency,by alfa,by cluster
                                    MAF:
                                    -=0.00368/42 (ALFA)
                                    -=0.00004/1 (TOMMO)
                                    -=0.22484/898 (GnomAD)
                                    HGVS:
                                    18.

                                    rs1491112260 [Homo sapiens]
                                      Variant type:
                                      DEL
                                      Alleles:
                                      CT>- [Show Flanks]
                                      Chromosome:
                                      11:27391235 (GRCh38)
                                      11:27412782 (GRCh37)
                                      Canonical SPDI:
                                      NC_000011.10:27391234:CT:
                                      Gene:
                                      LGR4 (Varview)
                                      Functional Consequence:
                                      intron_variant
                                      Validated:
                                      by frequency,by alfa,by cluster
                                      MAF:
                                      -=0.00008/1 (ALFA)
                                      -=0.00016/3 (GnomAD)
                                      HGVS:
                                      19.

                                      rs1491038956 has merged into rs3085345 [Homo sapiens]
                                        Variant type:
                                        DELINS
                                        Alleles:
                                        AA>-,A,AAA,AAAA [Show Flanks]
                                        Chromosome:
                                        11:27381716 (GRCh38)
                                        11:27403263 (GRCh37)
                                        Canonical SPDI:
                                        NC_000011.10:27381706:AAAAAAAAAAA:AAAAAAAAA,NC_000011.10:27381706:AAAAAAAAAAA:AAAAAAAAAA,NC_000011.10:27381706:AAAAAAAAAAA:AAAAAAAAAAAA,NC_000011.10:27381706:AAAAAAAAAAA:AAAAAAAAAAAAA
                                        Gene:
                                        LGR4 (Varview)
                                        Functional Consequence:
                                        intron_variant
                                        Validated:
                                        by frequency,by alfa,by cluster
                                        MAF:
                                        AAAAAAAAAAAAA=0.0004/2 (ALFA)
                                        A=0.0769/385 (1000Genomes)
                                        HGVS:
                                        20.

                                        rs1491030857 has merged into rs55877673 [Homo sapiens]
                                          Variant type:
                                          DELINS
                                          Alleles:
                                          TTTTTTTTTT>-,TTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT [Show Flanks]
                                          Chromosome:
                                          11:27418841 (GRCh38)
                                          11:27440388 (GRCh37)
                                          Canonical SPDI:
                                          NC_000011.10:27418832:TTTTTTTTTTTTTTTTTT:TTTTTTTT,NC_000011.10:27418832:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000011.10:27418832:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000011.10:27418832:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000011.10:27418832:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000011.10:27418832:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000011.10:27418832:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000011.10:27418832:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000011.10:27418832:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000011.10:27418832:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000011.10:27418832:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT
                                          Gene:
                                          LGR4 (Varview)
                                          Functional Consequence:
                                          intron_variant
                                          Validated:
                                          by frequency,by alfa,by cluster
                                          MAF:
                                          TTTTTTTTTTTTT=0./0 (ALFA)
                                          -=0.33606/1683 (1000Genomes)
                                          HGVS:
                                          NC_000011.10:g.27418841_27418850del, NC_000011.10:g.27418844_27418850del, NC_000011.10:g.27418846_27418850del, NC_000011.10:g.27418847_27418850del, NC_000011.10:g.27418848_27418850del, NC_000011.10:g.27418849_27418850del, NC_000011.10:g.27418850del, NC_000011.10:g.27418850dup, NC_000011.10:g.27418849_27418850dup, NC_000011.10:g.27418848_27418850dup, NC_000011.10:g.27418847_27418850dup, NC_000011.9:g.27440388_27440397del, NC_000011.9:g.27440391_27440397del, NC_000011.9:g.27440393_27440397del, NC_000011.9:g.27440394_27440397del, NC_000011.9:g.27440395_27440397del, NC_000011.9:g.27440396_27440397del, NC_000011.9:g.27440397del, NC_000011.9:g.27440397dup, NC_000011.9:g.27440396_27440397dup, NC_000011.9:g.27440395_27440397dup, NC_000011.9:g.27440394_27440397dup, NG_051818.1:g.58934_58943del, NG_051818.1:g.58937_58943del, NG_051818.1:g.58939_58943del, NG_051818.1:g.58940_58943del, NG_051818.1:g.58941_58943del, NG_051818.1:g.58942_58943del, NG_051818.1:g.58943del, NG_051818.1:g.58943dup, NG_051818.1:g.58942_58943dup, NG_051818.1:g.58941_58943dup, NG_051818.1:g.58940_58943dup

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