SNP Links for Gene (Select 56891) - SNP

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Select item 14908202391.

rs1490820239 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:39703680 (GRCh38)
19:40194320 (GRCh37)
Canonical SPDI:: NC_000019.10:39703679:G:T
Gene:: LGALS14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000036/5 (GnomAD)
HGVS:: NC_000019.10:g.39703680G>T, NC_000019.9:g.40194320G>T

Select item 14908068512.

rs1490806851 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 19:39707412 (GRCh38)
19:40198052 (GRCh37)
Canonical SPDI:: NC_000019.10:39707411:C:A,NC_000019.10:39707411:C:T
Gene:: LGALS14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00004/1 (ALFA)
HGVS:: NC_000019.10:g.39707412C>A, NC_000019.10:g.39707412C>T, NC_000019.9:g.40198052C>A, NC_000019.9:g.40198052C>T

Select item 14906160853.

rs1490616085 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 19:39706666 (GRCh38)
19:40197306 (GRCh37)
Canonical SPDI:: NC_000019.10:39706665:A:T
Gene:: LGALS14 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.39706666A>T, NC_000019.9:g.40197306A>T, NM_020129.3:c.85A>T, NM_020129.2:c.85A>T, NM_203471.2:c.172A>T, NM_203471.1:c.172A>T, NP_064514.1:p.Thr29Ser, NP_982297.1:p.Thr58Ser

Select item 14902028624.

rs1490202862 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:39708583 (GRCh38)
19:40199223 (GRCh37)
Canonical SPDI:: NC_000019.10:39708582:C:T
Gene:: LGALS14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.39708583C>T, NC_000019.9:g.40199223C>T

Select item 14898030825.

rs1489803082 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:39707350 (GRCh38)
19:40197990 (GRCh37)
Canonical SPDI:: NC_000019.10:39707349:T:C
Gene:: LGALS14 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000019.10:g.39707350T>C, NC_000019.9:g.40197990T>C, NM_020129.3:c.265T>C, NM_020129.2:c.265T>C, NM_203471.2:c.352T>C, NM_203471.1:c.352T>C, NP_064514.1:p.Phe89Leu, NP_982297.1:p.Phe118Leu

Select item 14895738986.

rs1489573898 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:39708506 (GRCh38)
19:40199146 (GRCh37)
Canonical SPDI:: NC_000019.10:39708505:A:G
Gene:: LGALS14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.39708506A>G, NC_000019.9:g.40199146A>G

Select item 14882478667.

rs1488247866 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 19:39702713 (GRCh38)
19:40193354 (GRCh37)
Canonical SPDI:: NC_000019.10:39702713:TT:TTT
Gene:: LGALS14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TTT=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.39702715dup, NC_000019.9:g.40193355dup

Select item 14875327948.

rs1487532794 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:39706721 (GRCh38)
19:40197361 (GRCh37)
Canonical SPDI:: NC_000019.10:39706720:A:G
Gene:: LGALS14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.39706721A>G, NC_000019.9:g.40197361A>G

Select item 14870038429.

rs1487003842 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:39706873 (GRCh38)
19:40197513 (GRCh37)
Canonical SPDI:: NC_000019.10:39706872:G:A
Gene:: LGALS14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.39706873G>A, NC_000019.9:g.40197513G>A

Select item 148661703710.

rs1486617037 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:39703347 (GRCh38)
19:40193987 (GRCh37)
Canonical SPDI:: NC_000019.10:39703346:C:A
Gene:: LGALS14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.39703347C>A, NC_000019.9:g.40193987C>A

Select item 148527295011.

rs1485272950 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 19:39708243 (GRCh38)
19:40198883 (GRCh37)
Canonical SPDI:: NC_000019.10:39708238:ATATAT:ATAT
Gene:: LGALS14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATAT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.39708239AT[2], NC_000019.9:g.40198879AT[2]

Select item 148516540912.

rs1485165409 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:39704802 (GRCh38)
19:40195442 (GRCh37)
Canonical SPDI:: NC_000019.10:39704801:C:T
Gene:: LGALS14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.39704802C>T, NC_000019.9:g.40195442C>T

Select item 148447008313.

rs1484470083 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:39705320 (GRCh38)
19:40195960 (GRCh37)
Canonical SPDI:: NC_000019.10:39705319:C:T
Gene:: LGALS14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.39705320C>T, NC_000019.9:g.40195960C>T

Select item 148392853614.

rs1483928536 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:39708113 (GRCh38)
19:40198753 (GRCh37)
Canonical SPDI:: NC_000019.10:39708112:C:G
Gene:: LGALS14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.39708113C>G, NC_000019.9:g.40198753C>G

Select item 148374058915.

rs1483740589 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:39709085 (GRCh38)
19:40199725 (GRCh37)
Canonical SPDI:: NC_000019.10:39709084:T:C
Gene:: LGALS14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000142/2 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000026/7 (TOPMED)
HGVS:: NC_000019.10:g.39709085T>C, NC_000019.9:g.40199725T>C

Select item 148368512516.

rs1483685125 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:39704941 (GRCh38)
19:40195581 (GRCh37)
Canonical SPDI:: NC_000019.10:39704940:C:G
Gene:: LGALS14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.39704941C>G, NC_000019.9:g.40195581C>G

Select item 148337251317.

rs1483372513 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 19:39702523 (GRCh38)
19:40193164 (GRCh37)
Canonical SPDI:: NC_000019.10:39702523:T:TT
Gene:: LGALS14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.39702524dup, NC_000019.9:g.40193164dup

Select item 148323351418.

rs1483233514 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:39703459 (GRCh38)
19:40194099 (GRCh37)
Canonical SPDI:: NC_000019.10:39703458:A:G
Gene:: LGALS14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.39703459A>G, NC_000019.9:g.40194099A>G

Select item 148145231419.

rs1481452314 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:39707103 (GRCh38)
19:40197743 (GRCh37)
Canonical SPDI:: NC_000019.10:39707102:G:A
Gene:: LGALS14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.39707103G>A, NC_000019.9:g.40197743G>A

Select item 148138680420.

rs1481386804 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:39703494 (GRCh38)
19:40194134 (GRCh37)
Canonical SPDI:: NC_000019.10:39703493:G:T
Gene:: LGALS14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.39703494G>T, NC_000019.9:g.40194134G>T

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