SNP Links for Gene (Select 57121) - SNP

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Items: 1 to 20 of 5127

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Select item 14909932271.

rs1490993227 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:6629917 (GRCh38)
12:6739083 (GRCh37)
Canonical SPDI:: NC_000012.12:6629916:G:A
Gene:: LPAR5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000012.12:g.6629917G>A, NC_000012.11:g.6739083G>A

Select item 14909606022.

rs1490960602 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 12:6622369 (GRCh38)
12:6731535 (GRCh37)
Canonical SPDI:: NC_000012.12:6622368:A:C,NC_000012.12:6622368:A:T
Gene:: LPAR5 (Varview), LOC105369631 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000023/6 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000012.12:g.6622369A>C, NC_000012.12:g.6622369A>T, NC_000012.11:g.6731535A>C, NC_000012.11:g.6731535A>T

Select item 14909261313.

rs1490926131 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:6628340 (GRCh38)
12:6737506 (GRCh37)
Canonical SPDI:: NC_000012.12:6628339:A:G
Gene:: LPAR5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.6628340A>G, NC_000012.11:g.6737506A>G

Select item 14908932474.

rs1490893247 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 12:6621499 (GRCh38)
12:6730665 (GRCh37)
Canonical SPDI:: NC_000012.12:6621498:G:C
Gene:: LPAR5 (Varview), LOC105369631 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.6621499G>C, NC_000012.11:g.6730665G>C

Select item 14906447295.

rs1490644729 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 12:6627860 (GRCh38)
12:6737026 (GRCh37)
Canonical SPDI:: NC_000012.12:6627859:C:G
Gene:: LPAR5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.6627860C>G, NC_000012.11:g.6737026C>G

Select item 14905520126.

rs1490552012 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 12:6634581 (GRCh38)
12:6743747 (GRCh37)
Canonical SPDI:: NC_000012.12:6634579:TCT:T
Gene:: LPAR5 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.6634581_6634582del, NC_000012.11:g.6743747_6743748del

Select item 14905033577.

rs1490503357 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 12:6629237 (GRCh38)
12:6738403 (GRCh37)
Canonical SPDI:: NC_000012.12:6629236:G:A,NC_000012.12:6629236:G:T
Gene:: LPAR5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000012.12:g.6629237G>A, NC_000012.12:g.6629237G>T, NC_000012.11:g.6738403G>A, NC_000012.11:g.6738403G>T

Select item 14904347728.

rs1490434772 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 12:6627633 (GRCh38)
12:6736799 (GRCh37)
Canonical SPDI:: NC_000012.12:6627632:A:T
Gene:: LPAR5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000132/2 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000012.12:g.6627633A>T, NC_000012.11:g.6736799A>T

Select item 14902605649.

rs1490260564 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 12:6628210 (GRCh38)
12:6737376 (GRCh37)
Canonical SPDI:: NC_000012.12:6628209:C:A
Gene:: LPAR5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.6628210C>A, NC_000012.11:g.6737376C>A

Select item 148997818010.

rs1489978180 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:6621583 (GRCh38)
12:6730749 (GRCh37)
Canonical SPDI:: NC_000012.12:6621582:A:G
Gene:: LPAR5 (Varview), LOC105369631 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.000342/1 (KOREAN)
HGVS:: NC_000012.12:g.6621583A>G, NC_000012.11:g.6730749A>G

Select item 148951649411.

rs1489516494 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:6627161 (GRCh38)
12:6736327 (GRCh37)
Canonical SPDI:: NC_000012.12:6627160:A:G
Gene:: LPAR5 (Varview), LOC105369631 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.6627161A>G, NC_000012.11:g.6736327A>G

Select item 148948148412.

rs1489481484 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:6625159 (GRCh38)
12:6734325 (GRCh37)
Canonical SPDI:: NC_000012.12:6625158:T:C
Gene:: LPAR5 (Varview), LOC105369631 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000084/1 (ALFA)
C=0.000194/27 (GnomAD)
C=0.000212/6 (TOMMO)
HGVS:: NC_000012.12:g.6625159T>C, NC_000012.11:g.6734325T>C

Select item 148941514213.

rs1489415142 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 12:6619728 (GRCh38)
12:6728894 (GRCh37)
Canonical SPDI:: NC_000012.12:6619727:G:T
Gene:: LPAR5 (Varview), LOC105369631 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.6619728G>T, NC_000012.11:g.6728894G>T, NM_020400.6:c.*402C>A, NM_020400.5:c.*402C>A, NM_001142961.1:c.*402C>A

Select item 148932468814.

rs1489324688 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:6619071 (GRCh38)
12:6728237 (GRCh37)
Canonical SPDI:: NC_000012.12:6619070:A:G
Gene:: LPAR5 (Varview), LOC105369631 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.0004/2 (ALFA)
G=0.0004/2 (Estonian)
HGVS:: NC_000012.12:g.6619071A>G, NC_000012.11:g.6728237A>G, NM_020400.6:c.*1059T>C, NM_020400.5:c.*1059T>C, NM_001142961.1:c.*1059T>C

Select item 148914994915.

rs1489149949 [Homo sapiens]

Variant type:: SNV:
Alleles:: T>C
Chromosome:: no mapping
Canonical SPDI:

Select item 148911899016.

rs1489118990 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 12:6632933 (GRCh38)
12:6742099 (GRCh37)
Canonical SPDI:: NC_000012.12:6632932:C:G
Gene:: LPAR5 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.6632933C>G, NC_000012.11:g.6742099C>G

Select item 148900978717.

rs1489009787 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:6625886 (GRCh38)
12:6735052 (GRCh37)
Canonical SPDI:: NC_000012.12:6625885:T:C
Gene:: LPAR5 (Varview), LOC105369631 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000156/1 (1000Genomes)
C=0.000685/2 (KOREAN)
HGVS:: NC_000012.12:g.6625886T>C, NC_000012.11:g.6735052T>C

Select item 148894597518.

rs1488945975 [Homo sapiens]

Variant type:: INS
Alleles:: ->AGGTC [Show Flanks]
Chromosome:: 12:6636527 (GRCh38)
12:6745694 (GRCh37)
Canonical SPDI:: NC_000012.12:6636527::AGGTC
Gene:: LPAR5 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AGGTC=0./0 (ALFA)
AGGTC=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.6636527_6636528insAGGTC, NC_000012.11:g.6745693_6745694insAGGTC

Select item 148888774319.

rs1488887743 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:6623661 (GRCh38)
12:6732827 (GRCh37)
Canonical SPDI:: NC_000012.12:6623660:T:C
Gene:: LPAR5 (Varview), LOC105369631 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000012.12:g.6623661T>C, NC_000012.11:g.6732827T>C

Select item 148819318920.

rs1488193189 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:6631712 (GRCh38)
12:6740878 (GRCh37)
Canonical SPDI:: NC_000012.12:6631711:A:G
Gene:: LPAR5 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.6631712A>G, NC_000012.11:g.6740878A>G

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