SNP Links for Gene (Select 574029) - SNP

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Items: 1 to 20 of 1991

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Select item 14913606781.

rs1491360678 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 1:228648861 (GRCh38)
1:228784609 (GRCh37)
Canonical SPDI:: NC_000001.11:228648861::C
Gene:: RHOU (Varview), DUSP5P1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: C=0.00002/1 (GnomAD)
HGVS:: NC_000001.11:g.228648861_228648862insC, NC_000001.10:g.228784608_228784609insC, NW_018654708.1:g.226188_226189insC, NM_152664.1:c.*286_*287insC, XM_047443122.1:c.*286_*287insC

Select item 14912170842.

rs1491217084 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 1:228648862 (GRCh38)
1:228784609 (GRCh37)
Canonical SPDI:: NC_000001.11:228648860:TTT:T
Gene:: RHOU (Varview), DUSP5P1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: -=0.00002/1 (GnomAD)
HGVS:: NC_000001.11:g.228648862_228648863del, NC_000001.10:g.228784609_228784610del, NW_018654708.1:g.226189_226190del, NM_152664.1:c.*287_*288del, XM_047443122.1:c.*287_*288del

Select item 14909553523.

rs1490955352 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:228646804 (GRCh38)
1:228782551 (GRCh37)
Canonical SPDI:: NC_000001.11:228646803:G:A
Gene:: RHOU (Varview), DUSP5P1 (Varview), RNA5S17 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000043/6 (GnomAD)
HGVS:: NC_000001.11:g.228646804G>A, NC_000001.10:g.228782551G>A, NW_018654708.1:g.224132G>A, XM_047443122.1:c.-1216G>A

Select item 14904180644.

rs1490418064 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:228651657 (GRCh38)
1:228787404 (GRCh37)
Canonical SPDI:: NC_000001.11:228651656:C:A,NC_000001.11:228651656:C:T
Gene:: RHOU (Varview), DUSP5P1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.228651657C>A, NC_000001.11:g.228651657C>T, NC_000001.10:g.228787404C>A, NC_000001.10:g.228787404C>T, NW_018654708.1:g.228984C>A, NW_018654708.1:g.228984C>T, NR_002834.2:n.1717C>A, NR_002834.2:n.1717C>T, NR_002834.1:n.1717C>A, NR_002834.1:n.1717C>T

Select item 14898097805.

rs1489809780 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:228646899 (GRCh38)
1:228782646 (GRCh37)
Canonical SPDI:: NC_000001.11:228646898:C:G,NC_000001.11:228646898:C:T
Gene:: RHOU (Varview), DUSP5P1 (Varview), RNA5S17 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
G=0.000106/2 (TOMMO)
HGVS:: NC_000001.11:g.228646899C>G, NC_000001.11:g.228646899C>T, NC_000001.10:g.228782646C>G, NC_000001.10:g.228782646C>T, NW_018654708.1:g.224227C>G, NW_018654708.1:g.224227C>T, XM_047443122.1:c.-1121C>G, XM_047443122.1:c.-1121C>T

Select item 14888662496.

rs1488866249 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:228647125 (GRCh38)
1:228782872 (GRCh37)
Canonical SPDI:: NC_000001.11:228647124:A:G
Gene:: RHOU (Varview), DUSP5P1 (Varview), RNA5S17 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.228647125A>G, NC_000001.10:g.228782872A>G, NW_018654708.1:g.224452A>G, XM_047443122.1:c.-896A>G

Select item 14886651687.

rs1488665168 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:228652747 (GRCh38)
1:228788494 (GRCh37)
Canonical SPDI:: NC_000001.11:228652746:A:C
Gene:: RHOU (Varview), DUSP5P1 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.228652747A>C, NC_000001.10:g.228788494A>C, NW_018654708.1:g.230074A>C

Select item 14883368628.

rs1488336862 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:228650541 (GRCh38)
1:228786288 (GRCh37)
Canonical SPDI:: NC_000001.11:228650540:G:A,NC_000001.11:228650540:G:C
Gene:: RHOU (Varview), DUSP5P1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000015/2 (GnomAD_exomes)
HGVS:: NC_000001.11:g.228650541G>A, NC_000001.11:g.228650541G>C, NC_000001.10:g.228786288G>A, NC_000001.10:g.228786288G>C, NW_018654708.1:g.227868G>A, NW_018654708.1:g.227868G>C, NR_002834.2:n.601G>A, NR_002834.2:n.601G>C, NR_002834.1:n.601G>A, NR_002834.1:n.601G>C

Select item 14880991999.

rs1488099199 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:228651130 (GRCh38)
1:228786877 (GRCh37)
Canonical SPDI:: NC_000001.11:228651129:C:A
Gene:: RHOU (Varview), DUSP5P1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.228651130C>A, NC_000001.10:g.228786877C>A, NW_018654708.1:g.228457C>A, NR_002834.2:n.1190C>A, NR_002834.1:n.1190C>A

Select item 148804856810.

rs1488048568 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:228650182 (GRCh38)
1:228785929 (GRCh37)
Canonical SPDI:: NC_000001.11:228650181:G:A
Gene:: RHOU (Varview), DUSP5P1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.228650182G>A, NC_000001.10:g.228785929G>A, NW_018654708.1:g.227509G>A, NR_002834.2:n.242G>A, NR_002834.1:n.242G>A

Select item 148792678911.

rs1487926789 [Homo sapiens]

Variant type:: INS
Alleles:: ->A [Show Flanks]
Chromosome:: 1:228646111 (GRCh38)
1:228781859 (GRCh37)
Canonical SPDI:: NC_000001.11:228646111::A
Gene:: RHOU (Varview), DUSP5P1 (Varview), RNA5S17 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.01526/181 (ALFA)
A=0.03129/189 (TOMMO)
HGVS:: NC_000001.11:g.228646111_228646112insA, NC_000001.10:g.228781858_228781859insA, NW_018654708.1:g.223440_223441insA, NR_023379.1:n.47_48insT

Select item 148786446012.

rs1487864460 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:228646710 (GRCh38)
1:228782457 (GRCh37)
Canonical SPDI:: NC_000001.11:228646709:C:T
Gene:: RHOU (Varview), DUSP5P1 (Varview), RNA5S17 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.228646710C>T, NC_000001.10:g.228782457C>T, NW_018654708.1:g.224038C>T, XM_047443122.1:c.-1310C>T

Select item 148711341913.

rs1487113419 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:228647964 (GRCh38)
1:228783711 (GRCh37)
Canonical SPDI:: NC_000001.11:228647963:G:A
Gene:: RHOU (Varview), DUSP5P1 (Varview), RNA5S17 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.228647964G>A, NC_000001.10:g.228783711G>A, NG_033349.1:g.169C>T, NW_018654708.1:g.225291G>A, NM_152664.1:c.-57G>A, XM_047443122.1:c.-57G>A

Select item 148677313414.

rs1486773134 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:228652862 (GRCh38)
1:228788609 (GRCh37)
Canonical SPDI:: NC_000001.11:228652861:A:G
Gene:: RHOU (Varview), DUSP5P1 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.228652862A>G, NC_000001.10:g.228788609A>G, NW_018654708.1:g.230189A>G

Select item 148672099715.

rs1486720997 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:228651791 (GRCh38)
1:228787538 (GRCh37)
Canonical SPDI:: NC_000001.11:228651790:T:G
Gene:: RHOU (Varview), DUSP5P1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.228651791T>G, NC_000001.10:g.228787538T>G, NW_018654708.1:g.229118T>G, NR_002834.2:n.1851T>G, NR_002834.1:n.1851T>G

Select item 148645349116.

rs1486453491 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:228646955 (GRCh38)
1:228782702 (GRCh37)
Canonical SPDI:: NC_000001.11:228646954:A:T
Gene:: RHOU (Varview), DUSP5P1 (Varview), RNA5S17 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.228646955A>T, NC_000001.10:g.228782702A>T, NW_018654708.1:g.224283A>T, XM_047443122.1:c.-1065A>T

Select item 148547628417.

rs1485476284 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 1:228647196 (GRCh38)
1:228782943 (GRCh37)
Canonical SPDI:: NC_000001.11:228647195:G:C,NC_000001.11:228647195:G:T
Gene:: RHOU (Varview), DUSP5P1 (Varview), RNA5S17 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.228647196G>C, NC_000001.11:g.228647196G>T, NC_000001.10:g.228782943G>C, NC_000001.10:g.228782943G>T, NW_018654708.1:g.224523G>C, NW_018654708.1:g.224523G>T, XM_047443122.1:c.-825G>C, XM_047443122.1:c.-825G>T

Select item 148500885118.

rs1485008851 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:228648053 (GRCh38)
1:228783800 (GRCh37)
Canonical SPDI:: NC_000001.11:228648052:G:A
Gene:: RHOU (Varview), DUSP5P1 (Varview), RNA5S17 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000001.11:g.228648053G>A, NC_000001.10:g.228783800G>A, NG_033349.1:g.80C>T, NW_018654708.1:g.225380G>A, NM_152664.1:c.33G>A, XM_047443122.1:c.33G>A

Select item 148466216719.

rs1484662167 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:228647008 (GRCh38)
1:228782755 (GRCh37)
Canonical SPDI:: NC_000001.11:228647007:G:A,NC_000001.11:228647007:G:C
Gene:: RHOU (Varview), DUSP5P1 (Varview), RNA5S17 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000022/3 (GnomAD)
C=0.000156/1 (1000Genomes)
HGVS:: NC_000001.11:g.228647008G>A, NC_000001.11:g.228647008G>C, NC_000001.10:g.228782755G>A, NC_000001.10:g.228782755G>C, NW_018654708.1:g.224336G>A, NW_018654708.1:g.224336G>C, XM_047443122.1:c.-1012G>A, XM_047443122.1:c.-1012G>C

Select item 148440603620.

rs1484406036 has merged into rs71180800 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTCTTTCTTTCT>-,TTCT,TTCTTTCT,TTCTTTCTTTCTTTCT,TTCTTTCTTTCTTTCTTTCT,TTCTTTCTTTCTTTCTTTCTTTCT [Show Flanks]
Chromosome:: 1:228648874 (GRCh38)
1:228784621 (GRCh37)
Canonical SPDI:: NC_000001.11:228648858:TCTTTCTTTCTTTCTTTCTTTCTTTCT:TCTTTCTTTCTTTCT,NC_000001.11:228648858:TCTTTCTTTCTTTCTTTCTTTCTTTCT:TCTTTCTTTCTTTCTTTCT,NC_000001.11:228648858:TCTTTCTTTCTTTCTTTCTTTCTTTCT:TCTTTCTTTCTTTCTTTCTTTCT,NC_000001.11:228648858:TCTTTCTTTCTTTCTTTCTTTCTTTCT:TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT,NC_000001.11:228648858:TCTTTCTTTCTTTCTTTCTTTCTTTCT:TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT,NC_000001.11:228648858:TCTTTCTTTCTTTCTTTCTTTCTTTCT:TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
Gene:: RHOU (Varview), DUSP5P1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCTTTCTTTCTTTCTTTCT=0./0 (ALFA)
-=0.2763/1368 (1000Genomes)
HGVS:: NC_000001.11:g.228648862TTCT[3], NC_000001.11:g.228648862TTCT[4], NC_000001.11:g.228648862TTCT[5], NC_000001.11:g.228648862TTCT[7], NC_000001.11:g.228648862TTCT[8], NC_000001.11:g.228648862TTCT[9], NC_000001.10:g.228784609TTCT[3], NC_000001.10:g.228784609TTCT[4], NC_000001.10:g.228784609TTCT[5], NC_000001.10:g.228784609TTCT[7], NC_000001.10:g.228784609TTCT[8], NC_000001.10:g.228784609TTCT[9], NW_018654708.1:g.226189TTCT[3], NW_018654708.1:g.226189TTCT[4], NW_018654708.1:g.226189TTCT[5], NW_018654708.1:g.226189TTCT[7], NW_018654708.1:g.226189TTCT[8], NW_018654708.1:g.226189TTCT[9], NM_152664.1:c.*287TTCT[3], NM_152664.1:c.*287TTCT[4], NM_152664.1:c.*287TTCT[5], NM_152664.1:c.*287TTCT[7], NM_152664.1:c.*287TTCT[8], NM_152664.1:c.*287TTCT[9], XM_047443122.1:c.*287TTCT[3], XM_047443122.1:c.*287TTCT[4], XM_047443122.1:c.*287TTCT[5], XM_047443122.1:c.*287TTCT[7], XM_047443122.1:c.*287TTCT[8], XM_047443122.1:c.*287TTCT[9]

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Items: 1 to 20 of 1991

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