SNP Links for Gene (Select 574457) - SNP

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Select item 14902626761.

rs1490262676 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:13875151 (GRCh38)
19:13985965 (GRCh37)
Canonical SPDI:: NC_000019.10:13875150:G:A
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.13875151G>A, NC_000019.9:g.13985965G>A, NW_021160022.1:g.86992G>A

Select item 14893461072.

rs1489346107 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:13872889 (GRCh38)
19:13983703 (GRCh37)
Canonical SPDI:: NC_000019.10:13872888:G:A
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.13872889G>A, NC_000019.9:g.13983703G>A, NW_021160022.1:g.84730G>A

Select item 14890814473.

rs1489081447 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 19:13874259 (GRCh38)
19:13985073 (GRCh37)
Canonical SPDI:: NC_000019.10:13874258:G:A,NC_000019.10:13874258:G:C
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.13874259G>A, NC_000019.10:g.13874259G>C, NC_000019.9:g.13985073G>A, NC_000019.9:g.13985073G>C, NW_021160022.1:g.86100G>A, NW_021160022.1:g.86100G>C

Select item 14887980604.

rs1488798060 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 19:13873258 (GRCh38)
19:13984072 (GRCh37)
Canonical SPDI:: NC_000019.10:13873257:A:T
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.00001/1 (GnomAD)
HGVS:: NC_000019.10:g.13873258A>T, NC_000019.9:g.13984072A>T, NW_021160022.1:g.85099A>T

Select item 14887812715.

rs1488781271 [Homo sapiens]

Variant type:: SNV:
Alleles:: T>A
Chromosome:: no mapping
Canonical SPDI:

Select item 14882746496.

rs1488274649 [Homo sapiens]

Variant type:: DELINS
Alleles:: ACC>- [Show Flanks]
Chromosome:: 19:13874185 (GRCh38)
19:13984999 (GRCh37)
Canonical SPDI:: NC_000019.10:13874182:CCACC:CC
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
-=0.000008/2 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.13874185_13874187del, NC_000019.9:g.13984999_13985001del, NW_021160022.1:g.86026_86028del

Select item 14881199457.

rs1488119945 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:13875361 (GRCh38)
19:13986175 (GRCh37)
Canonical SPDI:: NC_000019.10:13875360:A:G
Gene:: NANOS3 (Varview), MIR181D (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.13875361A>G, NC_000019.9:g.13986175A>G, NW_021160022.1:g.87202A>G

Select item 14871975778.

rs1487197577 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:13873160 (GRCh38)
19:13983974 (GRCh37)
Canonical SPDI:: NC_000019.10:13873159:A:G
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.13873160A>G, NC_000019.9:g.13983974A>G, NW_021160022.1:g.85001A>G

Select item 14871768889.

rs1487176888 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:13875143 (GRCh38)
19:13985957 (GRCh37)
Canonical SPDI:: NC_000019.10:13875142:A:G
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.13875143A>G, NC_000019.9:g.13985957A>G, NW_021160022.1:g.86984A>G

Select item 148716054910.

rs1487160549 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:13873538 (GRCh38)
19:13984352 (GRCh37)
Canonical SPDI:: NC_000019.10:13873537:G:C
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.13873538G>C, NC_000019.9:g.13984352G>C, NW_021160022.1:g.85379G>C

Select item 148647740211.

rs1486477402 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:13874920 (GRCh38)
19:13985734 (GRCh37)
Canonical SPDI:: NC_000019.10:13874919:G:T
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,downstream_transcript_variant,genic_upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.13874920G>T, NC_000019.9:g.13985734G>T, NW_021160022.1:g.86761G>T, NR_030179.1:n.46G>T

Select item 148640534812.

rs1486405348 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:13873970 (GRCh38)
19:13984784 (GRCh37)
Canonical SPDI:: NC_000019.10:13873969:G:A
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.13873970G>A, NC_000019.9:g.13984784G>A, NW_021160022.1:g.85811G>A

Select item 148622716513.

rs1486227165 [Homo sapiens]

Variant type:: DELINS
Alleles:: CGG>- [Show Flanks]
Chromosome:: 19:13873910 (GRCh38)
19:13984724 (GRCh37)
Canonical SPDI:: NC_000019.10:13873907:GGCGG:GG
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: -=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.13873910_13873912del, NC_000019.9:g.13984724_13984726del, NW_021160022.1:g.85751_85753del

Select item 148207851014.

rs1482078510 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:13873770 (GRCh38)
19:13984584 (GRCh37)
Canonical SPDI:: NC_000019.10:13873769:A:G
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000019.10:g.13873770A>G, NC_000019.9:g.13984584A>G, NW_021160022.1:g.85611A>G

Select item 148130040515.

rs1481300405 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:13873840 (GRCh38)
19:13984654 (GRCh37)
Canonical SPDI:: NC_000019.10:13873839:G:C
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.13873840G>C, NC_000019.9:g.13984654G>C, NW_021160022.1:g.85681G>C

Select item 148091440316.

rs1480914403 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 19:13875292 (GRCh38)
19:13986106 (GRCh37)
Canonical SPDI:: NC_000019.10:13875291:T:A,NC_000019.10:13875291:T:C
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000019.10:g.13875292T>A, NC_000019.10:g.13875292T>C, NC_000019.9:g.13986106T>A, NC_000019.9:g.13986106T>C, NW_021160022.1:g.87133T>A, NW_021160022.1:g.87133T>C

Select item 148007587117.

rs1480075871 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:13873074 (GRCh38)
19:13983888 (GRCh37)
Canonical SPDI:: NC_000019.10:13873073:A:G
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00016/1 (1000Genomes)
HGVS:: NC_000019.10:g.13873074A>G, NC_000019.9:g.13983888A>G, NW_021160022.1:g.84915A>G

Select item 147947351818.

rs1479473518 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:13874999 (GRCh38)
19:13985813 (GRCh37)
Canonical SPDI:: NC_000019.10:13874998:G:A
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,downstream_transcript_variant,genic_upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000019.10:g.13874999G>A, NC_000019.9:g.13985813G>A, NW_021160022.1:g.86840G>A, NR_030179.1:n.125G>A

Select item 147924723119.

rs1479247231 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:13874820 (GRCh38)
19:13985634 (GRCh37)
Canonical SPDI:: NC_000019.10:13874819:C:T
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,downstream_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.13874820C>T, NC_000019.9:g.13985634C>T, NW_021160022.1:g.86661C>T

Select item 147863306520.

rs1478633065 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 19:13872878 (GRCh38)
19:13983692 (GRCh37)
Canonical SPDI:: NC_000019.10:13872877:T:C,NC_000019.10:13872877:T:G
Gene:: NANOS3 (Varview), MIR181C (Varview), MIR181D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.13872878T>C, NC_000019.10:g.13872878T>G, NC_000019.9:g.13983692T>C, NC_000019.9:g.13983692T>G, NW_021160022.1:g.84719T>C, NW_021160022.1:g.84719T>G

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