Links from Gene
Items: 1 to 20 of 10065
1.
rs1491467362 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->AAACTC
[Show Flanks]
- Chromosome:
- 19:18864640
(GRCh38)
19:18975450
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18864640:CTCAAACTC:CTCAAACTCAAACTC
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
CTCAAACTCAAACTC=0./0
(
ALFA)
CTCAAA=0.000007/1
(GnomAD)
CTCAAA=0.000015/4
(TOPMED)
- HGVS:
2.
rs1491456722 has merged into rs72080135 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- GTGTGTGTGTGTGTGTGTGT>-,GT,GTGT,GTGTGT,GTGTGTGT,GTGTGTGTGT,GTGTGTGTGTGT,GTGTGTGTGTGTGT,GTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
[Show Flanks]
- Chromosome:
- 19:18843733
(GRCh38)
19:18954542
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18843717:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGT,NC_000019.10:18843717:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGT,NC_000019.10:18843717:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGT,NC_000019.10:18843717:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGT,NC_000019.10:18843717:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGT,NC_000019.10:18843717:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGT,NC_000019.10:18843717:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000019.10:18843717:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000019.10:18843717:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000019.10:18843717:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000019.10:18843717:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000019.10:18843717:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000019.10:18843717:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000019.10:18843717:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000019.10:18843717:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000019.10:18843717:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000019.10:18843717:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TGTGTGTGTGTGTGTGT=0./0
(
ALFA)
- HGVS:
NC_000019.10:g.18843719GT[7], NC_000019.10:g.18843719GT[8], NC_000019.10:g.18843719GT[9], NC_000019.10:g.18843719GT[10], NC_000019.10:g.18843719GT[11], NC_000019.10:g.18843719GT[12], NC_000019.10:g.18843719GT[13], NC_000019.10:g.18843719GT[14], NC_000019.10:g.18843719GT[15], NC_000019.10:g.18843719GT[16], NC_000019.10:g.18843719GT[18], NC_000019.10:g.18843719GT[19], NC_000019.10:g.18843719GT[20], NC_000019.10:g.18843719GT[21], NC_000019.10:g.18843719GT[22], NC_000019.10:g.18843719GT[23], NC_000019.10:g.18843719GT[24], NC_000019.9:g.18954528GT[7], NC_000019.9:g.18954528GT[8], NC_000019.9:g.18954528GT[9], NC_000019.9:g.18954528GT[10], NC_000019.9:g.18954528GT[11], NC_000019.9:g.18954528GT[12], NC_000019.9:g.18954528GT[13], NC_000019.9:g.18954528GT[14], NC_000019.9:g.18954528GT[15], NC_000019.9:g.18954528GT[16], NC_000019.9:g.18954528GT[18], NC_000019.9:g.18954528GT[19], NC_000019.9:g.18954528GT[20], NC_000019.9:g.18954528GT[21], NC_000019.9:g.18954528GT[22], NC_000019.9:g.18954528GT[23], NC_000019.9:g.18954528GT[24]
3.
rs1491386204 has merged into rs1437817172 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- GT>-,GTGT
[Show Flanks]
- Chromosome:
- 19:18843518
(GRCh38)
19:18954327
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18843516:TGT:T,NC_000019.10:18843516:TGT:TGTGT
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TGTGT=0./0
(
ALFA)
TG=0.000004/1
(TOPMED)
-=0.000078/1
(TOMMO)
-=0.000312/2
(1000Genomes)
-=0.000612/48
(GnomAD)
- HGVS:
4.
rs1491313444 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->G
[Show Flanks]
- Chromosome:
- 19:18843517
(GRCh38)
19:18954327
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18843517:G:GG
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
GG=0./0
(
ALFA)
G=0.00001/1
(GnomAD)
- HGVS:
5.
rs1491286053 [Homo sapiens]- Variant type:
- INS
- Alleles:
- ->C,G
[Show Flanks]
- Chromosome:
- 19:18864734
(GRCh38)
19:18975544
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18864734::C,NC_000019.10:18864734::G
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.0001/1
(GnomAD)
C=0.0005/13
(TOMMO)
- HGVS:
6.
rs1491217103 has merged into rs10682791 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 19:18864744
(GRCh38)
19:18975553
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:18864733:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
- HGVS:
NC_000019.10:g.18864744_18864756del, NC_000019.10:g.18864745_18864756del, NC_000019.10:g.18864746_18864756del, NC_000019.10:g.18864747_18864756del, NC_000019.10:g.18864748_18864756del, NC_000019.10:g.18864749_18864756del, NC_000019.10:g.18864750_18864756del, NC_000019.10:g.18864751_18864756del, NC_000019.10:g.18864752_18864756del, NC_000019.10:g.18864753_18864756del, NC_000019.10:g.18864755_18864756del, NC_000019.10:g.18864756del, NC_000019.10:g.18864756dup, NC_000019.10:g.18864755_18864756dup, NC_000019.10:g.18864754_18864756dup, NC_000019.10:g.18864753_18864756dup, NC_000019.10:g.18864752_18864756dup, NC_000019.10:g.18864751_18864756dup, NC_000019.10:g.18864750_18864756dup, NC_000019.10:g.18864749_18864756dup, NC_000019.10:g.18864748_18864756dup, NC_000019.10:g.18864747_18864756dup, NC_000019.10:g.18864746_18864756dup, NC_000019.10:g.18864736_18864756dup, NC_000019.10:g.18864756_18864757insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000019.10:g.18864756_18864757insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000019.10:g.18864756_18864757insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000019.9:g.18975553_18975565del, NC_000019.9:g.18975554_18975565del, NC_000019.9:g.18975555_18975565del, NC_000019.9:g.18975556_18975565del, NC_000019.9:g.18975557_18975565del, NC_000019.9:g.18975558_18975565del, NC_000019.9:g.18975559_18975565del, NC_000019.9:g.18975560_18975565del, NC_000019.9:g.18975561_18975565del, NC_000019.9:g.18975562_18975565del, NC_000019.9:g.18975564_18975565del, NC_000019.9:g.18975565del, NC_000019.9:g.18975565dup, NC_000019.9:g.18975564_18975565dup, NC_000019.9:g.18975563_18975565dup, NC_000019.9:g.18975562_18975565dup, NC_000019.9:g.18975561_18975565dup, NC_000019.9:g.18975560_18975565dup, NC_000019.9:g.18975559_18975565dup, NC_000019.9:g.18975558_18975565dup, NC_000019.9:g.18975557_18975565dup, NC_000019.9:g.18975556_18975565dup, NC_000019.9:g.18975555_18975565dup, NC_000019.9:g.18975545_18975565dup, NC_000019.9:g.18975565_18975566insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000019.9:g.18975565_18975566insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000019.9:g.18975565_18975566insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7.
rs1490950968 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 19:18851471
(GRCh38)
19:18962280
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18851470:G:A
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000015/4
(TOPMED)
G=0.5/1
(SGDP_PRJ)
- HGVS:
8.
rs1490913748 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A
[Show Flanks]
- Chromosome:
- 19:18832500
(GRCh38)
19:18943309
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18832499:C:A
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000014/2
(GnomAD)
A=0.00003/8
(TOPMED)
- HGVS:
9.
rs1490732544 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 19:18846718
(GRCh38)
19:18957527
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18846717:C:T
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000011/3
(TOPMED)
- HGVS:
10.
rs1490702774 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 19:18865371
(GRCh38)
19:18976180
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18865370:C:T
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- synonymous_variant,coding_sequence_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000007/1
(GnomAD)
- HGVS:
NC_000019.10:g.18865371C>T, NC_000019.9:g.18976180C>T, NM_002911.4:c.2940C>T, NM_002911.3:c.2940C>T, XM_017027105.3:c.2997C>T, XM_017027105.2:c.2997C>T, XM_017027105.1:c.2997C>T, XM_017027106.3:c.2964C>T, XM_017027106.2:c.2964C>T, XM_017027106.1:c.2964C>T, NM_001297549.2:c.2973C>T, NM_001297549.1:c.2973C>T, XM_047439191.1:c.2868C>T
11.
rs1490677058 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>C,T
[Show Flanks]
- Chromosome:
- 19:18866361
(GRCh38)
19:18977170
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18866360:A:C,NC_000019.10:18866360:A:T
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000007/1
(GnomAD)
- HGVS:
12.
rs1490658515 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- GT>-
[Show Flanks]
- Chromosome:
- 19:18858973
(GRCh38)
19:18969782
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18858972:GT:
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
-=0./0
(
ALFA)
-=0.000004/1
(TOPMED)
-=0.000007/1
(GnomAD)
- HGVS:
13.
rs1490641542 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>C
[Show Flanks]
- Chromosome:
- 19:18859875
(GRCh38)
19:18970684
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18859874:G:C
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
- HGVS:
14.
rs1490604522 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>C
[Show Flanks]
- Chromosome:
- 19:18866147
(GRCh38)
19:18976956
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18866146:G:C
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- missense_variant,coding_sequence_variant
- HGVS:
NC_000019.10:g.18866147G>C, NC_000019.9:g.18976956G>C, NM_002911.4:c.3341G>C, NM_002911.3:c.3341G>C, XM_017027105.3:c.3398G>C, XM_017027105.2:c.3398G>C, XM_017027105.1:c.3398G>C, XM_017027106.3:c.3365G>C, XM_017027106.2:c.3365G>C, XM_017027106.1:c.3365G>C, NM_001297549.2:c.3374G>C, NM_001297549.1:c.3374G>C, XM_047439191.1:c.3269G>C, NP_002902.2:p.Gly1114Ala, XP_016882594.1:p.Gly1133Ala, XP_016882595.1:p.Gly1122Ala, NP_001284478.1:p.Gly1125Ala, XP_047295147.1:p.Gly1090Ala
15.
rs1490537361 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 19:18844212
(GRCh38)
19:18955021
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18844211:A:G
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
- HGVS:
16.
rs1490531875 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 19:18845028
(GRCh38)
19:18955837
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18845027:G:A
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
- HGVS:
17.
rs1490249912 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 19:18839457
(GRCh38)
19:18950266
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18839456:G:A
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000008/2
(TOPMED)
A=0.000014/2
(GnomAD)
- HGVS:
18.
rs1490247165 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 19:18852685
(GRCh38)
19:18963494
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18852684:C:T
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0.000084/1
(
ALFA)
T=0.000043/5
(GnomAD)
- HGVS:
19.
rs1490188115 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->AGGCCCCGCTCC
[Show Flanks]
- Chromosome:
- 19:18866763
(GRCh38)
19:18977573
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18866763:AGGCCCCGCTCC:AGGCCCCGCTCCAGGCCCCGCTCC
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- 3_prime_UTR_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AGGCCCCGCTCCAGGCCCCGCTCC=0./0
(
ALFA)
AGGCCCCGCTCC=0.000004/1
(TOPMED)
- HGVS:
NC_000019.10:g.18866764_18866775dup, NC_000019.9:g.18977573_18977584dup, NG_033056.1:g.34370_34381dup, NG_012070.1:g.34370_34381dup, NM_002911.4:c.*247_*258dup, NM_002911.3:c.*247_*258dup, XM_017027105.3:c.*247_*258dup, XM_017027105.2:c.*247_*258dup, XM_017027105.1:c.*247_*258dup, XM_017027106.3:c.*247_*258dup, XM_017027106.2:c.*247_*258dup, XM_017027106.1:c.*247_*258dup, NM_001297549.2:c.*247_*258dup, NM_001297549.1:c.*247_*258dup, XM_047439191.1:c.*247_*258dup
20.
rs1490180837 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- GG>-
[Show Flanks]
- Chromosome:
- 19:18846442
(GRCh38)
19:18957251
(GRCh37)
- Canonical SPDI:
- NC_000019.10:18846440:GGG:G
- Gene:
- UPF1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
G=0./0
(
ALFA)
-=0.000004/1
(TOPMED)
- HGVS: