SNP Links for Gene (Select 6079) - SNP

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Select item 14898280061.

rs1489828006 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:75399228 (GRCh38)
11:75110272 (GRCh37)
Canonical SPDI:: NC_000011.10:75399227:G:A
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000064/9 (GnomAD)
A=0.000113/30 (TOPMED)
A=0.000312/2 (1000Genomes)
HGVS:: NC_000011.10:g.75399228G>A, NC_000011.9:g.75110272G>A

Select item 14888843712.

rs1488884371 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 11:75400997 (GRCh38)
11:75112041 (GRCh37)
Canonical SPDI:: NC_000011.10:75400996:G:A,NC_000011.10:75400996:G:C,NC_000011.10:75400996:G:T
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.75400997G>A, NC_000011.10:g.75400997G>C, NC_000011.10:g.75400997G>T, NC_000011.9:g.75112041G>A, NC_000011.9:g.75112041G>C, NC_000011.9:g.75112041G>T

Select item 14882376233.

rs1488237623 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:75400202 (GRCh38)
11:75111246 (GRCh37)
Canonical SPDI:: NC_000011.10:75400201:G:C
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.75400202G>C, NC_000011.9:g.75111246G>C

Select item 14858106974.

rs1485810697 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:75399815 (GRCh38)
11:75110859 (GRCh37)
Canonical SPDI:: NC_000011.10:75399814:C:G
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000011.10:g.75399815C>G, NC_000011.9:g.75110859C>G

Select item 14851599675.

rs1485159967 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 11:75399136 (GRCh38)
11:75110180 (GRCh37)
Canonical SPDI:: NC_000011.10:75399135:T:A,NC_000011.10:75399135:T:C
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.75399136T>A, NC_000011.10:g.75399136T>C, NC_000011.9:g.75110180T>A, NC_000011.9:g.75110180T>C

Select item 14836429526.

rs1483642952 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:75400087 (GRCh38)
11:75111131 (GRCh37)
Canonical SPDI:: NC_000011.10:75400086:T:C
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000142/2 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000011.10:g.75400087T>C, NC_000011.9:g.75111131T>C

Select item 14835372077.

rs1483537207 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:75400933 (GRCh38)
11:75111977 (GRCh37)
Canonical SPDI:: NC_000011.10:75400932:A:C
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.75400933A>C, NC_000011.9:g.75111977A>C

Select item 14827931428.

rs1482793142 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:75399980 (GRCh38)
11:75111024 (GRCh37)
Canonical SPDI:: NC_000011.10:75399979:C:G
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.75399980C>G, NC_000011.9:g.75111024C>G

Select item 14815823929.

rs1481582392 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 11:75398875 (GRCh38)
11:75109919 (GRCh37)
Canonical SPDI:: NC_000011.10:75398874:TTTT:TTT
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: TTT=0./0 (ALFA)
HGVS:: NC_000011.10:g.75398878del, NC_000011.9:g.75109922del

Select item 147734500310.

rs1477345003 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:75399699 (GRCh38)
11:75110743 (GRCh37)
Canonical SPDI:: NC_000011.10:75399698:C:T
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.75399699C>T, NC_000011.9:g.75110743C>T

Select item 147622147211.

rs1476221472 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:75398671 (GRCh38)
11:75109715 (GRCh37)
Canonical SPDI:: NC_000011.10:75398670:G:A
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.75398671G>A, NC_000011.9:g.75109715G>A

Select item 147592402512.

rs1475924025 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:75400852 (GRCh38)
11:75111896 (GRCh37)
Canonical SPDI:: NC_000011.10:75400851:T:G
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.75400852T>G, NC_000011.9:g.75111896T>G

Select item 147528358713.

rs1475283587 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:75399948 (GRCh38)
11:75110992 (GRCh37)
Canonical SPDI:: NC_000011.10:75399947:A:G
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.75399948A>G, NC_000011.9:g.75110992A>G

Select item 147523349114.

rs1475233491 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:75399123 (GRCh38)
11:75110167 (GRCh37)
Canonical SPDI:: NC_000011.10:75399122:A:G
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.75399123A>G, NC_000011.9:g.75110167A>G

Select item 147522250915.

rs1475222509 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:75398850 (GRCh38)
11:75109894 (GRCh37)
Canonical SPDI:: NC_000011.10:75398849:G:A
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.75398850G>A, NC_000011.9:g.75109894G>A

Select item 147488157016.

rs1474881570 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:75399288 (GRCh38)
11:75110332 (GRCh37)
Canonical SPDI:: NC_000011.10:75399287:A:C
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000023/6 (TOPMED)
C=0.000106/3 (TOMMO)
HGVS:: NC_000011.10:g.75399288A>C, NC_000011.9:g.75110332A>C

Select item 147464373617.

rs1474643736 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:75399258 (GRCh38)
11:75110302 (GRCh37)
Canonical SPDI:: NC_000011.10:75399257:T:C
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.75399258T>C, NC_000011.9:g.75110302T>C

Select item 147343942818.

rs1473439428 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 11:75400976 (GRCh38)
11:75112020 (GRCh37)
Canonical SPDI:: NC_000011.10:75400975:G:A,NC_000011.10:75400975:G:T
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000546/1 (Korea1K)
HGVS:: NC_000011.10:g.75400976G>A, NC_000011.10:g.75400976G>T, NC_000011.9:g.75112020G>A, NC_000011.9:g.75112020G>T

Select item 147238516919.

rs1472385169 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 11:75400922 (GRCh38)
11:75111966 (GRCh37)
Canonical SPDI:: NC_000011.10:75400921:C:A,NC_000011.10:75400921:C:G
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.75400922C>A, NC_000011.10:g.75400922C>G, NC_000011.9:g.75111966C>A, NC_000011.9:g.75111966C>G

Select item 147085942120.

rs1470859421 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:75399805 (GRCh38)
11:75110849 (GRCh37)
Canonical SPDI:: NC_000011.10:75399804:C:G
Gene:: SNORD15A (Varview), RPS3 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.75399805C>G, NC_000011.9:g.75110849C>G

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