SNP Links for Gene (Select 6280) - SNP

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Items: 1 to 20 of 1378

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Select item 14901528201.

rs1490152820 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:153356459 (GRCh38)
1:153328935 (GRCh37)
Canonical SPDI:: NC_000001.11:153356458:T:C
Gene:: S100A9 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0./0 (GnomAD)
C=0.000019/5 (TOPMED)
C=0.000684/2 (KOREAN)
C=0.000708/12 (TOMMO)
HGVS:: NC_000001.11:g.153356459T>C, NC_000001.10:g.153328935T>C

Select item 14899303142.

rs1489930314 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:153357295 (GRCh38)
1:153329771 (GRCh37)
Canonical SPDI:: NC_000001.11:153357294:G:A
Gene:: S100A9 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.153357295G>A, NC_000001.10:g.153329771G>A

Select item 14898790273.

rs1489879027 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:153358217 (GRCh38)
1:153330693 (GRCh37)
Canonical SPDI:: NC_000001.11:153358216:C:T
Gene:: S100A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.153358217C>T, NC_000001.10:g.153330693C>T

Select item 14894126254.

rs1489412625 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 1:153356466 (GRCh38)
1:153328942 (GRCh37)
Canonical SPDI:: NC_000001.11:153356465:T:
Gene:: S100A9 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0.000071/1 (ALFA)
-=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.153356466del, NC_000001.10:g.153328942del

Select item 14891965595.

rs1489196559 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:153361380 (GRCh38)
1:153333856 (GRCh37)
Canonical SPDI:: NC_000001.11:153361379:T:C
Gene:: S100A9 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.153361380T>C, NC_000001.10:g.153333856T>C

Select item 14885158276.

rs1488515827 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:153356695 (GRCh38)
1:153329171 (GRCh37)
Canonical SPDI:: NC_000001.11:153356694:T:C
Gene:: S100A9 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.153356695T>C, NC_000001.10:g.153329171T>C

Select item 14866746707.

rs1486674670 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:153360827 (GRCh38)
1:153333303 (GRCh37)
Canonical SPDI:: NC_000001.11:153360826:G:A
Gene:: S100A9 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.00003/8 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000001.11:g.153360827G>A, NC_000001.10:g.153333303G>A, NM_002965.4:c.334G>A, NM_002965.3:c.334G>A, NP_002956.1:p.Gly112Ser

Select item 14865591368.

rs1486559136 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 1:153358766 (GRCh38)
1:153331242 (GRCh37)
Canonical SPDI:: NC_000001.11:153358765:A:G,NC_000001.11:153358765:A:T
Gene:: S100A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.153358766A>G, NC_000001.11:g.153358766A>T, NC_000001.10:g.153331242A>G, NC_000001.10:g.153331242A>T

Select item 14859044359.

rs1485904435 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:153357663 (GRCh38)
1:153330139 (GRCh37)
Canonical SPDI:: NC_000001.11:153357662:T:C
Gene:: S100A9 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.153357663T>C, NC_000001.10:g.153330139T>C

Select item 148570128710.

rs1485701287 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:153361240 (GRCh38)
1:153333716 (GRCh37)
Canonical SPDI:: NC_000001.11:153361239:G:C
Gene:: S100A9 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
C=0.000248/4 (TOMMO)
C=0.001092/2 (Korea1K)
C=0.001369/4 (KOREAN)
HGVS:: NC_000001.11:g.153361240G>C, NC_000001.10:g.153333716G>C

Select item 148504656411.

rs1485046564 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 1:153360256 (GRCh38)
1:153332733 (GRCh37)
Canonical SPDI:: NC_000001.11:153360256:T:TT
Gene:: S100A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.153360257dup, NC_000001.10:g.153332733dup

Select item 148433905912.

rs1484339059 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:153359713 (GRCh38)
1:153332189 (GRCh37)
Canonical SPDI:: NC_000001.11:153359712:A:G
Gene:: S100A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000009/1 (GnomAD)
HGVS:: NC_000001.11:g.153359713A>G, NC_000001.10:g.153332189A>G

Select item 148365087513.

rs1483650875 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:153356559 (GRCh38)
1:153329035 (GRCh37)
Canonical SPDI:: NC_000001.11:153356558:C:T
Gene:: S100A9 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.153356559C>T, NC_000001.10:g.153329035C>T

Select item 148337638314.

rs1483376383 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:153360890 (GRCh38)
1:153333366 (GRCh37)
Canonical SPDI:: NC_000001.11:153360889:G:A
Gene:: S100A9 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.153360890G>A, NC_000001.10:g.153333366G>A, NM_002965.4:c.*52G>A, NM_002965.3:c.*52G>A

Select item 148276338915.

rs1482763389 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAT>- [Show Flanks]
Chromosome:: 1:153359095 (GRCh38)
1:153331571 (GRCh37)
Canonical SPDI:: NC_000001.11:153359092:ATGAT:AT
Gene:: S100A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AT=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.153359095_153359097del, NC_000001.10:g.153331571_153331573del

Select item 148266279116.

rs1482662791 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:153356983 (GRCh38)
1:153329459 (GRCh37)
Canonical SPDI:: NC_000001.11:153356982:G:A
Gene:: S100A9 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.153356983G>A, NC_000001.10:g.153329459G>A

Select item 148228996417.

rs1482289964 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:153356813 (GRCh38)
1:153329289 (GRCh37)
Canonical SPDI:: NC_000001.11:153356812:G:C
Gene:: S100A9 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.153356813G>C, NC_000001.10:g.153329289G>C

Select item 148191098518.

rs1481910985 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:153360426 (GRCh38)
1:153332902 (GRCh37)
Canonical SPDI:: NC_000001.11:153360425:C:G
Gene:: S100A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.153360426C>G, NC_000001.10:g.153332902C>G

Select item 147956935519.

rs1479569355 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:153356653 (GRCh38)
1:153329129 (GRCh37)
Canonical SPDI:: NC_000001.11:153356652:C:T
Gene:: S100A9 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.153356653C>T, NC_000001.10:g.153329129C>T

Select item 147949823320.

rs1479498233 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:153357586 (GRCh38)
1:153330062 (GRCh37)
Canonical SPDI:: NC_000001.11:153357585:C:T
Gene:: S100A9 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.153357586C>T, NC_000001.10:g.153330062C>T

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