SNP Links for Gene (Select 6357) - SNP

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Select item 14903091351.

rs1490309135 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 17:34359086 (GRCh38)
17:32686105 (GRCh37)
Canonical SPDI:: NC_000017.11:34359085:T:A
Gene:: CCL13 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.34359086T>A, NC_000017.10:g.32686105T>A

Select item 14885437912.

rs1488543791 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:34357654 (GRCh38)
17:32684673 (GRCh37)
Canonical SPDI:: NC_000017.11:34357653:T:C
Gene:: CCL13 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000026/7 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000017.11:g.34357654T>C, NC_000017.10:g.32684673T>C

Select item 14877034313.

rs1487703431 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:34355778 (GRCh38)
17:32682797 (GRCh37)
Canonical SPDI:: NC_000017.11:34355777:G:A
Gene:: CCL13 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.34355778G>A, NC_000017.10:g.32682797G>A

Select item 14875506014.

rs1487550601 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 17:34358251 (GRCh38)
17:32685270 (GRCh37)
Canonical SPDI:: NC_000017.11:34358250:G:A,NC_000017.11:34358250:G:T
Gene:: CCL13 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000034/9 (TOPMED)
A=0.000036/5 (GnomAD)
HGVS:: NC_000017.11:g.34358251G>A, NC_000017.11:g.34358251G>T, NC_000017.10:g.32685270G>A, NC_000017.10:g.32685270G>T, NM_005408.3:c.*120G>A, NM_005408.3:c.*120G>T, NM_005408.2:c.*120G>A, NM_005408.2:c.*120G>T

Select item 14869453875.

rs1486945387 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:34356388 (GRCh38)
17:32683407 (GRCh37)
Canonical SPDI:: NC_000017.11:34356387:G:A
Gene:: CCL13 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.34356388G>A, NC_000017.10:g.32683407G>A

Select item 14865029146.

rs1486502914 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 17:34358679 (GRCh38)
17:32685698 (GRCh37)
Canonical SPDI:: NC_000017.11:34358678:T:A,NC_000017.11:34358678:T:C
Gene:: CCL13 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000017.11:g.34358679T>A, NC_000017.11:g.34358679T>C, NC_000017.10:g.32685698T>A, NC_000017.10:g.32685698T>C

Select item 14859894257.

rs1485989425 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 17:34355694 (GRCh38)
17:32682713 (GRCh37)
Canonical SPDI:: NC_000017.11:34355693:G:C,NC_000017.11:34355693:G:T
Gene:: CCL13 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.34355694G>C, NC_000017.11:g.34355694G>T, NC_000017.10:g.32682713G>C, NC_000017.10:g.32682713G>T

Select item 14857690808.

rs1485769080 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:34357613 (GRCh38)
17:32684632 (GRCh37)
Canonical SPDI:: NC_000017.11:34357612:C:T
Gene:: CCL13 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.34357613C>T, NC_000017.10:g.32684632C>T

Select item 14848352169.

rs1484835216 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 17:34358896 (GRCh38)
17:32685915 (GRCh37)
Canonical SPDI:: NC_000017.11:34358895:C:A,NC_000017.11:34358895:C:G,NC_000017.11:34358895:C:T
Gene:: CCL13 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00034/1 (KOREAN)
G=0.00088/15 (TOMMO)
HGVS:: NC_000017.11:g.34358896C>A, NC_000017.11:g.34358896C>G, NC_000017.11:g.34358896C>T, NC_000017.10:g.32685915C>A, NC_000017.10:g.32685915C>G, NC_000017.10:g.32685915C>T

Select item 148465139110.

rs1484651391 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 17:34355855 (GRCh38)
17:32682874 (GRCh37)
Canonical SPDI:: NC_000017.11:34355854:G:C
Gene:: CCL13 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.34355855G>C, NC_000017.10:g.32682874G>C

Select item 148437801911.

rs1484378019 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:34354926 (GRCh38)
17:32681945 (GRCh37)
Canonical SPDI:: NC_000017.11:34354925:A:G
Gene:: CCL13 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.34354926A>G, NC_000017.10:g.32681945A>G

Select item 148432960412.

rs1484329604 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 17:34356519 (GRCh38)
17:32683538 (GRCh37)
Canonical SPDI:: NC_000017.11:34356518:C:A,NC_000017.11:34356518:C:G,NC_000017.11:34356518:C:T
Gene:: CCL13 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.34356519C>A, NC_000017.11:g.34356519C>G, NC_000017.11:g.34356519C>T, NC_000017.10:g.32683538C>A, NC_000017.10:g.32683538C>G, NC_000017.10:g.32683538C>T, NM_005408.3:c.-8C>A, NM_005408.3:c.-8C>G, NM_005408.3:c.-8C>T, NM_005408.2:c.-8C>A, NM_005408.2:c.-8C>G, NM_005408.2:c.-8C>T

Select item 148217404613.

rs1482174046 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:34356830 (GRCh38)
17:32683849 (GRCh37)
Canonical SPDI:: NC_000017.11:34356829:A:G
Gene:: CCL13 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000017.11:g.34356830A>G, NC_000017.10:g.32683849A>G

Select item 148164578414.

rs1481645784 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:34358879 (GRCh38)
17:32685898 (GRCh37)
Canonical SPDI:: NC_000017.11:34358878:T:C
Gene:: CCL13 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.34358879T>C, NC_000017.10:g.32685898T>C

Select item 148152360215.

rs1481523602 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:34355893 (GRCh38)
17:32682912 (GRCh37)
Canonical SPDI:: NC_000017.11:34355892:G:A
Gene:: CCL13 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000017.11:g.34355893G>A, NC_000017.10:g.32682912G>A

Select item 147943921616.

rs1479439216 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:34356179 (GRCh38)
17:32683198 (GRCh37)
Canonical SPDI:: NC_000017.11:34356178:G:A
Gene:: CCL13 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.34356179G>A, NC_000017.10:g.32683198G>A

Select item 147856476417.

rs1478564764 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 17:34357476 (GRCh38)
17:32684495 (GRCh37)
Canonical SPDI:: NC_000017.11:34357475:T:G
Gene:: CCL13 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.34357476T>G, NC_000017.10:g.32684495T>G, NM_005408.3:c.78T>G, NM_005408.2:c.78T>G, NP_005399.1:p.Asp26Glu

Select item 147851206418.

rs1478512064 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:34358057 (GRCh38)
17:32685076 (GRCh37)
Canonical SPDI:: NC_000017.11:34358056:G:A
Gene:: CCL13 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by cluster
MAF:: A=0.000004/1 (GnomAD_exomes)
A=0.000177/3 (TOMMO)
A=0.000342/1 (KOREAN)
HGVS:: NC_000017.11:g.34358057G>A, NC_000017.10:g.32685076G>A, NM_005408.3:c.223G>A, NM_005408.2:c.223G>A, NP_005399.1:p.Ala75Thr

Select item 147832386419.

rs1478323864 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 17:34355218 (GRCh38)
17:32682237 (GRCh37)
Canonical SPDI:: NC_000017.11:34355217:A:C,NC_000017.11:34355217:A:T
Gene:: CCL13 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.34355218A>C, NC_000017.11:g.34355218A>T, NC_000017.10:g.32682237A>C, NC_000017.10:g.32682237A>T

Select item 147781473020.

rs1477814730 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:34357270 (GRCh38)
17:32684289 (GRCh37)
Canonical SPDI:: NC_000017.11:34357269:A:G
Gene:: CCL13 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00003/8 (TOPMED)
G=0.000036/5 (GnomAD)
HGVS:: NC_000017.11:g.34357270A>G, NC_000017.10:g.32684289A>G

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