SNP Links for Gene (Select 63914) - SNP

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Select item 14913698091.

rs1491369809 has merged into rs199750488 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA [Show Flanks]
Chromosome:: 6:87399198 (GRCh38)
6:88108916 (GRCh37)
Canonical SPDI:: NC_000006.12:87399185:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000006.12:87399185:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000006.12:87399185:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000006.12:87399185:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000006.12:87399185:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000006.12:87399185:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000006.12:87399185:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000006.12:87399185:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000006.12:87399185:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000006.12:87399185:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:87399185:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC01590 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAA=0./0 (ALFA)
AA=0.2927/1466 (1000Genomes)
HGVS:: NC_000006.12:g.87399198_87399205del, NC_000006.12:g.87399199_87399205del, NC_000006.12:g.87399200_87399205del, NC_000006.12:g.87399201_87399205del, NC_000006.12:g.87399202_87399205del, NC_000006.12:g.87399203_87399205del, NC_000006.12:g.87399204_87399205del, NC_000006.12:g.87399205del, NC_000006.12:g.87399205dup, NC_000006.12:g.87399204_87399205dup, NC_000006.12:g.87399203_87399205dup, NC_000006.11:g.88108916_88108923del, NC_000006.11:g.88108917_88108923del, NC_000006.11:g.88108918_88108923del, NC_000006.11:g.88108919_88108923del, NC_000006.11:g.88108920_88108923del, NC_000006.11:g.88108921_88108923del, NC_000006.11:g.88108922_88108923del, NC_000006.11:g.88108923del, NC_000006.11:g.88108923dup, NC_000006.11:g.88108922_88108923dup, NC_000006.11:g.88108921_88108923dup

Select item 14912746372.

rs1491274637 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 6:87399185 (GRCh38)
6:88108903 (GRCh37)
Canonical SPDI:: NC_000006.12:87399184:CA:
Gene:: LINC01590 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.01239/147 (ALFA)
HGVS:: NC_000006.12:g.87399185_87399186del, NC_000006.11:g.88108903_88108904del

Select item 14879538723.

rs1487953872 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:87397525 (GRCh38)
6:88107243 (GRCh37)
Canonical SPDI:: NC_000006.12:87397524:T:C
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
HGVS:: NC_000006.12:g.87397525T>C, NC_000006.11:g.88107243T>C, NR_026784.1:n.402T>C

Select item 14879152194.

rs1487915219 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:87395897 (GRCh38)
6:88105615 (GRCh37)
Canonical SPDI:: NC_000006.12:87395896:C:T
Gene:: LINC01590 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000006.12:g.87395897C>T, NC_000006.11:g.88105615C>T

Select item 14874660115.

rs1487466011 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 6:87396124 (GRCh38)
6:88105842 (GRCh37)
Canonical SPDI:: NC_000006.12:87396123:T:G
Gene:: LINC01590 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.87396124T>G, NC_000006.11:g.88105842T>G

Select item 14869457226.

rs1486945722 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 6:87396232 (GRCh38)
6:88105950 (GRCh37)
Canonical SPDI:: NC_000006.12:87396231:A:C
Gene:: LINC01590 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.87396232A>C, NC_000006.11:g.88105950A>C

Select item 14856302267.

rs1485630226 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:87399603 (GRCh38)
6:88109321 (GRCh37)
Canonical SPDI:: NC_000006.12:87399602:G:T
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.87399603G>T, NC_000006.11:g.88109321G>T, NM_022084.2:c.*153G>T, NR_026784.1:n.1420G>T

Select item 14855144388.

rs1485514438 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:87398851 (GRCh38)
6:88108569 (GRCh37)
Canonical SPDI:: NC_000006.12:87398850:G:A
Gene:: LINC01590 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000084/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.87398851G>A, NC_000006.11:g.88108569G>A

Select item 14854028869.

rs1485402886 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:87399936 (GRCh38)
6:88109654 (GRCh37)
Canonical SPDI:: NC_000006.12:87399935:G:A
Gene:: LINC01590 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.87399936G>A, NC_000006.11:g.88109654G>A

Select item 148498643710.

rs1484986437 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:87395184 (GRCh38)
6:88104902 (GRCh37)
Canonical SPDI:: NC_000006.12:87395183:G:C
Gene:: LINC01590 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.87395184G>C, NC_000006.11:g.88104902G>C

Select item 148391065411.

rs1483910654 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:87397935 (GRCh38)
6:88107653 (GRCh37)
Canonical SPDI:: NC_000006.12:87397934:A:G
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000006.12:g.87397935A>G, NC_000006.11:g.88107653A>G, NM_022084.2:c.-280A>G, NR_026784.1:n.812A>G

Select item 148375623812.

rs1483756238 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 6:87399290 (GRCh38)
6:88109008 (GRCh37)
Canonical SPDI:: NC_000006.12:87399289:GGG:GG
Gene:: LINC01590 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.87399292del, NC_000006.11:g.88109010del

Select item 148228733113.

rs1482287331 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:87398247 (GRCh38)
6:88107965 (GRCh37)
Canonical SPDI:: NC_000006.12:87398246:C:A
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.87398247C>A, NC_000006.11:g.88107965C>A, NM_022084.2:c.33C>A, NR_026784.1:n.1124C>A, NM_022084.1:c.33C>A

Select item 148159935814.

rs1481599358 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 6:87396519 (GRCh38)
6:88106237 (GRCh37)
Canonical SPDI:: NC_000006.12:87396518:A:C
Gene:: LINC01590 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.87396519A>C, NC_000006.11:g.88106237A>C

Select item 148053991615.

rs1480539916 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 6:87397024 (GRCh38)
6:88106742 (GRCh37)
Canonical SPDI:: NC_000006.12:87397023:A:C,NC_000006.12:87397023:A:G
Gene:: LINC01590 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000054/1 (ALFA)
C=0.000004/1 (TOPMED)
G=0.000223/1 (Estonian)
HGVS:: NC_000006.12:g.87397024A>C, NC_000006.12:g.87397024A>G, NC_000006.11:g.88106742A>C, NC_000006.11:g.88106742A>G

Select item 147964806316.

rs1479648063 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 6:87395435 (GRCh38)
6:88105153 (GRCh37)
Canonical SPDI:: NC_000006.12:87395434:T:A,NC_000006.12:87395434:T:C
Gene:: LINC01590 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.87395435T>A, NC_000006.12:g.87395435T>C, NC_000006.11:g.88105153T>A, NC_000006.11:g.88105153T>C

Select item 147912335017.

rs1479123350 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:87395138 (GRCh38)
6:88104856 (GRCh37)
Canonical SPDI:: NC_000006.12:87395137:T:C
Gene:: LINC01590 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000006.12:g.87395138T>C, NC_000006.11:g.88104856T>C

Select item 147885917718.

rs1478859177 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTGACGAGAAATTCAGGTG [Show Flanks]
Chromosome:: 6:87398358 (GRCh38)
6:88108077 (GRCh37)
Canonical SPDI:: NC_000006.12:87398358:GTGCTGACGAGAAATTCAGGTG:GTGCTGACGAGAAATTCAGGTGCTGACGAGAAATTCAGGTG
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant,splice_donor_variant,intron_variant
Validated:: by frequency
MAF:: GTGCTGACGAGAAATTCAG=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.87398362_87398380dup, NC_000006.11:g.88108080_88108098dup

Select item 147756832019.

rs1477568320 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:87396921 (GRCh38)
6:88106639 (GRCh37)
Canonical SPDI:: NC_000006.12:87396920:C:T
Gene:: LINC01590 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.87396921C>T, NC_000006.11:g.88106639C>T

Select item 147745917020.

rs1477459170 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:87395616 (GRCh38)
6:88105334 (GRCh37)
Canonical SPDI:: NC_000006.12:87395615:A:G
Gene:: LINC01590 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.87395616A>G, NC_000006.11:g.88105334A>G

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