SNP Links for Gene (Select 642648) - SNP

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Links from Gene

Items: 1 to 20 of 2478

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Select item 14909302911.

rs1490930291 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:46072730 (GRCh38)
22:46468610 (GRCh37)
Canonical SPDI:: NC_000022.11:46072729:G:A
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000022.11:g.46072730G>A, NC_000022.10:g.46468610G>A

Select item 14897397972.

rs1489739797 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:46064711 (GRCh38)
22:46460591 (GRCh37)
Canonical SPDI:: NC_000022.11:46064710:C:T
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000022.11:g.46064711C>T, NC_000022.10:g.46460591C>T, NR_148973.1:n.3544G>A

Select item 14894040593.

rs1489404059 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:46070958 (GRCh38)
22:46466838 (GRCh37)
Canonical SPDI:: NC_000022.11:46070957:T:C
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000022.11:g.46070958T>C, NC_000022.10:g.46466838T>C, NR_148973.1:n.64A>G

Select item 14892443664.

rs1489244366 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:46072122 (GRCh38)
22:46468002 (GRCh37)
Canonical SPDI:: NC_000022.11:46072121:T:C
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000022/3 (GnomAD)
C=0.000026/7 (TOPMED)
C=0.000156/1 (1000Genomes)
C=0.00211/6 (KOREAN)
C=0.003788/63 (TOMMO)
HGVS:: NC_000022.11:g.46072122T>C, NC_000022.10:g.46468002T>C, XM_047441695.1:c.-6081T>C, XM_047441697.1:c.-5513T>C

Select item 14892333925.

rs1489233392 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:46068115 (GRCh38)
22:46463995 (GRCh37)
Canonical SPDI:: NC_000022.11:46068114:T:C
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.46068115T>C, NC_000022.10:g.46463995T>C

Select item 14888221996.

rs1488822199 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 22:46071835 (GRCh38)
22:46467715 (GRCh37)
Canonical SPDI:: NC_000022.11:46071834:C:A,NC_000022.11:46071834:C:T
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000022.11:g.46071835C>A, NC_000022.11:g.46071835C>T, NC_000022.10:g.46467715C>A, NC_000022.10:g.46467715C>T, XM_047441695.1:c.-6368C>A, XM_047441695.1:c.-6368C>T, XM_047441697.1:c.-5800C>A, XM_047441697.1:c.-5800C>T

Select item 14886192957.

rs1488619295 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 22:46070086 (GRCh38)
22:46465966 (GRCh37)
Canonical SPDI:: NC_000022.11:46070085:C:G
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.46070086C>G, NC_000022.10:g.46465966C>G

Select item 14884539368.

rs1488453936 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCACCGTCGGCCCCGAGCGCTG>- [Show Flanks]
Chromosome:: 22:46070805 (GRCh38)
22:46466685 (GRCh37)
Canonical SPDI:: NC_000022.11:46070799:CGCTGCCACCGTCGGCCCCGAGCGCTG:CGCTG
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CGCTG=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.46070805_46070826del, NC_000022.10:g.46466685_46466706del, NR_148973.1:n.201_222del

Select item 14883651609.

rs1488365160 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 22:46070770 (GRCh38)
22:46466650 (GRCh37)
Canonical SPDI:: NC_000022.11:46070769:C:A,NC_000022.11:46070769:C:T
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000022.11:g.46070770C>A, NC_000022.11:g.46070770C>T, NC_000022.10:g.46466650C>A, NC_000022.10:g.46466650C>T, NR_148973.1:n.252G>T, NR_148973.1:n.252G>A

Select item 148825611910.

rs1488256119 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:46067651 (GRCh38)
22:46463531 (GRCh37)
Canonical SPDI:: NC_000022.11:46067650:T:C
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000019/5 (TOPMED)
HGVS:: NC_000022.11:g.46067651T>C, NC_000022.10:g.46463531T>C, NR_148973.1:n.604A>G

Select item 148792454511.

rs1487924545 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:46068347 (GRCh38)
22:46464227 (GRCh37)
Canonical SPDI:: NC_000022.11:46068346:G:A
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.46068347G>A, NC_000022.10:g.46464227G>A

Select item 148739220912.

rs1487392209 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 22:46073095 (GRCh38)
22:46468975 (GRCh37)
Canonical SPDI:: NC_000022.11:46073094:T:
Gene:: LOC124905135 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.46073095del, NC_000022.10:g.46468975del

Select item 148722042513.

rs1487220425 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:46064249 (GRCh38)
22:46460129 (GRCh37)
Canonical SPDI:: NC_000022.11:46064248:C:T
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000022.11:g.46064249C>T, NC_000022.10:g.46460129C>T

Select item 148720705314.

rs1487207053 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:46065369 (GRCh38)
22:46461249 (GRCh37)
Canonical SPDI:: NC_000022.11:46065368:T:C
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.46065369T>C, NC_000022.10:g.46461249T>C, NR_148973.1:n.2886A>G

Select item 148673184015.

rs1486731840 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 22:46070963 (GRCh38)
22:46466843 (GRCh37)
Canonical SPDI:: NC_000022.11:46070962:C:A
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.46070963C>A, NC_000022.10:g.46466843C>A, NR_148973.1:n.59G>T

Select item 148670650016.

rs1486706500 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:46067191 (GRCh38)
22:46463071 (GRCh37)
Canonical SPDI:: NC_000022.11:46067190:G:A
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000022.11:g.46067191G>A, NC_000022.10:g.46463071G>A, NR_148973.1:n.1064C>T

Select item 148666023617.

rs1486660236 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 22:46070301 (GRCh38)
22:46466181 (GRCh37)
Canonical SPDI:: NC_000022.11:46070300:G:A,NC_000022.11:46070300:G:C
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
C=0.002477/70 (TOMMO)
HGVS:: NC_000022.11:g.46070301G>A, NC_000022.11:g.46070301G>C, NC_000022.10:g.46466181G>A, NC_000022.10:g.46466181G>C

Select item 148620678218.

rs1486206782 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:46064324 (GRCh38)
22:46460204 (GRCh37)
Canonical SPDI:: NC_000022.11:46064323:C:T
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000022.11:g.46064324C>T, NC_000022.10:g.46460204C>T

Select item 148613672419.

rs1486136724 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 22:46072217 (GRCh38)
22:46468097 (GRCh37)
Canonical SPDI:: NC_000022.11:46072216:G:A,NC_000022.11:46072216:G:C
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.46072217G>A, NC_000022.11:g.46072217G>C, NC_000022.10:g.46468097G>A, NC_000022.10:g.46468097G>C, XM_047441695.1:c.-5986G>A, XM_047441695.1:c.-5986G>C, XM_047441697.1:c.-5418G>A, XM_047441697.1:c.-5418G>C

Select item 148611029920.

rs1486110299 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 22:46071368 (GRCh38)
22:46467248 (GRCh37)
Canonical SPDI:: NC_000022.11:46071367:C:A,NC_000022.11:46071367:C:T
Gene:: LINC02939 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00011/2 (ALFA)
T=0.00045/2 (Estonian)
HGVS:: NC_000022.11:g.46071368C>A, NC_000022.11:g.46071368C>T, NC_000022.10:g.46467248C>A, NC_000022.10:g.46467248C>T

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