SNP Links for Gene (Select 643770) - SNP

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Items: 1 to 20 of 5010

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Select item 14915605871.

rs1491560587 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 12:98487973 (GRCh38)
12:98881751 (GRCh37)
Canonical SPDI:: NC_000012.12:98487972:CA:
Gene:: LINC02453 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00051/6 (ALFA)
HGVS:: NC_000012.12:g.98487973_98487974del, NC_000012.11:g.98881751_98881752del

Select item 14914784192.

rs1491478419 [Homo sapiens]

Variant type:: INS
Alleles:: ->CCCA,CCCCA,CCCCCA,CCCCCCA,CCCCCCCA [Show Flanks]
Chromosome:: 12:98502840 (GRCh38)
12:98896619 (GRCh37)
Canonical SPDI:: NC_000012.12:98502840::CCCA,NC_000012.12:98502840::CCCCA,NC_000012.12:98502840::CCCCCA,NC_000012.12:98502840::CCCCCCA,NC_000012.12:98502840::CCCCCCCA
Gene:: LINC02453 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCA=0./0 (ALFA)
HGVS:: NC_000012.12:g.98502840_98502841insCCCA, NC_000012.12:g.98502840_98502841insCCCCA, NC_000012.12:g.98502840_98502841insCCCCCA, NC_000012.12:g.98502840_98502841insCCCCCCA, NC_000012.12:g.98502840_98502841insCCCCCCCA, NC_000012.11:g.98896618_98896619insCCCA, NC_000012.11:g.98896618_98896619insCCCCA, NC_000012.11:g.98896618_98896619insCCCCCA, NC_000012.11:g.98896618_98896619insCCCCCCA, NC_000012.11:g.98896618_98896619insCCCCCCCA

Select item 14914489903.

rs1491448990 has merged into rs1555200576 [Homo sapiens]

Variant type:: DELINS
Alleles:: ACACACAC>-,ACAC,ACACAC,ACACACACAC,ACACACACACAC [Show Flanks]
Chromosome:: 12:98502849 (GRCh38)
12:98896627 (GRCh37)
Canonical SPDI:: NC_000012.12:98502839:CACACACACACACACAC:CACACACAC,NC_000012.12:98502839:CACACACACACACACAC:CACACACACACAC,NC_000012.12:98502839:CACACACACACACACAC:CACACACACACACAC,NC_000012.12:98502839:CACACACACACACACAC:CACACACACACACACACAC,NC_000012.12:98502839:CACACACACACACACAC:CACACACACACACACACACAC
Gene:: LINC02453 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CACACACACACACACACAC=0./0 (ALFA)
CA=0.00201/20 (TOMMO)
CA=0.0076/13 (Korea1K)
HGVS:: NC_000012.12:g.98502841AC[4], NC_000012.12:g.98502841AC[6], NC_000012.12:g.98502841AC[7], NC_000012.12:g.98502841AC[9], NC_000012.12:g.98502841AC[10], NC_000012.11:g.98896619AC[4], NC_000012.11:g.98896619AC[6], NC_000012.11:g.98896619AC[7], NC_000012.11:g.98896619AC[9], NC_000012.11:g.98896619AC[10]

Select item 14914415864.

rs1491441586 has merged into rs34178925 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAA>-,A,AA,AAA,AAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 12:98486791 (GRCh38)
12:98880569 (GRCh37)
Canonical SPDI:: NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:98486779:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC02453 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
AAAAAAA=0.075/3 (GENOME_DK)
HGVS:: NC_000012.12:g.98486791_98486802del, NC_000012.12:g.98486792_98486802del, NC_000012.12:g.98486793_98486802del, NC_000012.12:g.98486794_98486802del, NC_000012.12:g.98486796_98486802del, NC_000012.12:g.98486800_98486802del, NC_000012.12:g.98486801_98486802del, NC_000012.12:g.98486802del, NC_000012.12:g.98486802dup, NC_000012.12:g.98486801_98486802dup, NC_000012.12:g.98486800_98486802dup, NC_000012.12:g.98486799_98486802dup, NC_000012.12:g.98486797_98486802dup, NC_000012.12:g.98486796_98486802dup, NC_000012.12:g.98486795_98486802dup, NC_000012.12:g.98486791_98486802dup, NC_000012.12:g.98486790_98486802dup, NC_000012.12:g.98486789_98486802dup, NC_000012.12:g.98486782_98486802dup, NC_000012.12:g.98486802_98486803insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000012.11:g.98880569_98880580del, NC_000012.11:g.98880570_98880580del, NC_000012.11:g.98880571_98880580del, NC_000012.11:g.98880572_98880580del, NC_000012.11:g.98880574_98880580del, NC_000012.11:g.98880578_98880580del, NC_000012.11:g.98880579_98880580del, NC_000012.11:g.98880580del, NC_000012.11:g.98880580dup, NC_000012.11:g.98880579_98880580dup, NC_000012.11:g.98880578_98880580dup, NC_000012.11:g.98880577_98880580dup, NC_000012.11:g.98880575_98880580dup, NC_000012.11:g.98880574_98880580dup, NC_000012.11:g.98880573_98880580dup, NC_000012.11:g.98880569_98880580dup, NC_000012.11:g.98880568_98880580dup, NC_000012.11:g.98880567_98880580dup, NC_000012.11:g.98880560_98880580dup, NC_000012.11:g.98880580_98880581insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NR_038383.1:n.578_589del, NR_038383.1:n.579_589del, NR_038383.1:n.580_589del, NR_038383.1:n.581_589del, NR_038383.1:n.583_589del, NR_038383.1:n.587_589del, NR_038383.1:n.588_589del, NR_038383.1:n.589del, NR_038383.1:n.589dup, NR_038383.1:n.588_589dup, NR_038383.1:n.587_589dup, NR_038383.1:n.586_589dup, NR_038383.1:n.584_589dup, NR_038383.1:n.583_589dup, NR_038383.1:n.582_589dup, NR_038383.1:n.578_589dup, NR_038383.1:n.577_589dup, NR_038383.1:n.576_589dup, NR_038383.1:n.569_589dup, NR_038383.1:n.589_590insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Select item 14911553195.

rs1491155319 has merged into rs10558962 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAA>-,A,AA,AAA,AAAA,AAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 12:98487986 (GRCh38)
12:98881764 (GRCh37)
Canonical SPDI:: NC_000012.12:98487973:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000012.12:98487973:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000012.12:98487973:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000012.12:98487973:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000012.12:98487973:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000012.12:98487973:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000012.12:98487973:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:98487973:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC02453 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000012.12:g.98487986_98487990del, NC_000012.12:g.98487987_98487990del, NC_000012.12:g.98487988_98487990del, NC_000012.12:g.98487989_98487990del, NC_000012.12:g.98487990del, NC_000012.12:g.98487990dup, NC_000012.12:g.98487984_98487990dup, NC_000012.12:g.98487982_98487990dup, NC_000012.11:g.98881764_98881768del, NC_000012.11:g.98881765_98881768del, NC_000012.11:g.98881766_98881768del, NC_000012.11:g.98881767_98881768del, NC_000012.11:g.98881768del, NC_000012.11:g.98881768dup, NC_000012.11:g.98881762_98881768dup, NC_000012.11:g.98881760_98881768dup

Select item 14910909796.

rs1491090979 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 12:98486779 (GRCh38)
12:98880557 (GRCh37)
Canonical SPDI:: NC_000012.12:98486778:CA:
Gene:: LINC02453 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0.00118/14 (ALFA)
-=0.00138/39 (TOMMO)
HGVS:: NC_000012.12:g.98486779_98486780del, NC_000012.11:g.98880557_98880558del, NR_038383.1:n.589_590del

Select item 14910455647.

rs1491045564 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTT [Show Flanks]
Chromosome:: 12:98491686 (GRCh38)
12:98885465 (GRCh37)
Canonical SPDI:: NC_000012.12:98491686:TT:TTCTT
Gene:: LINC02453 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TTCTT=0./0 (ALFA)
TTC=0.0001/3 (GnomAD)
HGVS:: NC_000012.12:g.98491688_98491689insCTT, NC_000012.11:g.98885466_98885467insCTT

Select item 14909607928.

rs1490960792 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:98500878 (GRCh38)
12:98894656 (GRCh37)
Canonical SPDI:: NC_000012.12:98500877:A:G
Gene:: LINC02453 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.98500878A>G, NC_000012.11:g.98894656A>G

Select item 14908921099.

rs1490892109 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 12:98499709 (GRCh38)
12:98893487 (GRCh37)
Canonical SPDI:: NC_000012.12:98499708:C:G,NC_000012.12:98499708:C:T
Gene:: LINC02453 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000012.12:g.98499709C>G, NC_000012.12:g.98499709C>T, NC_000012.11:g.98893487C>G, NC_000012.11:g.98893487C>T

Select item 149077631510.

rs1490776315 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CCTG [Show Flanks]
Chromosome:: 12:98491896 (GRCh38)
12:98885675 (GRCh37)
Canonical SPDI:: NC_000012.12:98491896:GCCTG:GCCTGCCTG
Gene:: LINC02453 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCCTGCCTG=0./0 (ALFA)
GCCT=0.000011/3 (TOPMED)
GCCT=0.000021/3 (GnomAD)
HGVS:: NC_000012.12:g.98491898_98491901dup, NC_000012.11:g.98885676_98885679dup

Select item 149064549211.

rs1490645492 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 12:98492391 (GRCh38)
12:98886169 (GRCh37)
Canonical SPDI:: NC_000012.12:98492390:A:C
Gene:: LINC02453 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.98492391A>C, NC_000012.11:g.98886169A>C

Select item 149046228412.

rs1490462284 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 12:98495266 (GRCh38)
12:98889044 (GRCh37)
Canonical SPDI:: NC_000012.12:98495265:G:
Gene:: LINC02453 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000015/4 (TOPMED)
HGVS:: NC_000012.12:g.98495266del, NC_000012.11:g.98889044del

Select item 149042256413.

rs1490422564 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 12:98505583 (GRCh38)
12:98899361 (GRCh37)
Canonical SPDI:: NC_000012.12:98505582:G:C
Gene:: LINC02453 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000012.12:g.98505583G>C, NC_000012.11:g.98899361G>C

Select item 149013287114.

rs1490132871 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 12:98497309 (GRCh38)
12:98891087 (GRCh37)
Canonical SPDI:: NC_000012.12:98497306:CTCT:CT
Gene:: LINC02453 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTCT=0./0 (ALFA)
-=0.000021/3 (GnomAD)
-=0.000026/7 (TOPMED)
HGVS:: NC_000012.12:g.98497307CT[1], NC_000012.11:g.98891085CT[1]

Select item 149003081815.

rs1490030818 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:98498235 (GRCh38)
12:98892013 (GRCh37)
Canonical SPDI:: NC_000012.12:98498234:C:T
Gene:: LINC02453 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.98498235C>T, NC_000012.11:g.98892013C>T

Select item 148997116316.

rs1489971163 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:98496323 (GRCh38)
12:98890101 (GRCh37)
Canonical SPDI:: NC_000012.12:98496322:A:G
Gene:: LINC02453 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.98496323A>G, NC_000012.11:g.98890101A>G

Select item 148991957117.

rs1489919571 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:98498829 (GRCh38)
12:98892607 (GRCh37)
Canonical SPDI:: NC_000012.12:98498828:T:C
Gene:: LINC02453 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.98498829T>C, NC_000012.11:g.98892607T>C

Select item 148984515718.

rs1489845157 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 12:98503914 (GRCh38)
12:98897692 (GRCh37)
Canonical SPDI:: NC_000012.12:98503913:G:A,NC_000012.12:98503913:G:C
Gene:: LINC02453 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.98503914G>A, NC_000012.12:g.98503914G>C, NC_000012.11:g.98897692G>A, NC_000012.11:g.98897692G>C

Select item 148981182919.

rs1489811829 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 12:98490092 (GRCh38)
12:98883871 (GRCh37)
Canonical SPDI:: NC_000012.12:98490092:TTTTTT:TTTTTTT
Gene:: LINC02453 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTT=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000026/7 (TOPMED)
T=0.000312/2 (1000Genomes)
HGVS:: NC_000012.12:g.98490098dup, NC_000012.11:g.98883876dup

Select item 148979613320.

rs1489796133 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:98491213 (GRCh38)
12:98884991 (GRCh37)
Canonical SPDI:: NC_000012.12:98491212:A:G
Gene:: LINC02453 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.98491213A>G, NC_000012.11:g.98884991A>G

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