SNP Links for Gene (Select 643834) - SNP

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Links from Gene

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Select item 14909896111.

rs1490989611 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:61205171 (GRCh38)
11:60972643 (GRCh37)
Canonical SPDI:: NC_000011.10:61205170:C:T
Gene:: PGA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.61205171C>T, NC_000011.9:g.60972643C>T

Select item 14907085282.

rs1490708528 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 11:61205056 (GRCh38)
11:60972528 (GRCh37)
Canonical SPDI:: NC_000011.10:61205055:G:A,NC_000011.10:61205055:G:C
Gene:: PGA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00018/3 (ALFA)
A=0.000004/1 (TOPMED)
C=0.000442/62 (GnomAD)
HGVS:: NC_000011.10:g.61205056G>A, NC_000011.10:g.61205056G>C, NC_000011.9:g.60972528G>A, NC_000011.9:g.60972528G>C

Select item 14904069133.

rs1490406913 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:61207603 (GRCh38)
11:60975075 (GRCh37)
Canonical SPDI:: NC_000011.10:61207602:C:T
Gene:: PGA3 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00028/26 (GnomAD)
HGVS:: NC_000011.10:g.61207603C>T, NC_000011.9:g.60975075C>T, NM_001079807.4:c.444C>T, NM_001079807.3:c.444C>T, NM_001079807.2:c.444C>T, NM_001079807.1:c.444C>T

Select item 14902439934.

rs1490243993 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:61204060 (GRCh38)
11:60971532 (GRCh37)
Canonical SPDI:: NC_000011.10:61204059:G:A
Gene:: PGA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00008/1 (ALFA)
A=0.00003/1 (GnomAD_exomes)
A=0.00006/5 (GnomAD)
A=0.00007/1 (TOMMO)
HGVS:: NC_000011.10:g.61204060G>A, NC_000011.9:g.60971532G>A

Select item 14898448355.

rs1489844835 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:61205517 (GRCh38)
11:60972989 (GRCh37)
Canonical SPDI:: NC_000011.10:61205516:C:T
Gene:: PGA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000084/1 (ALFA)
T=0.000036/5 (GnomAD)
T=0.000142/2 (TOMMO)
T=0.000156/1 (1000Genomes)
T=0.000684/2 (KOREAN)
T=0.001092/2 (Korea1K)
HGVS:: NC_000011.10:g.61205517C>T, NC_000011.9:g.60972989C>T

Select item 14897936016.

rs1489793601 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:61206145 (GRCh38)
11:60973617 (GRCh37)
Canonical SPDI:: NC_000011.10:61206144:G:A
Gene:: PGA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.00003/3 (GnomAD)
HGVS:: NC_000011.10:g.61206145G>A, NC_000011.9:g.60973617G>A

Select item 14897264897.

rs1489726489 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:61202215 (GRCh38)
11:60969687 (GRCh37)
Canonical SPDI:: NC_000011.10:61202214:C:T
Gene:: PGA3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000224/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000011.10:g.61202215C>T, NC_000011.9:g.60969687C>T

Select item 14896735848.

rs1489673584 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:61203511 (GRCh38)
11:60970983 (GRCh37)
Canonical SPDI:: NC_000011.10:61203510:C:G
Gene:: PGA3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.61203511C>G, NC_000011.9:g.60970983C>G, NM_001079807.2:c.-54C>G

Select item 14896197229.

rs1489619722 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:61207309 (GRCh38)
11:60974781 (GRCh37)
Canonical SPDI:: NC_000011.10:61207308:A:G
Gene:: PGA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/1 (GnomAD)
HGVS:: NC_000011.10:g.61207309A>G, NC_000011.9:g.60974781A>G

Select item 148955842310.

rs1489558423 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 11:61211492 (GRCh38)
11:60978964 (GRCh37)
Canonical SPDI:: NC_000011.10:61211491:TT:T
Gene:: PGA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0.000084/1 (ALFA)
-=0.000015/2 (GnomAD)
-=0.000142/2 (TOMMO)
HGVS:: NC_000011.10:g.61211493del, NC_000011.9:g.60978965del

Select item 148902657311.

rs1489026573 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 11:61211627 (GRCh38)
11:60979100 (GRCh37)
Canonical SPDI:: NC_000011.10:61211627:CCCCC:CCCCCC
Gene:: PGA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CCCCCC=0./0 (ALFA)
HGVS:: NC_000011.10:g.61211632dup, NC_000011.9:g.60979104dup

Select item 148882481012.

rs1488824810 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:61202957 (GRCh38)
11:60970429 (GRCh37)
Canonical SPDI:: NC_000011.10:61202956:C:G
Gene:: PGA3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000337/4 (ALFA)
G=0.000064/9 (GnomAD)
G=0.000071/1 (TOMMO)
G=0.000312/2 (1000Genomes)
G=0.000342/1 (KOREAN)
HGVS:: NC_000011.10:g.61202957C>G, NC_000011.9:g.60970429C>G

Select item 148876090113.

rs1488760901 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:61201573 (GRCh38)
11:60969045 (GRCh37)
Canonical SPDI:: NC_000011.10:61201572:T:G
Gene:: PGA3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000011.10:g.61201573T>G, NC_000011.9:g.60969045T>G

Select item 148857418214.

rs1488574182 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:61212415 (GRCh38)
11:60979887 (GRCh37)
Canonical SPDI:: NC_000011.10:61212414:G:A
Gene:: PGA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00042/5 (ALFA)
A=0.00021/3 (TOMMO)
A=0.00221/4 (KOREAN)
HGVS:: NC_000011.10:g.61212415G>A, NC_000011.9:g.60979887G>A

Select item 148850357415.

rs1488503574 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:61204472 (GRCh38)
11:60971944 (GRCh37)
Canonical SPDI:: NC_000011.10:61204471:C:T
Gene:: PGA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000084/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.61204472C>T, NC_000011.9:g.60971944C>T

Select item 148836099416.

rs1488360994 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:61207190 (GRCh38)
11:60974662 (GRCh37)
Canonical SPDI:: NC_000011.10:61207189:G:A
Gene:: PGA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00008/1 (ALFA)
A=0.00031/2 (1000Genomes)
A=0.00039/39 (GnomAD)
HGVS:: NC_000011.10:g.61207190G>A, NC_000011.9:g.60974662G>A

Select item 148817122217.

rs1488171222 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:61211283 (GRCh38)
11:60978755 (GRCh37)
Canonical SPDI:: NC_000011.10:61211282:C:T
Gene:: PGA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.61211283C>T, NC_000011.9:g.60978755C>T

Select item 148810791618.

rs1488107916 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 11:61202293 (GRCh38)
11:60969765 (GRCh37)
Canonical SPDI:: NC_000011.10:61202292:T:A,NC_000011.10:61202292:T:G
Gene:: PGA3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00003/8 (TOPMED)
HGVS:: NC_000011.10:g.61202293T>A, NC_000011.10:g.61202293T>G, NC_000011.9:g.60969765T>A, NC_000011.9:g.60969765T>G

Select item 148807257519.

rs1488072575 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:61204953 (GRCh38)
11:60972425 (GRCh37)
Canonical SPDI:: NC_000011.10:61204952:T:C
Gene:: PGA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000169/2 (ALFA)
C=0.000064/9 (GnomAD)
C=0.000389/7 (TOMMO)
C=0.000625/4 (1000Genomes)
C=0.001092/2 (Korea1K)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000011.10:g.61204953T>C, NC_000011.9:g.60972425T>C

Select item 148785757420.

rs1487857574 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:61205071 (GRCh38)
11:60972543 (GRCh37)
Canonical SPDI:: NC_000011.10:61205070:C:G,NC_000011.10:61205070:C:T
Gene:: PGA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.61205071C>G, NC_000011.10:g.61205071C>T, NC_000011.9:g.60972543C>G, NC_000011.9:g.60972543C>T