SNP Links for Gene (Select 644961) - SNP

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Links from Gene

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Select item 14901155801.

rs1490115580 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:27322000 (GRCh38)
1:27648491 (GRCh37)
Canonical SPDI:: NC_000001.11:27321999:T:C
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.27322000T>C, NC_000001.10:g.27648491T>C

Select item 14895635262.

rs1489563526 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:27325239 (GRCh38)
1:27651730 (GRCh37)
Canonical SPDI:: NC_000001.11:27325238:T:G
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.27325239T>G, NC_000001.10:g.27651730T>G, NG_044423.2:g.121T>G, NR_033926.1:n.1366T>G

Select item 14895181693.

rs1489518169 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:27326440 (GRCh38)
1:27652931 (GRCh37)
Canonical SPDI:: NC_000001.11:27326439:G:A
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000001.11:g.27326440G>A, NC_000001.10:g.27652931G>A, NR_033926.1:n.2567G>A

Select item 14891649394.

rs1489164939 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:27322480 (GRCh38)
1:27648971 (GRCh37)
Canonical SPDI:: NC_000001.11:27322479:G:A
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
HGVS:: NC_000001.11:g.27322480G>A, NC_000001.10:g.27648971G>A

Select item 14888389175.

rs1488838917 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:27323200 (GRCh38)
1:27649691 (GRCh37)
Canonical SPDI:: NC_000001.11:27323199:A:G
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.27323200A>G, NC_000001.10:g.27649691A>G

Select item 14887701526.

rs1488770152 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:27325440 (GRCh38)
1:27651931 (GRCh37)
Canonical SPDI:: NC_000001.11:27325439:C:G,NC_000001.11:27325439:C:T
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.27325440C>G, NC_000001.11:g.27325440C>T, NC_000001.10:g.27651931C>G, NC_000001.10:g.27651931C>T, NR_033926.1:n.1567C>G, NR_033926.1:n.1567C>T

Select item 14881914777.

rs1488191477 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:27324109 (GRCh38)
1:27650600 (GRCh37)
Canonical SPDI:: NC_000001.11:27324108:T:G
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.27324109T>G, NC_000001.10:g.27650600T>G, NR_033926.1:n.236T>G

Select item 14878250298.

rs1487825029 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:27325370 (GRCh38)
1:27651861 (GRCh37)
Canonical SPDI:: NC_000001.11:27325369:C:T
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.27325370C>T, NC_000001.10:g.27651861C>T, NG_044423.2:g.252C>T, NR_033926.1:n.1497C>T

Select item 14872023039.

rs1487202303 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:27323590 (GRCh38)
1:27650081 (GRCh37)
Canonical SPDI:: NC_000001.11:27323589:G:A
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.27323590G>A, NC_000001.10:g.27650081G>A

Select item 148491812110.

rs1484918121 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 1:27325071 (GRCh38)
1:27651562 (GRCh37)
Canonical SPDI:: NC_000001.11:27325070:T:A,NC_000001.11:27325070:T:C
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.27325071T>A, NC_000001.11:g.27325071T>C, NC_000001.10:g.27651562T>A, NC_000001.10:g.27651562T>C, NR_033926.1:n.1198T>A, NR_033926.1:n.1198T>C

Select item 148456010911.

rs1484560109 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:27325582 (GRCh38)
1:27652073 (GRCh37)
Canonical SPDI:: NC_000001.11:27325581:T:C
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000054/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.27325582T>C, NC_000001.10:g.27652073T>C, NR_033926.1:n.1709T>C

Select item 148422254612.

rs1484222546 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:27325593 (GRCh38)
1:27652084 (GRCh37)
Canonical SPDI:: NC_000001.11:27325592:A:G
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000072/19 (TOPMED)
G=0.000078/11 (GnomAD)
HGVS:: NC_000001.11:g.27325593A>G, NC_000001.10:g.27652084A>G, NR_033926.1:n.1720A>G

Select item 148357782413.

rs1483577824 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:27322150 (GRCh38)
1:27648641 (GRCh37)
Canonical SPDI:: NC_000001.11:27322149:G:A
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000094/1 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.27322150G>A, NC_000001.10:g.27648641G>A, NM_032125.2:c.-48G>A, NR_037580.1:n.6G>A, NR_037576.1:n.6G>A, NR_037577.1:n.6G>A

Select item 148334897814.

rs1483348978 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:27326236 (GRCh38)
1:27652727 (GRCh37)
Canonical SPDI:: NC_000001.11:27326235:G:A
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000001.11:g.27326236G>A, NC_000001.10:g.27652727G>A, NR_033926.1:n.2363G>A

Select item 148247215515.

rs1482472155 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:27323966 (GRCh38)
1:27650457 (GRCh37)
Canonical SPDI:: NC_000001.11:27323965:A:G
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.27323966A>G, NC_000001.10:g.27650457A>G, NR_033926.1:n.93A>G

Select item 148003880716.

rs1480038807 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 1:27322703 (GRCh38)
1:27649194 (GRCh37)
Canonical SPDI:: NC_000001.11:27322702:C:A,NC_000001.11:27322702:C:G
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.27322703C>A, NC_000001.11:g.27322703C>G, NC_000001.10:g.27649194C>A, NC_000001.10:g.27649194C>G

Select item 147899971417.

rs1478999714 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:27324062 (GRCh38)
1:27650553 (GRCh37)
Canonical SPDI:: NC_000001.11:27324061:A:C
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.27324062A>C, NC_000001.10:g.27650553A>C, NR_033926.1:n.189A>C

Select item 147865472918.

rs1478654729 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:27326476 (GRCh38)
1:27652967 (GRCh37)
Canonical SPDI:: NC_000001.11:27326475:C:T
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.27326476C>T, NC_000001.10:g.27652967C>T, NR_033926.1:n.2603C>T

Select item 147779349019.

rs1477793490 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGA>- [Show Flanks]
Chromosome:: 1:27324575 (GRCh38)
1:27651066 (GRCh37)
Canonical SPDI:: NC_000001.11:27324573:AAGA:A
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000001.11:g.27324575_27324577del, NC_000001.10:g.27651066_27651068del, NR_033926.1:n.702_704del

Select item 147775319220.

rs1477753192 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:27324026 (GRCh38)
1:27650517 (GRCh37)
Canonical SPDI:: NC_000001.11:27324025:T:C
Gene:: TMEM222 (Varview), ACTG1P20 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.27324026T>C, NC_000001.10:g.27650517T>C, NR_033926.1:n.153T>C