SNP Links for Gene (Select 647012) - SNP

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Select item 14905136001.

rs1490513600 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 2:138898081 (GRCh38)
2:139655651 (GRCh37)
Canonical SPDI:: NC_000002.12:138898080:T:A
Gene:: YY1P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000086/12 (GnomAD)
A=0.000094/25 (TOPMED)
HGVS:: NC_000002.12:g.138898081T>A, NC_000002.11:g.139655651T>A, NR_033658.1:n.758T>A

Select item 14904603052.

rs1490460305 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:138896060 (GRCh38)
2:139653630 (GRCh37)
Canonical SPDI:: NC_000002.12:138896059:C:T
Gene:: YY1P2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000002.12:g.138896060C>T, NC_000002.11:g.139653630C>T

Select item 14900241453.

rs1490024145 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 2:138895964 (GRCh38)
2:139653534 (GRCh37)
Canonical SPDI:: NC_000002.12:138895963:G:A,NC_000002.12:138895963:G:C,NC_000002.12:138895963:G:T
Gene:: YY1P2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.138895964G>A, NC_000002.12:g.138895964G>C, NC_000002.12:g.138895964G>T, NC_000002.11:g.139653534G>A, NC_000002.11:g.139653534G>C, NC_000002.11:g.139653534G>T

Select item 14892758064.

rs1489275806 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 2:138895557 (GRCh38)
2:139653127 (GRCh37)
Canonical SPDI:: NC_000002.12:138895556:T:
Gene:: YY1P2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000019/5 (TOPMED)
HGVS:: NC_000002.12:g.138895557del, NC_000002.11:g.139653127del

Select item 14882051975.

rs1488205197 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:138899598 (GRCh38)
2:139657168 (GRCh37)
Canonical SPDI:: NC_000002.12:138899597:A:G
Gene:: YY1P2 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.138899598A>G, NC_000002.11:g.139657168A>G

Select item 14876327136.

rs1487632713 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:138899377 (GRCh38)
2:139656947 (GRCh37)
Canonical SPDI:: NC_000002.12:138899376:A:G
Gene:: YY1P2 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.138899377A>G, NC_000002.11:g.139656947A>G

Select item 14875308807.

rs1487530880 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:138897252 (GRCh38)
2:139654822 (GRCh37)
Canonical SPDI:: NC_000002.12:138897251:C:T
Gene:: YY1P2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.000084/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.138897252C>T, NC_000002.11:g.139654822C>T

Select item 14847047698.

rs1484704769 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:138896098 (GRCh38)
2:139653668 (GRCh37)
Canonical SPDI:: NC_000002.12:138896097:G:A
Gene:: YY1P2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.138896098G>A, NC_000002.11:g.139653668G>A

Select item 14845025409.

rs1484502540 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:138898134 (GRCh38)
2:139655704 (GRCh37)
Canonical SPDI:: NC_000002.12:138898133:G:C
Gene:: YY1P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.138898134G>C, NC_000002.11:g.139655704G>C, NR_033658.1:n.811G>C

Select item 148431131410.

rs1484311314 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ATT [Show Flanks]
Chromosome:: 2:138899052 (GRCh38)
2:139656623 (GRCh37)
Canonical SPDI:: NC_000002.12:138899052:TTATT:TTATTATT
Gene:: YY1P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTATTATT=0./0 (ALFA)
TTA=0.000004/1 (TOPMED)
TTA=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.138899055_138899057dup, NC_000002.11:g.139656625_139656627dup, NR_033658.1:n.1732_1734dup

Select item 148378857911.

rs1483788579 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 2:138897784 (GRCh38)
2:139655354 (GRCh37)
Canonical SPDI:: NC_000002.12:138897783:C:G,NC_000002.12:138897783:C:T
Gene:: YY1P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000002.12:g.138897784C>G, NC_000002.12:g.138897784C>T, NC_000002.11:g.139655354C>G, NC_000002.11:g.139655354C>T, NR_033658.1:n.461C>G, NR_033658.1:n.461C>T

Select item 148280685712.

rs1482806857 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 2:138897352 (GRCh38)
2:139654922 (GRCh37)
Canonical SPDI:: NC_000002.12:138897351:C:A
Gene:: YY1P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.138897352C>A, NC_000002.11:g.139654922C>A, NR_033658.1:n.29C>A

Select item 148275986313.

rs1482759863 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:138899080 (GRCh38)
2:139656650 (GRCh37)
Canonical SPDI:: NC_000002.12:138899079:A:G
Gene:: YY1P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00001/1 (GnomAD)
HGVS:: NC_000002.12:g.138899080A>G, NC_000002.11:g.139656650A>G, NR_033658.1:n.1757A>G

Select item 148155721214.

rs1481557212 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:138896380 (GRCh38)
2:139653950 (GRCh37)
Canonical SPDI:: NC_000002.12:138896379:T:C
Gene:: YY1P2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.138896380T>C, NC_000002.11:g.139653950T>C

Select item 148145645315.

rs1481456453 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 2:138895863 (GRCh38)
2:139653433 (GRCh37)
Canonical SPDI:: NC_000002.12:138895862:A:T
Gene:: YY1P2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.138895863A>T, NC_000002.11:g.139653433A>T

Select item 148070758416.

rs1480707584 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:138895818 (GRCh38)
2:139653388 (GRCh37)
Canonical SPDI:: NC_000002.12:138895817:C:T
Gene:: YY1P2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by cluster
MAF:: T=0.000007/1 (GnomAD)
T=0.000035/1 (TOMMO)
HGVS:: NC_000002.12:g.138895818C>T, NC_000002.11:g.139653388C>T

Select item 148057881517.

rs1480578815 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 2:138896355 (GRCh38)
2:139653925 (GRCh37)
Canonical SPDI:: NC_000002.12:138896354:G:T
Gene:: YY1P2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.138896355G>T, NC_000002.11:g.139653925G>T

Select item 147956212318.

rs1479562123 [Homo sapiens]

Variant type:: DELINS
Alleles:: GCTAT>- [Show Flanks]
Chromosome:: 2:138899156 (GRCh38)
2:139656726 (GRCh37)
Canonical SPDI:: NC_000002.12:138899154:TGCTAT:T
Gene:: YY1P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.138899156_138899160del, NC_000002.11:g.139656726_139656730del, NR_033658.1:n.1833_1837del

Select item 147812764219.

rs1478127642 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:138898926 (GRCh38)
2:139656496 (GRCh37)
Canonical SPDI:: NC_000002.12:138898925:A:G
Gene:: YY1P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.138898926A>G, NC_000002.11:g.139656496A>G, NR_033658.1:n.1603A>G

Select item 147717495620.

rs1477174956 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:138898582 (GRCh38)
2:139656152 (GRCh37)
Canonical SPDI:: NC_000002.12:138898581:T:C
Gene:: YY1P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.138898582T>C, NC_000002.11:g.139656152T>C, NR_033658.1:n.1259T>C

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