SNP Links for Gene (Select 647288) - SNP

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Select item 14912706991.

rs1491270699 has merged into rs1482003579 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 13:75237456 (GRCh38)
13:75811592 (GRCh37)
Canonical SPDI:: NC_000013.11:75237452:AGAGA:AGA
Gene:: CTAGE11P (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGA=0./0 (ALFA)
-=0.000034/9 (TOPMED)
HGVS:: NC_000013.11:g.75237454GA[1], NC_000013.10:g.75811590GA[1]

Select item 14909238632.

rs1490923863 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 13:75241408 (GRCh38)
13:75815544 (GRCh37)
Canonical SPDI:: NC_000013.11:75241407:T:C,NC_000013.11:75241407:T:G
Gene:: CTAGE11P (Varview), LINC01078 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
C=0.000035/1 (TOMMO)
HGVS:: NC_000013.11:g.75241408T>C, NC_000013.11:g.75241408T>G, NC_000013.10:g.75815544T>C, NC_000013.10:g.75815544T>G

Select item 14904362943.

rs1490436294 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 13:75241761 (GRCh38)
13:75815897 (GRCh37)
Canonical SPDI:: NC_000013.11:75241760:G:A,NC_000013.11:75241760:G:T
Gene:: CTAGE11P (Varview), LINC01078 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000013.11:g.75241761G>A, NC_000013.11:g.75241761G>T, NC_000013.10:g.75815897G>A, NC_000013.10:g.75815897G>T

Select item 14892374844.

rs1489237484 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 13:75238540 (GRCh38)
13:75812676 (GRCh37)
Canonical SPDI:: NC_000013.11:75238539:C:A
Gene:: CTAGE11P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.75238540C>A, NC_000013.10:g.75812676C>A, NR_027466.1:n.1842G>T

Select item 14887840625.

rs1488784062 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:75240868 (GRCh38)
13:75815004 (GRCh37)
Canonical SPDI:: NC_000013.11:75240867:A:G
Gene:: CTAGE11P (Varview), LINC01078 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.75240868A>G, NC_000013.10:g.75815004A>G

Select item 14885303406.

rs1488530340 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:75239445 (GRCh38)
13:75813581 (GRCh37)
Canonical SPDI:: NC_000013.11:75239444:C:T
Gene:: CTAGE11P (Varview), LINC01078 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.75239445C>T, NC_000013.10:g.75813581C>T, NR_027466.1:n.937G>A

Select item 14885224517.

rs1488522451 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:75240193 (GRCh38)
13:75814329 (GRCh37)
Canonical SPDI:: NC_000013.11:75240192:C:T
Gene:: CTAGE11P (Varview), LINC01078 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.0001/1 (ALFA)
HGVS:: NC_000013.11:g.75240193C>T, NC_000013.10:g.75814329C>T, NR_027466.1:n.189G>A

Select item 14866622088.

rs1486662208 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:75242172 (GRCh38)
13:75816308 (GRCh37)
Canonical SPDI:: NC_000013.11:75242171:G:A
Gene:: CTAGE11P (Varview), LINC01078 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000214/3 (ALFA)
A=0.000035/1 (TOMMO)
A=0.000042/11 (TOPMED)
A=0.000079/11 (GnomAD)
A=0.000156/1 (1000Genomes)
A=0.000546/1 (Korea1K)
HGVS:: NC_000013.11:g.75242172G>A, NC_000013.10:g.75816308G>A

Select item 14866343319.

rs1486634331 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 13:75237617 (GRCh38)
13:75811753 (GRCh37)
Canonical SPDI:: NC_000013.11:75237616:C:G
Gene:: CTAGE11P (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.75237617C>G, NC_000013.10:g.75811753C>G

Select item 148660228210.

rs1486602282 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:75238711 (GRCh38)
13:75812847 (GRCh37)
Canonical SPDI:: NC_000013.11:75238710:G:C
Gene:: CTAGE11P (Varview), LINC01078 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.75238711G>C, NC_000013.10:g.75812847G>C, NR_027466.1:n.1671C>G

Select item 148596146111.

rs1485961461 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:75240603 (GRCh38)
13:75814739 (GRCh37)
Canonical SPDI:: NC_000013.11:75240602:T:C
Gene:: CTAGE11P (Varview), LINC01078 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000528/8 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000057/8 (GnomAD)
HGVS:: NC_000013.11:g.75240603T>C, NC_000013.10:g.75814739T>C, NR_132375.1:n.16T>C

Select item 148593121312.

rs1485931213 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 13:75238260 (GRCh38)
13:75812396 (GRCh37)
Canonical SPDI:: NC_000013.11:75238259:G:C,NC_000013.11:75238259:G:T
Gene:: CTAGE11P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000013.11:g.75238260G>C, NC_000013.11:g.75238260G>T, NC_000013.10:g.75812396G>C, NC_000013.10:g.75812396G>T, NR_027466.1:n.2122C>G, NR_027466.1:n.2122C>A

Select item 148565452313.

rs1485654523 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:75238093 (GRCh38)
13:75812229 (GRCh37)
Canonical SPDI:: NC_000013.11:75238092:G:A
Gene:: CTAGE11P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000013.11:g.75238093G>A, NC_000013.10:g.75812229G>A, NR_027466.1:n.2289C>T

Select item 148526794614.

rs1485267946 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:75238488 (GRCh38)
13:75812624 (GRCh37)
Canonical SPDI:: NC_000013.11:75238487:G:A
Gene:: CTAGE11P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.75238488G>A, NC_000013.10:g.75812624G>A, NR_027466.1:n.1894C>T

Select item 148464557715.

rs1484645577 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 13:75239684 (GRCh38)
13:75813820 (GRCh37)
Canonical SPDI:: NC_000013.11:75239683:C:A
Gene:: CTAGE11P (Varview), LINC01078 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.75239684C>A, NC_000013.10:g.75813820C>A, NR_027466.1:n.698G>T

Select item 148369081716.

rs1483690817 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 13:75240537 (GRCh38)
13:75814674 (GRCh37)
Canonical SPDI:: NC_000013.11:75240537:CCC:CCCC
Gene:: CTAGE11P (Varview), LINC01078 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCC=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000013.11:g.75240540dup, NC_000013.10:g.75814676dup

Select item 148331493617.

rs1483314936 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:75241995 (GRCh38)
13:75816131 (GRCh37)
Canonical SPDI:: NC_000013.11:75241994:G:A
Gene:: CTAGE11P (Varview), LINC01078 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000038/10 (TOPMED)
A=0.000043/6 (GnomAD)
HGVS:: NC_000013.11:g.75241995G>A, NC_000013.10:g.75816131G>A

Select item 148200357918.

rs1482003579 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 13:75237456 (GRCh38)
13:75811592 (GRCh37)
Canonical SPDI:: NC_000013.11:75237452:AGAGA:AGA
Gene:: CTAGE11P (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGA=0./0 (ALFA)
-=0.000034/9 (TOPMED)
HGVS:: NC_000013.11:g.75237454GA[1], NC_000013.10:g.75811590GA[1]

Select item 148071249719.

rs1480712497 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 13:75241150 (GRCh38)
13:75815286 (GRCh37)
Canonical SPDI:: NC_000013.11:75241149:A:T
Gene:: CTAGE11P (Varview), LINC01078 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.75241150A>T, NC_000013.10:g.75815286A>T

Select item 147994379720.

rs1479943797 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 13:75238203 (GRCh38)
13:75812339 (GRCh37)
Canonical SPDI:: NC_000013.11:75238202:G:A,NC_000013.11:75238202:G:T
Gene:: CTAGE11P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000637/11 (TOMMO)
HGVS:: NC_000013.11:g.75238203G>A, NC_000013.11:g.75238203G>T, NC_000013.10:g.75812339G>A, NC_000013.10:g.75812339G>T, NR_027466.1:n.2179C>T, NR_027466.1:n.2179C>A

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