SNP Links for Gene (Select 65078) - SNP

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Select item 14914560761.

rs1491456076 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CCA [Show Flanks]
Chromosome:: 22:20252080 (GRCh38)
22:20239604 (GRCh37)
Canonical SPDI:: NC_000022.11:20252080:CA:CACCA
Gene:: RTN4R (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: CAC=0.00035/10 (TOMMO)
CAC=0.00328/6 (Korea1K)
HGVS:: NC_000022.11:g.20252082_20252083insCCA, NC_000022.10:g.20239605_20239606insCCA, NG_012176.2:g.21213_21214insGTG

Select item 14912331982.

rs1491233198 [Homo sapiens]

Variant type:: SNV:
Alleles:: TC>-
Chromosome:: no mapping
Canonical SPDI:

Select item 14909568533.

rs1490956853 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:20261746 (GRCh38)
22:20249269 (GRCh37)
Canonical SPDI:: NC_000022.11:20261745:C:T
Gene:: RTN4R (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0./0 (GnomAD)
T=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.20261746C>T, NC_000022.10:g.20249269C>T, NG_012176.2:g.11548G>A

Select item 14908661484.

rs1490866148 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:20248279 (GRCh38)
22:20235802 (GRCh37)
Canonical SPDI:: NC_000022.11:20248278:C:T
Gene:: RTN4R (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000214/3 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.20248279C>T, NC_000022.10:g.20235802C>T, NG_012176.2:g.25015G>A

Select item 14907448235.

rs1490744823 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 22:20247537 (GRCh38)
22:20235060 (GRCh37)
Canonical SPDI:: NC_000022.11:20247536:C:G
Gene:: RTN4R (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.20247537C>G, NC_000022.10:g.20235060C>G, NG_012176.2:g.25757G>C

Select item 14906943906.

rs1490694390 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 22:20265591 (GRCh38)
22:20253114 (GRCh37)
Canonical SPDI:: NC_000022.11:20265590:G:A,NC_000022.11:20265590:G:C
Gene:: RTN4R (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000084/1 (ALFA)
C=0.000026/7 (TOPMED)
C=0.000043/6 (GnomAD)
A=0.000342/1 (KOREAN)
HGVS:: NC_000022.11:g.20265591G>A, NC_000022.11:g.20265591G>C, NC_000022.10:g.20253114G>A, NC_000022.10:g.20253114G>C, NG_012176.2:g.7703C>T, NG_012176.2:g.7703C>G

Select item 14906069697.

rs1490606969 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 22:20253297 (GRCh38)
22:20240820 (GRCh37)
Canonical SPDI:: NC_000022.11:20253296:G:T
Gene:: RTN4R (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.20253297G>T, NC_000022.10:g.20240820G>T, NG_012176.2:g.19997C>A

Select item 14905798528.

rs1490579852 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:20268195 (GRCh38)
22:20255718 (GRCh37)
Canonical SPDI:: NC_000022.11:20268194:G:A
Gene:: RTN4R (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.20268195G>A, NC_000022.10:g.20255718G>A, NG_012176.2:g.5099C>T, NM_023004.6:c.-103C>T, NM_023004.5:c.-103C>T

Select item 14905490879.

rs1490549087 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:20267521 (GRCh38)
22:20255044 (GRCh37)
Canonical SPDI:: NC_000022.11:20267520:G:A
Gene:: RTN4R (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000548/1 (Korea1K)
HGVS:: NC_000022.11:g.20267521G>A, NC_000022.10:g.20255044G>A, NG_012176.2:g.5773C>T

Select item 149037722010.

rs1490377220 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:20247277 (GRCh38)
22:20234800 (GRCh37)
Canonical SPDI:: NC_000022.11:20247276:G:A
Gene:: RTN4R (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000022.11:g.20247277G>A, NC_000022.10:g.20234800G>A, NG_012176.2:g.26017C>T

Select item 149024910911.

rs1490249109 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 22:20268889 (GRCh38)
22:20256412 (GRCh37)
Canonical SPDI:: NC_000022.11:20268888:G:T
Gene:: RTN4R (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.20268889G>T, NC_000022.10:g.20256412G>T, NG_012176.2:g.4405C>A

Select item 149020230812.

rs1490202308 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:20264732 (GRCh38)
22:20252255 (GRCh37)
Canonical SPDI:: NC_000022.11:20264731:C:T
Gene:: RTN4R (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
HGVS:: NC_000022.11:g.20264732C>T, NC_000022.10:g.20252255C>T, NG_012176.2:g.8562G>A

Select item 149000239613.

rs1490002396 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:20248543 (GRCh38)
22:20236066 (GRCh37)
Canonical SPDI:: NC_000022.11:20248542:C:T
Gene:: RTN4R (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.20248543C>T, NC_000022.10:g.20236066C>T, NG_012176.2:g.24751G>A

Select item 148992796014.

rs1489927960 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 22:20248034 (GRCh38)
22:20235557 (GRCh37)
Canonical SPDI:: NC_000022.11:20248033:G:A,NC_000022.11:20248033:G:T
Gene:: RTN4R (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000022.11:g.20248034G>A, NC_000022.11:g.20248034G>T, NC_000022.10:g.20235557G>A, NC_000022.10:g.20235557G>T, NG_012176.2:g.25260C>T, NG_012176.2:g.25260C>A

Select item 148988333215.

rs1489883332 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 22:20246388 (GRCh38)
22:20233911 (GRCh37)
Canonical SPDI:: NC_000022.11:20246387:C:A
Gene:: RTN4R (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.20246388C>A, NC_000022.10:g.20233911C>A, NG_012176.2:g.26906G>T

Select item 148972918716.

rs1489729187 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:20268468 (GRCh38)
22:20255991 (GRCh37)
Canonical SPDI:: NC_000022.11:20268467:G:A
Gene:: RTN4R (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.20268468G>A, NC_000022.10:g.20255991G>A, NG_012176.2:g.4826C>T

Select item 148952787617.

rs1489527876 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:20253435 (GRCh38)
22:20240958 (GRCh37)
Canonical SPDI:: NC_000022.11:20253434:C:T
Gene:: RTN4R (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000022.11:g.20253435C>T, NC_000022.10:g.20240958C>T, NG_012176.2:g.19859G>A

Select item 148940675218.

rs1489406752 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 22:20267533 (GRCh38)
22:20255056 (GRCh37)
Canonical SPDI:: NC_000022.11:20267532:G:T
Gene:: RTN4R (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.20267533G>T, NC_000022.10:g.20255056G>T, NG_012176.2:g.5761C>A

Select item 148913627419.

rs1489136274 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 22:20242649 (GRCh38)
22:20230172 (GRCh37)
Canonical SPDI:: NC_000022.11:20242648:G:A,NC_000022.11:20242648:G:C
Gene:: RTN4R (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant,stop_gained
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000022.11:g.20242649G>A, NC_000022.11:g.20242649G>C, NC_000022.10:g.20230172G>A, NC_000022.10:g.20230172G>C, NG_012176.2:g.30645C>T, NG_012176.2:g.30645C>G, NM_023004.6:c.484C>T, NM_023004.6:c.484C>G, NM_023004.5:c.484C>T, NM_023004.5:c.484C>G, NP_075380.1:p.Gln162Ter, NP_075380.1:p.Gln162Glu

Select item 148900288120.

rs1489002881 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:20241257 (GRCh38)
22:20228780 (GRCh37)
Canonical SPDI:: NC_000022.11:20241256:G:A
Gene:: RTN4R (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.20241257G>A, NC_000022.10:g.20228780G>A, NG_012176.2:g.32037C>T

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