SNP Links for Gene (Select 6586) - SNP

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Select item 14915877891.

rs1491587789 has merged into rs71698425 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTT>-,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTATTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 5:169238553 (GRCh38)
5:168665557 (GRCh37)
Canonical SPDI:: NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTATTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000005.10:169238543:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTT=0./0 (ALFA)
T=0.4784/2396 (1000Genomes)
HGVS:: NC_000005.10:g.169238553_169238563del, NC_000005.10:g.169238558_169238563del, NC_000005.10:g.169238559_169238563del, NC_000005.10:g.169238560_169238563del, NC_000005.10:g.169238561_169238563del, NC_000005.10:g.169238562_169238563del, NC_000005.10:g.169238563del, NC_000005.10:g.169238563dup, NC_000005.10:g.169238562_169238563dup, NC_000005.10:g.169238544_169238563T[22]ATTTTTTTTTTTTTTTTTTTTTTTTTTTATTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT[1], NC_000005.10:g.169238561_169238563dup, NC_000005.10:g.169238560_169238563dup, NC_000005.10:g.169238559_169238563dup, NC_000005.10:g.169238558_169238563dup, NC_000005.10:g.169238557_169238563dup, NC_000005.10:g.169238556_169238563dup, NC_000005.10:g.169238555_169238563dup, NC_000005.10:g.169238546_169238563dup, NC_000005.10:g.169238563_169238564insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000005.10:g.169238563_169238564insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000005.9:g.168665557_168665567del, NC_000005.9:g.168665562_168665567del, NC_000005.9:g.168665563_168665567del, NC_000005.9:g.168665564_168665567del, NC_000005.9:g.168665565_168665567del, NC_000005.9:g.168665566_168665567del, NC_000005.9:g.168665567del, NC_000005.9:g.168665567dup, NC_000005.9:g.168665566_168665567dup, NC_000005.9:g.168665548_168665567T[22]ATTTTTTTTTTTTTTTTTTTTTTTTTTTATTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT[1], NC_000005.9:g.168665565_168665567dup, NC_000005.9:g.168665564_168665567dup, NC_000005.9:g.168665563_168665567dup, NC_000005.9:g.168665562_168665567dup, NC_000005.9:g.168665561_168665567dup, NC_000005.9:g.168665560_168665567dup, NC_000005.9:g.168665559_168665567dup, NC_000005.9:g.168665550_168665567dup, NC_000005.9:g.168665567_168665568insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000005.9:g.168665567_168665568insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NG_033081.1:g.67576_67586del, NG_033081.1:g.67581_67586del, NG_033081.1:g.67582_67586del, NG_033081.1:g.67583_67586del, NG_033081.1:g.67584_67586del, NG_033081.1:g.67585_67586del, NG_033081.1:g.67586del, NG_033081.1:g.67586dup, NG_033081.1:g.67585_67586dup, NG_033081.1:g.67567_67586A[45]GAAATAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAA[1], NG_033081.1:g.67584_67586dup, NG_033081.1:g.67583_67586dup, NG_033081.1:g.67582_67586dup, NG_033081.1:g.67581_67586dup, NG_033081.1:g.67580_67586dup, NG_033081.1:g.67579_67586dup, NG_033081.1:g.67578_67586dup, NG_033081.1:g.67569_67586dup, NG_033081.1:g.67586_67587insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NG_033081.1:g.67586_67587insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Select item 14915838702.

rs1491583870 has merged into rs1554138524 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>-,CTCT [Show Flanks]
Chromosome:: 5:168755425 (GRCh38)
5:168182430 (GRCh37)
Canonical SPDI:: NC_000005.10:168755423:TCT:T,NC_000005.10:168755423:TCT:TCTCT
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCTCT=0./0 (ALFA)
-=0.00032/4 (TOMMO)
HGVS:: NC_000005.10:g.168755425_168755426del, NC_000005.10:g.168755425_168755426dup, NC_000005.9:g.168182430_168182431del, NC_000005.9:g.168182430_168182431dup, NG_033081.1:g.550704_550705del, NG_033081.1:g.550704_550705dup

Select item 14915818053.

rs1491581805 has merged into rs1158252144 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT,TTTCTTTT,TTTT [Show Flanks]
Chromosome:: 5:168755419 (GRCh38)
5:168182424 (GRCh37)
Canonical SPDI:: NC_000005.10:168755417:TTT:T,NC_000005.10:168755417:TTT:TT,NC_000005.10:168755417:TTT:TTTT,NC_000005.10:168755417:TTT:TTTTCTTTT,NC_000005.10:168755417:TTT:TTTTT
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000005.10:g.168755419_168755420del, NC_000005.10:g.168755420del, NC_000005.10:g.168755420dup, NC_000005.10:g.168755418_168755420T[4]CTTTT[1], NC_000005.10:g.168755419_168755420dup, NC_000005.9:g.168182424_168182425del, NC_000005.9:g.168182425del, NC_000005.9:g.168182425dup, NC_000005.9:g.168182423_168182425T[4]CTTTT[1], NC_000005.9:g.168182424_168182425dup, NG_033081.1:g.550710_550711del, NG_033081.1:g.550711del, NG_033081.1:g.550711dup, NG_033081.1:g.550709_550711A[4]GAAAA[1], NG_033081.1:g.550710_550711dup

Select item 14915800464.

rs1491580046 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CCT,CTTTCT [Show Flanks]
Chromosome:: 5:168755430 (GRCh38)
5:168182436 (GRCh37)
Canonical SPDI:: NC_000005.10:168755430:T:TCCT,NC_000005.10:168755430:T:TCTTTCT
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TCTTTCT=0./0 (ALFA)
TCC=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.168755431_168755432insCCT, NC_000005.10:g.168755431_168755432insCTTTCT, NC_000005.9:g.168182436_168182437insCCT, NC_000005.9:g.168182436_168182437insCTTTCT, NG_033081.1:g.550698_550699insGGA, NG_033081.1:g.550698_550699insGAAAGA

Select item 14915771395.

rs1491577139 has merged into rs1425717076 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>-,GAGA,GAGAGA [Show Flanks]
Chromosome:: 5:168884549 (GRCh38)
5:168311554 (GRCh37)
Canonical SPDI:: NC_000005.10:168884546:GAGA:GA,NC_000005.10:168884546:GAGA:GAGAGA,NC_000005.10:168884546:GAGA:GAGAGAGA
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: GAGAGA=0./0 (ALFA)
-=0.00041/4 (GnomAD)
HGVS:: NC_000005.10:g.168884547GA[1], NC_000005.10:g.168884547GA[3], NC_000005.10:g.168884547GA[4], NC_000005.9:g.168311552GA[1], NC_000005.9:g.168311552GA[3], NC_000005.9:g.168311552GA[4], NG_033081.1:g.421579TC[1], NG_033081.1:g.421579TC[3], NG_033081.1:g.421579TC[4]

Select item 14915759996.

rs1491575999 has merged into rs72344992 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTT>-,TTTT,TTTTTT,TTTTTTT [Show Flanks]
Chromosome:: 5:169229220 (GRCh38)
5:168656224 (GRCh37)
Canonical SPDI:: NC_000005.10:169229214:TTTTTTTTTT:TTTTT,NC_000005.10:169229214:TTTTTTTTTT:TTTTTTTTT,NC_000005.10:169229214:TTTTTTTTTT:TTTTTTTTTTT,NC_000005.10:169229214:TTTTTTTTTT:TTTTTTTTTTTT
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTT=0.0005/7 (ALFA)
-=0.001136/5 (1000Genomes)
T=0.068794/18209 (TOPMED)
T=0.084009/373 (Estonian)
HGVS:: NC_000005.10:g.169229220_169229224del, NC_000005.10:g.169229224del, NC_000005.10:g.169229224dup, NC_000005.10:g.169229223_169229224dup, NC_000005.9:g.168656224_168656228del, NC_000005.9:g.168656228del, NC_000005.9:g.168656228dup, NC_000005.9:g.168656227_168656228dup, NG_033081.1:g.76911_76915del, NG_033081.1:g.76915del, NG_033081.1:g.76915dup, NG_033081.1:g.76914_76915dup

Select item 14915739707.

rs1491573970 has merged into rs35743496 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTT>-,T,TT,TTTT,TTTTT,TTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 5:169011958 (GRCh38)
5:168438963 (GRCh37)
Canonical SPDI:: NC_000005.10:169011946:TTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000005.10:169011946:TTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000005.10:169011946:TTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000005.10:169011946:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000005.10:169011946:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000005.10:169011946:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000005.10:169011946:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000005.10:169011946:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000005.10:169011946:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: SLIT3 (Varview), SLIT3-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTTT=0./0 (ALFA)
T=0.372/1863 (1000Genomes)
HGVS:: NC_000005.10:g.169011958_169011960del, NC_000005.10:g.169011959_169011960del, NC_000005.10:g.169011960del, NC_000005.10:g.169011960dup, NC_000005.10:g.169011959_169011960dup, NC_000005.10:g.169011958_169011960dup, NC_000005.10:g.169011951_169011960dup, NC_000005.10:g.169011949_169011960dup, NC_000005.10:g.169011960_169011961insTTTTTTTTTTTTTTTTT, NC_000005.9:g.168438963_168438965del, NC_000005.9:g.168438964_168438965del, NC_000005.9:g.168438965del, NC_000005.9:g.168438965dup, NC_000005.9:g.168438964_168438965dup, NC_000005.9:g.168438963_168438965dup, NC_000005.9:g.168438956_168438965dup, NC_000005.9:g.168438954_168438965dup, NC_000005.9:g.168438965_168438966insTTTTTTTTTTTTTTTTT, NG_033081.1:g.294180_294182del, NG_033081.1:g.294181_294182del, NG_033081.1:g.294182del, NG_033081.1:g.294182dup, NG_033081.1:g.294181_294182dup, NG_033081.1:g.294180_294182dup, NG_033081.1:g.294173_294182dup, NG_033081.1:g.294171_294182dup, NG_033081.1:g.294182_294183insAAAAAAAAAAAAAAAAA

Select item 14915715328.

rs1491571532 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CCT,CCTTCCT,CCTTCCTTCCTTCCTTCCTTCCT,CTTTCT,CTTTCTTCTTTCT [Show Flanks]
Chromosome:: 5:168755410 (GRCh38)
5:168182416 (GRCh37)
Canonical SPDI:: NC_000005.10:168755410:T:TCCT,NC_000005.10:168755410:T:TCCTTCCT,NC_000005.10:168755410:T:TCCTTCCTTCCTTCCTTCCTTCCT,NC_000005.10:168755410:T:TCTTTCT,NC_000005.10:168755410:T:TCTTTCTTCTTTCT
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCCTTCCT=0./0 (ALFA)
TCCTTCC=0.000004/1 (TOPMED)
TCCTTCCTTCCTTCCTTCCTTCC=0.000044/1 (GnomAD)
HGVS:: NC_000005.10:g.168755411_168755412insCCT, NC_000005.10:g.168755411_168755412insCCTTCCT, NC_000005.10:g.168755411_168755412insCCTTCCTTCCTTCCTTCCTTCCT, NC_000005.10:g.168755411_168755412insCTTTCT, NC_000005.10:g.168755411_168755412insCTTTCTTCTTTCT, NC_000005.9:g.168182416_168182417insCCT, NC_000005.9:g.168182416_168182417insCCTTCCT, NC_000005.9:g.168182416_168182417insCCTTCCTTCCTTCCTTCCTTCCT, NC_000005.9:g.168182416_168182417insCTTTCT, NC_000005.9:g.168182416_168182417insCTTTCTTCTTTCT, NG_033081.1:g.550718_550719insGGA, NG_033081.1:g.550718_550719insGGAAGGA, NG_033081.1:g.550718_550719insGGAAGGAAGGAAGGAAGGAAGGA, NG_033081.1:g.550718_550719insGAAAGA, NG_033081.1:g.550718_550719insGAAAGAAGAAAGA

Select item 14915661179.

rs1491566117 has merged into rs1177389865 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTT>-,TT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 5:169153980 (GRCh38)
5:168580984 (GRCh37)
Canonical SPDI:: NC_000005.10:169153971:TTTTTTTTTTTTTTTTT:TTTTTTTT,NC_000005.10:169153971:TTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000005.10:169153971:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000005.10:169153971:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000005.10:169153971:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000005.10:169153971:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000005.10:169153971:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000005.10:169153971:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000005.10:169153971:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000005.10:169153971:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000005.10:169153971:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.169153980_169153988del, NC_000005.10:g.169153982_169153988del, NC_000005.10:g.169153985_169153988del, NC_000005.10:g.169153986_169153988del, NC_000005.10:g.169153987_169153988del, NC_000005.10:g.169153988del, NC_000005.10:g.169153988dup, NC_000005.10:g.169153987_169153988dup, NC_000005.10:g.169153986_169153988dup, NC_000005.10:g.169153985_169153988dup, NC_000005.10:g.169153984_169153988dup, NC_000005.9:g.168580984_168580992del, NC_000005.9:g.168580986_168580992del, NC_000005.9:g.168580989_168580992del, NC_000005.9:g.168580990_168580992del, NC_000005.9:g.168580991_168580992del, NC_000005.9:g.168580992del, NC_000005.9:g.168580992dup, NC_000005.9:g.168580991_168580992dup, NC_000005.9:g.168580990_168580992dup, NC_000005.9:g.168580989_168580992dup, NC_000005.9:g.168580988_168580992dup, NG_033081.1:g.152150_152158del, NG_033081.1:g.152152_152158del, NG_033081.1:g.152155_152158del, NG_033081.1:g.152156_152158del, NG_033081.1:g.152157_152158del, NG_033081.1:g.152158del, NG_033081.1:g.152158dup, NG_033081.1:g.152157_152158dup, NG_033081.1:g.152156_152158dup, NG_033081.1:g.152155_152158dup, NG_033081.1:g.152154_152158dup

Select item 149156439910.

rs1491564399 has merged into rs1166833231 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT,TTTCTTTT,TTTT [Show Flanks]
Chromosome:: 5:168755431 (GRCh38)
5:168182436 (GRCh37)
Canonical SPDI:: NC_000005.10:168755429:TTT:T,NC_000005.10:168755429:TTT:TT,NC_000005.10:168755429:TTT:TTTT,NC_000005.10:168755429:TTT:TTTTCTTTT,NC_000005.10:168755429:TTT:TTTTT
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.00043/7 (TOMMO)
HGVS:: NC_000005.10:g.168755431_168755432del, NC_000005.10:g.168755432del, NC_000005.10:g.168755432dup, NC_000005.10:g.168755430_168755432T[4]CTTTT[1], NC_000005.10:g.168755431_168755432dup, NC_000005.9:g.168182436_168182437del, NC_000005.9:g.168182437del, NC_000005.9:g.168182437dup, NC_000005.9:g.168182435_168182437T[4]CTTTT[1], NC_000005.9:g.168182436_168182437dup, NG_033081.1:g.550698_550699del, NG_033081.1:g.550699del, NG_033081.1:g.550699dup, NG_033081.1:g.550697_550699A[4]GAAAA[1], NG_033081.1:g.550698_550699dup

Select item 149155478111.

rs1491554781 has merged into rs3061744 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 5:168741488 (GRCh38)
5:168168493 (GRCh37)
Canonical SPDI:: NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:168741478:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
-=0.4966/2487 (1000Genomes)
HGVS:: NC_000005.10:g.168741488_168741496del, NC_000005.10:g.168741489_168741496del, NC_000005.10:g.168741490_168741496del, NC_000005.10:g.168741491_168741496del, NC_000005.10:g.168741492_168741496del, NC_000005.10:g.168741493_168741496del, NC_000005.10:g.168741494_168741496del, NC_000005.10:g.168741495_168741496del, NC_000005.10:g.168741496del, NC_000005.10:g.168741496dup, NC_000005.10:g.168741495_168741496dup, NC_000005.10:g.168741494_168741496dup, NC_000005.10:g.168741493_168741496dup, NC_000005.10:g.168741492_168741496dup, NC_000005.10:g.168741491_168741496dup, NC_000005.10:g.168741490_168741496dup, NC_000005.10:g.168741489_168741496dup, NC_000005.10:g.168741488_168741496dup, NC_000005.10:g.168741487_168741496dup, NC_000005.10:g.168741486_168741496dup, NC_000005.10:g.168741485_168741496dup, NC_000005.10:g.168741483_168741496dup, NC_000005.10:g.168741482_168741496dup, NC_000005.10:g.168741481_168741496dup, NC_000005.10:g.168741480_168741496dup, NC_000005.10:g.168741479_168741496dup, NC_000005.10:g.168741496_168741497insAAAAAAAAAAAAAAAAAAAAAAA, NC_000005.9:g.168168493_168168501del, NC_000005.9:g.168168494_168168501del, NC_000005.9:g.168168495_168168501del, NC_000005.9:g.168168496_168168501del, NC_000005.9:g.168168497_168168501del, NC_000005.9:g.168168498_168168501del, NC_000005.9:g.168168499_168168501del, NC_000005.9:g.168168500_168168501del, NC_000005.9:g.168168501del, NC_000005.9:g.168168501dup, NC_000005.9:g.168168500_168168501dup, NC_000005.9:g.168168499_168168501dup, NC_000005.9:g.168168498_168168501dup, NC_000005.9:g.168168497_168168501dup, NC_000005.9:g.168168496_168168501dup, NC_000005.9:g.168168495_168168501dup, NC_000005.9:g.168168494_168168501dup, NC_000005.9:g.168168493_168168501dup, NC_000005.9:g.168168492_168168501dup, NC_000005.9:g.168168491_168168501dup, NC_000005.9:g.168168490_168168501dup, NC_000005.9:g.168168488_168168501dup, NC_000005.9:g.168168487_168168501dup, NC_000005.9:g.168168486_168168501dup, NC_000005.9:g.168168485_168168501dup, NC_000005.9:g.168168484_168168501dup, NC_000005.9:g.168168501_168168502insAAAAAAAAAAAAAAAAAAAAAAA, NG_033081.1:g.564642_564650del, NG_033081.1:g.564643_564650del, NG_033081.1:g.564644_564650del, NG_033081.1:g.564645_564650del, NG_033081.1:g.564646_564650del, NG_033081.1:g.564647_564650del, NG_033081.1:g.564648_564650del, NG_033081.1:g.564649_564650del, NG_033081.1:g.564650del, NG_033081.1:g.564650dup, NG_033081.1:g.564649_564650dup, NG_033081.1:g.564648_564650dup, NG_033081.1:g.564647_564650dup, NG_033081.1:g.564646_564650dup, NG_033081.1:g.564645_564650dup, NG_033081.1:g.564644_564650dup, NG_033081.1:g.564643_564650dup, NG_033081.1:g.564642_564650dup, NG_033081.1:g.564641_564650dup, NG_033081.1:g.564640_564650dup, NG_033081.1:g.564639_564650dup, NG_033081.1:g.564637_564650dup, NG_033081.1:g.564636_564650dup, NG_033081.1:g.564635_564650dup, NG_033081.1:g.564634_564650dup, NG_033081.1:g.564633_564650dup, NG_033081.1:g.564650_564651insTTTTTTTTTTTTTTTTTTTTTTT

Select item 149155420812.

rs1491554208 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->CA
Chromosome:: no mapping
Canonical SPDI:

Select item 149155226613.

rs1491552266 has merged into rs938131007 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>-,ATAT [Show Flanks]
Chromosome:: 5:169198978 (GRCh38)
5:168625982 (GRCh37)
Canonical SPDI:: NC_000005.10:169198975:ATAT:AT,NC_000005.10:169198975:ATAT:ATATAT
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATAT=0./0 (ALFA)
HGVS:: NC_000005.10:g.169198976AT[1], NC_000005.10:g.169198976AT[3], NC_000005.9:g.168625980AT[1], NC_000005.9:g.168625980AT[3], NG_033081.1:g.107151AT[1], NG_033081.1:g.107151AT[3]

Select item 149155010414.

rs1491550104 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 5:169179688 (GRCh38)
5:168606692 (GRCh37)
Canonical SPDI:: NC_000005.10:169179685:ATAT:AT
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ATAT=0./0 (ALFA)
-=0.000015/2 (GnomAD)
HGVS:: NC_000005.10:g.169179686AT[1], NC_000005.9:g.168606690AT[1], NG_033081.1:g.126441AT[1]

Select item 149154988315.

rs1491549883 has merged into rs1449155178 [Homo sapiens]

Variant type:: DELINS
Alleles:: GG>-,G [Show Flanks]
Chromosome:: 5:168746297 (GRCh38)
5:168173302 (GRCh37)
Canonical SPDI:: NC_000005.10:168746295:GGG:G,NC_000005.10:168746295:GGG:GG
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: GGG=0./0 (ALFA)
-=0.00082/23 (TOMMO)
HGVS:: NC_000005.10:g.168746297_168746298del, NC_000005.10:g.168746298del, NC_000005.9:g.168173302_168173303del, NC_000005.9:g.168173303del, NG_033081.1:g.559832_559833del, NG_033081.1:g.559833del

Select item 149154569516.

rs1491545695 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 5:168798223 (GRCh38)
5:168225228 (GRCh37)
Canonical SPDI:: NC_000005.10:168798221:TCT:T
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00017/2 (ALFA)
-=0.00063/27 (GnomAD)
-=0.27643/1025 (TWINSUK)
-=0.30592/1179 (ALSPAC)
HGVS:: NC_000005.10:g.168798223_168798224del, NC_000005.9:g.168225228_168225229del, NG_033081.1:g.507906_507907del

Select item 149154536117.

rs1491545361 has merged into rs1256143849 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>-,CTCT,CTCTCTCT [Show Flanks]
Chromosome:: 5:168755421 (GRCh38)
5:168182426 (GRCh37)
Canonical SPDI:: NC_000005.10:168755419:TCT:T,NC_000005.10:168755419:TCT:TCTCT,NC_000005.10:168755419:TCT:TCTCTCTCT
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCTCT=0./0 (ALFA)
-=0.00026/4 (TOMMO)
-=0.00057/1 (Korea1K)
HGVS:: NC_000005.10:g.168755421_168755422del, NC_000005.10:g.168755421_168755422dup, NC_000005.10:g.168755421CT[4], NC_000005.9:g.168182426_168182427del, NC_000005.9:g.168182426_168182427dup, NC_000005.9:g.168182426CT[4], NG_033081.1:g.550708_550709del, NG_033081.1:g.550708_550709dup, NG_033081.1:g.550708GA[4]

Select item 149154291018.

rs1491542910 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C,CTTCC,CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC [Show Flanks]
Chromosome:: 5:168755396 (GRCh38)
5:168182402 (GRCh37)
Canonical SPDI:: NC_000005.10:168755396:C:CC,NC_000005.10:168755396:C:CCTTCC,NC_000005.10:168755396:C:CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCTTCC=0./0 (ALFA)
CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC=0.00007/1 (TOMMO)
HGVS:: NC_000005.10:g.168755397dup, NC_000005.10:g.168755397_168755398insCTTCC, NC_000005.10:g.168755397CCTT[8]CC[1], NC_000005.9:g.168182402dup, NC_000005.9:g.168182402_168182403insCTTCC, NC_000005.9:g.168182402CCTT[8]CC[1], NG_033081.1:g.550732dup, NG_033081.1:g.550732_550733insGAAGG, NG_033081.1:g.550732GGAA[8]GG[1]

Select item 149154280219.

rs1491542802 has merged into rs1179338839 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>-,CTCT [Show Flanks]
Chromosome:: 5:168755437 (GRCh38)
5:168182442 (GRCh37)
Canonical SPDI:: NC_000005.10:168755435:TCT:T,NC_000005.10:168755435:TCT:TCTCT
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCTCT=0./0 (ALFA)
-=0.00002/1 (GnomAD)
HGVS:: NC_000005.10:g.168755437_168755438del, NC_000005.10:g.168755437_168755438dup, NC_000005.9:g.168182442_168182443del, NC_000005.9:g.168182442_168182443dup, NG_033081.1:g.550692_550693del, NG_033081.1:g.550692_550693dup

Select item 149153917920.

rs1491539179 has merged into rs11323030 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGG>-,G,GG,GGGG,GGGGG,GGGGGG [Show Flanks]
Chromosome:: 5:168793808 (GRCh38)
5:168220813 (GRCh37)
Canonical SPDI:: NC_000005.10:168793800:GGGGGGGGGG:GGGGGGG,NC_000005.10:168793800:GGGGGGGGGG:GGGGGGGG,NC_000005.10:168793800:GGGGGGGGGG:GGGGGGGGG,NC_000005.10:168793800:GGGGGGGGGG:GGGGGGGGGGG,NC_000005.10:168793800:GGGGGGGGGG:GGGGGGGGGGGG,NC_000005.10:168793800:GGGGGGGGGG:GGGGGGGGGGGGG
Gene:: SLIT3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGGGGGG=0./0 (ALFA)
-=0.0013/5 (ALSPAC)
G=0.1/4 (GENOME_DK)
G=0.11/66 (NorthernSweden)
G=0.1347/603 (Estonian)
-=0.3107/376 (1000Genomes)
HGVS:: NC_000005.10:g.168793808_168793810del, NC_000005.10:g.168793809_168793810del, NC_000005.10:g.168793810del, NC_000005.10:g.168793810dup, NC_000005.10:g.168793809_168793810dup, NC_000005.10:g.168793808_168793810dup, NC_000005.9:g.168220813_168220815del, NC_000005.9:g.168220814_168220815del, NC_000005.9:g.168220815del, NC_000005.9:g.168220815dup, NC_000005.9:g.168220814_168220815dup, NC_000005.9:g.168220813_168220815dup, NG_033081.1:g.512326_512328del, NG_033081.1:g.512327_512328del, NG_033081.1:g.512328del, NG_033081.1:g.512328dup, NG_033081.1:g.512327_512328dup, NG_033081.1:g.512326_512328dup

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