SNP Links for Gene (Select 6751) - SNP

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Select item 14904980931.

rs1490498093 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 14:38211722 (GRCh38)
14:38680927 (GRCh37)
Canonical SPDI:: NC_000014.9:38211721:G:T
Gene:: SSTR1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.38211722G>T, NC_000014.8:g.38680927G>T, NM_001049.3:c.*1157G>T, NM_001049.2:c.*1157G>T, XM_047431728.1:c.*1157G>T

Select item 14900321162.

rs1490032116 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:38210137 (GRCh38)
14:38679342 (GRCh37)
Canonical SPDI:: NC_000014.9:38210136:A:G
Gene:: SSTR1 (Varview), LOC124903303 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000014.9:g.38210137A>G, NC_000014.8:g.38679342A>G, NM_001049.3:c.748A>G, NM_001049.2:c.748A>G, XM_047431728.1:c.637A>G, NP_001040.1:p.Met250Val, XP_047287684.1:p.Met213Val

Select item 14897492303.

rs1489749230 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 14:38212320 (GRCh38)
14:38681525 (GRCh37)
Canonical SPDI:: NC_000014.9:38212319:G:T
Gene:: SSTR1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.38212320G>T, NC_000014.8:g.38681525G>T, NM_001049.3:c.*1755G>T, NM_001049.2:c.*1755G>T, XM_047431728.1:c.*1755G>T

Select item 14892309454.

rs1489230945 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:38212813 (GRCh38)
14:38682018 (GRCh37)
Canonical SPDI:: NC_000014.9:38212812:A:G
Gene:: SSTR1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.38212813A>G, NC_000014.8:g.38682018A>G, NM_001049.3:c.*2248A>G, NM_001049.2:c.*2248A>G, XM_047431728.1:c.*2248A>G

Select item 14887711345.

rs1488771134 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 14:38206145 (GRCh38)
14:38675350 (GRCh37)
Canonical SPDI:: NC_000014.9:38206144:C:G,NC_000014.9:38206144:C:T
Gene:: SSTR1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000014.9:g.38206145C>G, NC_000014.9:g.38206145C>T, NC_000014.8:g.38675350C>G, NC_000014.8:g.38675350C>T

Select item 14885821746.

rs1488582174 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 14:38212552 (GRCh38)
14:38681757 (GRCh37)
Canonical SPDI:: NC_000014.9:38212551:C:A,NC_000014.9:38212551:C:T
Gene:: SSTR1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00003/8 (TOPMED)
HGVS:: NC_000014.9:g.38212552C>A, NC_000014.9:g.38212552C>T, NC_000014.8:g.38681757C>A, NC_000014.8:g.38681757C>T, NM_001049.3:c.*1987C>A, NM_001049.3:c.*1987C>T, NM_001049.2:c.*1987C>A, NM_001049.2:c.*1987C>T, XM_047431728.1:c.*1987C>A, XM_047431728.1:c.*1987C>T

Select item 14880579567.

rs1488057956 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:38212250 (GRCh38)
14:38681455 (GRCh37)
Canonical SPDI:: NC_000014.9:38212249:T:C
Gene:: SSTR1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000021/3 (GnomAD)
C=0.000026/7 (TOPMED)
HGVS:: NC_000014.9:g.38212250T>C, NC_000014.8:g.38681455T>C, NM_001049.3:c.*1685T>C, NM_001049.2:c.*1685T>C, XM_047431728.1:c.*1685T>C

Select item 14873279978.

rs1487327997 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:38212873 (GRCh38)
14:38682078 (GRCh37)
Canonical SPDI:: NC_000014.9:38212872:A:G
Gene:: SSTR1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0.0002/1 (ALFA)
G=0.0002/1 (Estonian)
HGVS:: NC_000014.9:g.38212873A>G, NC_000014.8:g.38682078A>G, NM_001049.3:c.*2308A>G, NM_001049.2:c.*2308A>G, XM_047431728.1:c.*2308A>G

Select item 14869953549.

rs1486995354 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:38209477 (GRCh38)
14:38678682 (GRCh37)
Canonical SPDI:: NC_000014.9:38209476:C:T
Gene:: SSTR1 (Varview), LOC124903303 (Varview)
Functional Consequence:: 2KB_upstream_variant,5_prime_UTR_variant,missense_variant,coding_sequence_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: T=0.00001/2 (GnomAD_exomes)
HGVS:: NC_000014.9:g.38209477C>T, NC_000014.8:g.38678682C>T, NM_001049.3:c.88C>T, NM_001049.2:c.88C>T, XM_047431728.1:c.-24C>T, NP_001040.1:p.Pro30Ser

Select item 148670941310.

rs1486709413 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 14:38206135 (GRCh38)
14:38675340 (GRCh37)
Canonical SPDI:: NC_000014.9:38206134:C:A
Gene:: SSTR1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000014.9:g.38206135C>A, NC_000014.8:g.38675340C>A

Select item 148669352611.

rs1486693526 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:38211637 (GRCh38)
14:38680842 (GRCh37)
Canonical SPDI:: NC_000014.9:38211636:T:C
Gene:: SSTR1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.38211637T>C, NC_000014.8:g.38680842T>C, NM_001049.3:c.*1072T>C, NM_001049.2:c.*1072T>C, XM_047431728.1:c.*1072T>C

Select item 148629421312.

rs1486294213 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:38209290 (GRCh38)
14:38678495 (GRCh37)
Canonical SPDI:: NC_000014.9:38209289:G:A
Gene:: SSTR1 (Varview), LOC124903303 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000014.9:g.38209290G>A, NC_000014.8:g.38678495G>A, NM_001049.3:c.-100G>A, NM_001049.2:c.-100G>A

Select item 148604094313.

rs1486040943 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:38208363 (GRCh38)
14:38677568 (GRCh37)
Canonical SPDI:: NC_000014.9:38208362:T:C
Gene:: SSTR1 (Varview), LOC124903303 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.38208363T>C, NC_000014.8:g.38677568T>C

Select item 148581995314.

rs1485819953 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 14:38207660 (GRCh38)
14:38676865 (GRCh37)
Canonical SPDI:: NC_000014.9:38207659:C:
Gene:: SSTR1 (Varview), LOC124903303 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000021/3 (GnomAD)
-=0.00003/8 (TOPMED)
HGVS:: NC_000014.9:g.38207660del, NC_000014.8:g.38676865del, XR_007064117.1:n.823del

Select item 148581518215.

rs1485815182 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:38210570 (GRCh38)
14:38679775 (GRCh37)
Canonical SPDI:: NC_000014.9:38210569:G:A
Gene:: SSTR1 (Varview), LOC124903303 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant
Validated:: by frequency
MAF:: A=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000014.9:g.38210570G>A, NC_000014.8:g.38679775G>A, NM_001049.3:c.*5G>A, NM_001049.2:c.*5G>A, XM_047431728.1:c.*5G>A

Select item 148483759116.

rs1484837591 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 14:38208156 (GRCh38)
14:38677361 (GRCh37)
Canonical SPDI:: NC_000014.9:38208155:T:A
Gene:: SSTR1 (Varview), LOC124903303 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000014.9:g.38208156T>A, NC_000014.8:g.38677361T>A, XR_007064117.1:n.327A>T

Select item 148473606617.

rs1484736066 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:38211635 (GRCh38)
14:38680840 (GRCh37)
Canonical SPDI:: NC_000014.9:38211634:T:C
Gene:: SSTR1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
HGVS:: NC_000014.9:g.38211635T>C, NC_000014.8:g.38680840T>C, NM_001049.3:c.*1070T>C, NM_001049.2:c.*1070T>C, XM_047431728.1:c.*1070T>C

Select item 148465547418.

rs1484655474 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:38209747 (GRCh38)
14:38678952 (GRCh37)
Canonical SPDI:: NC_000014.9:38209746:T:C
Gene:: SSTR1 (Varview), LOC124903303 (Varview)
Functional Consequence:: coding_sequence_variant,2KB_upstream_variant,upstream_transcript_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000014.9:g.38209747T>C, NC_000014.8:g.38678952T>C, NM_001049.3:c.358T>C, NM_001049.2:c.358T>C, XM_047431728.1:c.247T>C

Select item 148458136219.

rs1484581362 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAT>- [Show Flanks]
Chromosome:: 14:38209072 (GRCh38)
14:38678277 (GRCh37)
Canonical SPDI:: NC_000014.9:38209070:TAAT:T
Gene:: SSTR1 (Varview), LOC124903303 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000019/5 (TOPMED)
HGVS:: NC_000014.9:g.38209072_38209074del, NC_000014.8:g.38678277_38678279del, NM_001049.3:c.-318_-316del, NM_001049.2:c.-318_-316del, XM_047431728.1:c.-226_-224del

Select item 148432828720.

rs1484328287 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 14:38207495 (GRCh38)
14:38676700 (GRCh37)
Canonical SPDI:: NC_000014.9:38207494:T:G
Gene:: SSTR1 (Varview), LOC124903303 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000064/17 (TOPMED)
G=0.000071/1 (TOMMO)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000014.9:g.38207495T>G, NC_000014.8:g.38676700T>G, XR_007064117.1:n.988A>C

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