SNP Links for Gene (Select 677807) - SNP

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Links from Gene

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Select item 14902133011.

rs1490213301 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:65753876 (GRCh38)
7:65218863 (GRCh37)
Canonical SPDI:: NC_000007.14:65753875:A:G
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.65753876A>G, NC_000007.13:g.65218863A>G, NW_004775430.1:g.206707A>G

Select item 14901873132.

rs1490187313 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 7:65754774 (GRCh38)
7:65219761 (GRCh37)
Canonical SPDI:: NC_000007.14:65754773:A:C
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.65754774A>C, NC_000007.13:g.65219761A>C, NW_004775430.1:g.207605A>C

Select item 14897063173.

rs1489706317 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:65756036 (GRCh38)
7:65221023 (GRCh37)
Canonical SPDI:: NC_000007.14:65756035:A:G
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000026/7 (TOPMED)
HGVS:: NC_000007.14:g.65756036A>G, NC_000007.13:g.65221023A>G, NW_004775430.1:g.208867A>G

Select item 14896571614.

rs1489657161 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:65754230 (GRCh38)
7:65219217 (GRCh37)
Canonical SPDI:: NC_000007.14:65754229:C:A,NC_000007.14:65754229:C:T
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00003/8 (TOPMED)
HGVS:: NC_000007.14:g.65754230C>A, NC_000007.14:g.65754230C>T, NC_000007.13:g.65219217C>A, NC_000007.13:g.65219217C>T, NW_004775430.1:g.207061C>A, NW_004775430.1:g.207061C>T

Select item 14896053045.

rs1489605304 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:65755077 (GRCh38)
7:65220064 (GRCh37)
Canonical SPDI:: NC_000007.14:65755076:G:A
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000007.14:g.65755077G>A, NC_000007.13:g.65220064G>A, NW_004775430.1:g.207908G>A

Select item 14892377926.

rs1489237792 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 7:65755108 (GRCh38)
7:65220095 (GRCh37)
Canonical SPDI:: NC_000007.14:65755107:A:G,NC_000007.14:65755107:A:T
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.65755108A>G, NC_000007.14:g.65755108A>T, NC_000007.13:g.65220095A>G, NC_000007.13:g.65220095A>T, NW_004775430.1:g.207939A>G, NW_004775430.1:g.207939A>T

Select item 14889811507.

rs1488981150 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:65756141 (GRCh38)
7:65221128 (GRCh37)
Canonical SPDI:: NC_000007.14:65756140:G:A
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000069/1 (ALFA)
A=0.000098/26 (TOPMED)
A=0.000143/20 (GnomAD)
HGVS:: NC_000007.14:g.65756141G>A, NC_000007.13:g.65221128G>A, NW_004775430.1:g.208972G>A

Select item 14876427358.

rs1487642735 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:65756015 (GRCh38)
7:65221002 (GRCh37)
Canonical SPDI:: NC_000007.14:65756014:G:A
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000007.14:g.65756015G>A, NC_000007.13:g.65221002G>A, NW_004775430.1:g.208846G>A

Select item 14855299289.

rs1485529928 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 7:65754137 (GRCh38)
7:65219124 (GRCh37)
Canonical SPDI:: NC_000007.14:65754136:A:G,NC_000007.14:65754136:A:T
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000064/9 (GnomAD)
HGVS:: NC_000007.14:g.65754137A>G, NC_000007.14:g.65754137A>T, NC_000007.13:g.65219124A>G, NC_000007.13:g.65219124A>T, NW_004775430.1:g.206968A>G, NW_004775430.1:g.206968A>T

Select item 148207675810.

rs1482076758 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:65753967 (GRCh38)
7:65218954 (GRCh37)
Canonical SPDI:: NC_000007.14:65753966:C:T
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000035/1 (TOMMO)
T=0.000051/7 (GnomAD)
T=0.000072/19 (TOPMED)
HGVS:: NC_000007.14:g.65753967C>T, NC_000007.13:g.65218954C>T, NW_004775430.1:g.206798C>T

Select item 148177179911.

rs1481771799 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:65754014 (GRCh38)
7:65219001 (GRCh37)
Canonical SPDI:: NC_000007.14:65754013:C:T
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.65754014C>T, NC_000007.13:g.65219001C>T, NW_004775430.1:g.206845C>T

Select item 148114220912.

rs1481142209 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 7:65754397 (GRCh38)
7:65219384 (GRCh37)
Canonical SPDI:: NC_000007.14:65754396:TTT:TT
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.65754399del, NC_000007.13:g.65219386del, NW_004775430.1:g.207230del

Select item 148041948013.

rs1480419480 has merged into rs1270203492 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 7:65753959 (GRCh38)
7:65218946 (GRCh37)
Canonical SPDI:: NC_000007.14:65753958:TTTTTTT:TTTTTT,NC_000007.14:65753958:TTTTTTT:TTTTTTTT
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTT=0./0 (ALFA)
-=0.000015/2 (GnomAD)
-=0.000035/1 (TOMMO)
HGVS:: NC_000007.14:g.65753965del, NC_000007.14:g.65753965dup, NC_000007.13:g.65218952del, NC_000007.13:g.65218952dup, NW_004775430.1:g.206796del, NW_004775430.1:g.206796dup

Select item 147944482614.

rs1479444826 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 7:65754307 (GRCh38)
7:65219294 (GRCh37)
Canonical SPDI:: NC_000007.14:65754306:T:G
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.65754307T>G, NC_000007.13:g.65219294T>G, NW_004775430.1:g.207138T>G

Select item 147918762215.

rs1479187622 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 7:65755179 (GRCh38)
7:65220166 (GRCh37)
Canonical SPDI:: NC_000007.14:65755178:T:C,NC_000007.14:65755178:T:G
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.65755179T>C, NC_000007.14:g.65755179T>G, NC_000007.13:g.65220166T>C, NC_000007.13:g.65220166T>G, NW_004775430.1:g.208010T>C, NW_004775430.1:g.208010T>G

Select item 147868888416.

rs1478688884 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 7:65755278 (GRCh38)
7:65220265 (GRCh37)
Canonical SPDI:: NC_000007.14:65755277:C:G,NC_000007.14:65755277:C:T
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000057/8 (GnomAD)
HGVS:: NC_000007.14:g.65755278C>G, NC_000007.14:g.65755278C>T, NC_000007.13:g.65220265C>G, NC_000007.13:g.65220265C>T, NW_004775430.1:g.208109C>G, NW_004775430.1:g.208109C>T

Select item 147722904917.

rs1477229049 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 7:65756105 (GRCh38)
7:65221092 (GRCh37)
Canonical SPDI:: NC_000007.14:65756104:T:G
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00003/8 (TOPMED)
G=0.000043/6 (GnomAD)
HGVS:: NC_000007.14:g.65756105T>G, NC_000007.13:g.65221092T>G, NW_004775430.1:g.208936T>G

Select item 147605328018.

rs1476053280 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:65754759 (GRCh38)
7:65219746 (GRCh37)
Canonical SPDI:: NC_000007.14:65754758:T:C
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000035/1 (TOMMO)
C=0.000036/5 (GnomAD)
HGVS:: NC_000007.14:g.65754759T>C, NC_000007.13:g.65219746T>C, NW_004775430.1:g.207590T>C

Select item 147594213019.

rs1475942130 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:65753867 (GRCh38)
7:65218854 (GRCh37)
Canonical SPDI:: NC_000007.14:65753866:A:G
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000038/10 (TOPMED)
G=0.000043/6 (GnomAD)
HGVS:: NC_000007.14:g.65753867A>G, NC_000007.13:g.65218854A>G, NW_004775430.1:g.206698A>G

Select item 147394247920.

rs1473942479 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:65754687 (GRCh38)
7:65219674 (GRCh37)
Canonical SPDI:: NC_000007.14:65754686:T:C
Gene:: LINC03006 (Varview), CCT6P1 (Varview), SNORA22 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.65754687T>C, NC_000007.13:g.65219674T>C, NW_004775430.1:g.207518T>C