SNP Links for Gene (Select 693170) - SNP

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Links from Gene

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Select item 14909963461.

rs1490996346 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 5:169263391 (GRCh38)
5:168690395 (GRCh37)
Canonical SPDI:: NC_000005.10:169263390:C:A
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.169263391C>A, NC_000005.9:g.168690395C>A, NG_033081.1:g.42739G>T

Select item 14895610212.

rs1489561021 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 5:169265172 (GRCh38)
5:168692176 (GRCh37)
Canonical SPDI:: NC_000005.10:169265171:C:A,NC_000005.10:169265171:C:G
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
G=0.000342/1 (KOREAN)
HGVS:: NC_000005.10:g.169265172C>A, NC_000005.10:g.169265172C>G, NC_000005.9:g.168692176C>A, NC_000005.9:g.168692176C>G, NG_033081.1:g.40958G>T, NG_033081.1:g.40958G>C

Select item 14892095063.

rs1489209506 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:169264553 (GRCh38)
5:168691557 (GRCh37)
Canonical SPDI:: NC_000005.10:169264552:C:T
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.169264553C>T, NC_000005.9:g.168691557C>T, NG_033081.1:g.41577G>A

Select item 14890884804.

rs1489088480 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:169263285 (GRCh38)
5:168690289 (GRCh37)
Canonical SPDI:: NC_000005.10:169263284:G:A
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
A=0.001027/3 (KOREAN)
A=0.00138/23 (TOMMO)
HGVS:: NC_000005.10:g.169263285G>A, NC_000005.9:g.168690289G>A, NG_033081.1:g.42845C>T

Select item 14890146445.

rs1489014644 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:169264050 (GRCh38)
5:168691054 (GRCh37)
Canonical SPDI:: NC_000005.10:169264049:A:G
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.169264050A>G, NC_000005.9:g.168691054A>G, NG_033081.1:g.42080T>C

Select item 14889657416.

rs1488965741 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:169265585 (GRCh38)
5:168692589 (GRCh37)
Canonical SPDI:: NC_000005.10:169265584:G:A
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.169265585G>A, NC_000005.9:g.168692589G>A, NG_033081.1:g.40545C>T

Select item 14888797607.

rs1488879760 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:169264091 (GRCh38)
5:168691095 (GRCh37)
Canonical SPDI:: NC_000005.10:169264090:A:G
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000005.10:g.169264091A>G, NC_000005.9:g.168691095A>G, NG_033081.1:g.42039T>C

Select item 14886449838.

rs1488644983 has merged into rs35338338 [Homo sapiens]

Variant type:: DELINS
Alleles:: CAAACAAACAAA>-,CAAA,CAAACAAA,CAAACAAACAAACAAA,CAAACAAACAAACAAACAAA,CAAACAAACAAACAAACAAACAAA,CAAACAAACAAACAAACAAACAAACAAA [Show Flanks]
Chromosome:: 5:169265172 (GRCh38)
5:168692176 (GRCh37)
Canonical SPDI:: NC_000005.10:169265156:AAACAAACAAACAAACAAACAAACAAA:AAACAAACAAACAAA,NC_000005.10:169265156:AAACAAACAAACAAACAAACAAACAAA:AAACAAACAAACAAACAAA,NC_000005.10:169265156:AAACAAACAAACAAACAAACAAACAAA:AAACAAACAAACAAACAAACAAA,NC_000005.10:169265156:AAACAAACAAACAAACAAACAAACAAA:AAACAAACAAACAAACAAACAAACAAACAAA,NC_000005.10:169265156:AAACAAACAAACAAACAAACAAACAAA:AAACAAACAAACAAACAAACAAACAAACAAACAAA,NC_000005.10:169265156:AAACAAACAAACAAACAAACAAACAAA:AAACAAACAAACAAACAAACAAACAAACAAACAAACAAA,NC_000005.10:169265156:AAACAAACAAACAAACAAACAAACAAA:AAACAAACAAACAAACAAACAAACAAACAAACAAACAAACAAA
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAACAAACAAACAAACAAACAAA=0./0 (ALFA)
HGVS:: NC_000005.10:g.169265160CAAA[3], NC_000005.10:g.169265160CAAA[4], NC_000005.10:g.169265160CAAA[5], NC_000005.10:g.169265160CAAA[7], NC_000005.10:g.169265160CAAA[8], NC_000005.10:g.169265160CAAA[9], NC_000005.10:g.169265160CAAA[10], NC_000005.9:g.168692164CAAA[3], NC_000005.9:g.168692164CAAA[4], NC_000005.9:g.168692164CAAA[5], NC_000005.9:g.168692164CAAA[7], NC_000005.9:g.168692164CAAA[8], NC_000005.9:g.168692164CAAA[9], NC_000005.9:g.168692164CAAA[10], NG_033081.1:g.40950GTTT[3], NG_033081.1:g.40950GTTT[4], NG_033081.1:g.40950GTTT[5], NG_033081.1:g.40950GTTT[7], NG_033081.1:g.40950GTTT[8], NG_033081.1:g.40950GTTT[9], NG_033081.1:g.40950GTTT[10]

Select item 14878650029.

rs1487865002 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 5:169263876 (GRCh38)
5:168690880 (GRCh37)
Canonical SPDI:: NC_000005.10:169263875:G:A,NC_000005.10:169263875:G:C
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.169263876G>A, NC_000005.10:g.169263876G>C, NC_000005.9:g.168690880G>A, NC_000005.9:g.168690880G>C, NG_033081.1:g.42254C>T, NG_033081.1:g.42254C>G

Select item 148724327010.

rs1487243270 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 5:169263802 (GRCh38)
5:168690806 (GRCh37)
Canonical SPDI:: NC_000005.10:169263801:G:T
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.169263802G>T, NC_000005.9:g.168690806G>T, NG_033081.1:g.42328C>A

Select item 148700755611.

rs1487007556 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:169264679 (GRCh38)
5:168691683 (GRCh37)
Canonical SPDI:: NC_000005.10:169264678:T:C
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000005.10:g.169264679T>C, NC_000005.9:g.168691683T>C, NG_033081.1:g.41451A>G

Select item 148640381312.

rs1486403813 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:169263274 (GRCh38)
5:168690278 (GRCh37)
Canonical SPDI:: NC_000005.10:169263273:C:T
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.169263274C>T, NC_000005.9:g.168690278C>T, NG_033081.1:g.42856G>A

Select item 148312959913.

rs1483129599 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 5:169264036 (GRCh38)
5:168691040 (GRCh37)
Canonical SPDI:: NC_000005.10:169264035:G:
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000005.10:g.169264036del, NC_000005.9:g.168691040del, NG_033081.1:g.42094del

Select item 148272473314.

rs1482724733 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:169263632 (GRCh38)
5:168690636 (GRCh37)
Canonical SPDI:: NC_000005.10:169263631:C:T
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
HGVS:: NC_000005.10:g.169263632C>T, NC_000005.9:g.168690636C>T, NG_033081.1:g.42498G>A, NR_030311.1:n.63G>A

Select item 148084905615.

rs1480849056 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 5:169263708 (GRCh38)
5:168690712 (GRCh37)
Canonical SPDI:: NC_000005.10:169263707:G:T
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.169263708G>T, NC_000005.9:g.168690712G>T, NG_033081.1:g.42422C>A

Select item 147986731216.

rs1479867312 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 5:169264930 (GRCh38)
5:168691934 (GRCh37)
Canonical SPDI:: NC_000005.10:169264929:C:G,NC_000005.10:169264929:C:T
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.169264930C>G, NC_000005.10:g.169264930C>T, NC_000005.9:g.168691934C>G, NC_000005.9:g.168691934C>T, NG_033081.1:g.41200G>C, NG_033081.1:g.41200G>A

Select item 147841197817.

rs1478411978 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 5:169265236 (GRCh38)
5:168692240 (GRCh37)
Canonical SPDI:: NC_000005.10:169265235:A:C
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000023/6 (TOPMED)
HGVS:: NC_000005.10:g.169265236A>C, NC_000005.9:g.168692240A>C, NG_033081.1:g.40894T>G

Select item 147836192218.

rs1478361922 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:169264178 (GRCh38)
5:168691182 (GRCh37)
Canonical SPDI:: NC_000005.10:169264177:G:A
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.169264178G>A, NC_000005.9:g.168691182G>A, NG_033081.1:g.41952C>T

Select item 147815832019.

rs1478158320 [Homo sapiens]

Variant type:: INS
Alleles:: ->A [Show Flanks]
Chromosome:: 5:169265232 (GRCh38)
5:168692237 (GRCh37)
Canonical SPDI:: NC_000005.10:169265232::A
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000005.10:g.169265232_169265233insA, NC_000005.9:g.168692236_168692237insA, NG_033081.1:g.40897_40898insT

Select item 147807746420.

rs1478077464 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:169263162 (GRCh38)
5:168690166 (GRCh37)
Canonical SPDI:: NC_000005.10:169263161:T:C
Gene:: SLIT3 (Varview), MIR585 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000142/2 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000005.10:g.169263162T>C, NC_000005.9:g.168690166T>C, NG_033081.1:g.42968A>G

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