SNP Links for Gene (Select 7142) - SNP

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Select item 14904553981.

rs1490455398 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:11269734 (GRCh38)
16:11363591 (GRCh37)
Canonical SPDI:: NC_000016.10:11269733:G:A
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000036/5 (GnomAD)
HGVS:: NC_000016.10:g.11269734G>A, NC_000016.9:g.11363591G>A

Select item 14896521852.

rs1489652185 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:11269107 (GRCh38)
16:11362964 (GRCh37)
Canonical SPDI:: NC_000016.10:11269106:G:T
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: coding_sequence_variant,intron_variant,missense_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000047/1 (ALFA)
T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000016.10:g.11269107G>T, NC_000016.9:g.11362964G>T, NM_005425.5:c.156C>A, NM_005425.4:c.156C>A, NP_005416.1:p.Ser52Arg

Select item 14894179773.

rs1489417977 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 16:11269337 (GRCh38)
16:11363194 (GRCh37)
Canonical SPDI:: NC_000016.10:11269336:C:A,NC_000016.10:11269336:C:G
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000016.10:g.11269337C>A, NC_000016.10:g.11269337C>G, NC_000016.9:g.11363194C>A, NC_000016.9:g.11363194C>G

Select item 14880152194.

rs1488015219 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:11269568 (GRCh38)
16:11363425 (GRCh37)
Canonical SPDI:: NC_000016.10:11269567:C:G
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.11269568C>G, NC_000016.9:g.11363425C>G

Select item 14879085725.

rs1487908572 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:11269050 (GRCh38)
16:11362907 (GRCh37)
Canonical SPDI:: NC_000016.10:11269049:C:G
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: coding_sequence_variant,intron_variant,missense_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000016.10:g.11269050C>G, NC_000016.9:g.11362907C>G, NM_005425.5:c.213G>C, NM_005425.4:c.213G>C, NP_005416.1:p.Gln71His

Select item 14874191406.

rs1487419140 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:11269791 (GRCh38)
16:11363648 (GRCh37)
Canonical SPDI:: NC_000016.10:11269790:C:T
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.11269791C>T, NC_000016.9:g.11363648C>T

Select item 14861435277.

rs1486143527 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:11268563 (GRCh38)
16:11362420 (GRCh37)
Canonical SPDI:: NC_000016.10:11268562:A:G
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000016.10:g.11268563A>G, NC_000016.9:g.11362420A>G

Select item 14858301148.

rs1485830114 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:11271055 (GRCh38)
16:11364912 (GRCh37)
Canonical SPDI:: NC_000016.10:11271054:A:G
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.11271055A>G, NC_000016.9:g.11364912A>G

Select item 14857925359.

rs1485792535 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:11270673 (GRCh38)
16:11364530 (GRCh37)
Canonical SPDI:: NC_000016.10:11270672:G:A
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000038/10 (TOPMED)
HGVS:: NC_000016.10:g.11270673G>A, NC_000016.9:g.11364530G>A

Select item 148451138810.

rs1484511388 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:11267357 (GRCh38)
16:11361214 (GRCh37)
Canonical SPDI:: NC_000016.10:11267356:C:A
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.11267357C>A, NC_000016.9:g.11361214C>A

Select item 148437645011.

rs1484376450 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:11267884 (GRCh38)
16:11361741 (GRCh37)
Canonical SPDI:: NC_000016.10:11267883:G:T
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.11267884G>T, NC_000016.9:g.11361741G>T, NM_005425.5:c.*112C>A, NM_005425.4:c.*112C>A

Select item 148362553212.

rs1483625532 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:11270262 (GRCh38)
16:11364119 (GRCh37)
Canonical SPDI:: NC_000016.10:11270261:C:A
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.11270262C>A, NC_000016.9:g.11364119C>A

Select item 148339353013.

rs1483393530 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:11267479 (GRCh38)
16:11361336 (GRCh37)
Canonical SPDI:: NC_000016.10:11267478:A:G
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.11267479A>G, NC_000016.9:g.11361336A>G

Select item 148174123714.

rs1481741237 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:11271172 (GRCh38)
16:11365029 (GRCh37)
Canonical SPDI:: NC_000016.10:11271171:G:T
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.11271172G>T, NC_000016.9:g.11365029G>T

Select item 148166004015.

rs1481660040 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 16:11268766 (GRCh38)
16:11362623 (GRCh37)
Canonical SPDI:: NC_000016.10:11268765:T:A
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000084/1 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.11268766T>A, NC_000016.9:g.11362623T>A

Select item 148110434216.

rs1481104342 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 16:11268350 (GRCh38)
16:11362207 (GRCh37)
Canonical SPDI:: NC_000016.10:11268349:A:C
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000016.10:g.11268350A>C, NC_000016.9:g.11362207A>C

Select item 148061590317.

rs1480615903 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:11267793 (GRCh38)
16:11361650 (GRCh37)
Canonical SPDI:: NC_000016.10:11267792:G:A
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000016.10:g.11267793G>A, NC_000016.9:g.11361650G>A

Select item 148045978118.

rs1480459781 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:11267595 (GRCh38)
16:11361452 (GRCh37)
Canonical SPDI:: NC_000016.10:11267594:C:A
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.11267595C>A, NC_000016.9:g.11361452C>A

Select item 148042779419.

rs1480427794 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TAGCCAGCC [Show Flanks]
Chromosome:: 16:11268456 (GRCh38)
16:11362314 (GRCh37)
Canonical SPDI:: NC_000016.10:11268456:CTAGCCAGCC:CTAGCCAGCCTAGCCAGCC
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTAGCCAGCCTAGCCAGCC=0./0 (ALFA)
CTAGCCAGC=0.000007/1 (GnomAD)
CTAGCCAGC=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.11268458_11268466dup, NC_000016.9:g.11362315_11362323dup

Select item 147886009420.

rs1478860094 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:11267983 (GRCh38)
16:11361840 (GRCh37)
Canonical SPDI:: NC_000016.10:11267982:G:C
Gene:: TNP2 (Varview), LOC105371082 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,3_prime_UTR_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000016.10:g.11267983G>C, NC_000016.9:g.11361840G>C, NM_005425.5:c.*13C>G, NM_005425.4:c.*13C>G

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