SNP Links for Gene (Select 7280) - SNP

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Links from Gene

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Select item 14909798711.

rs1490979871 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:3156343 (GRCh38)
6:3156577 (GRCh37)
Canonical SPDI:: NC_000006.12:3156342:A:G
Gene:: TUBB2A (Varview), LOC105374889 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.00046/8 (TOMMO)
HGVS:: NC_000006.12:g.3156343A>G, NC_000006.11:g.3156577A>G, NG_042223.1:g.6207T>C

Select item 14881997552.

rs1488199755 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C,G [Show Flanks]
Chromosome:: 6:3158325 (GRCh38)
6:3158559 (GRCh37)
Canonical SPDI:: NC_000006.12:3158324:T:A,NC_000006.12:3158324:T:C,NC_000006.12:3158324:T:G
Gene:: TUBB2A (Varview), LOC105374889 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
T=0.5/14 (SGDP_PRJ)
HGVS:: NC_000006.12:g.3158325T>A, NC_000006.12:g.3158325T>C, NC_000006.12:g.3158325T>G, NC_000006.11:g.3158559T>A, NC_000006.11:g.3158559T>C, NC_000006.11:g.3158559T>G, NG_042223.1:g.4225A>T, NG_042223.1:g.4225A>G, NG_042223.1:g.4225A>C

Select item 14881160953.

rs1488116095 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:3156873 (GRCh38)
6:3157107 (GRCh37)
Canonical SPDI:: NC_000006.12:3156872:T:C
Gene:: TUBB2A (Varview), LOC105374889 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.3156873T>C, NC_000006.11:g.3157107T>C, NG_042223.1:g.5677A>G

Select item 14867912634.

rs1486791263 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 6:3158046 (GRCh38)
6:3158280 (GRCh37)
Canonical SPDI:: NC_000006.12:3158045:TTT:TT
Gene:: TUBB2A (Varview), LOC105374889 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
-=0.000019/5 (TOPMED)
HGVS:: NC_000006.12:g.3158048del, NC_000006.11:g.3158282del, NG_042223.1:g.4504del

Select item 14865768045.

rs1486576804 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:3155005 (GRCh38)
6:3155239 (GRCh37)
Canonical SPDI:: NC_000006.12:3155004:G:A
Gene:: TUBB2A (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.3155005G>A, NC_000006.11:g.3155239G>A, NG_042223.1:g.7545C>T, NM_001310315.2:c.-60C>T, NM_001310315.1:c.-60C>T

Select item 14856930086.

rs1485693008 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:3154547 (GRCh38)
6:3154781 (GRCh37)
Canonical SPDI:: NC_000006.12:3154546:G:A
Gene:: TUBB2A (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.3154547G>A, NC_000006.11:g.3154781G>A, NG_042223.1:g.8003C>T, NM_001069.3:c.654C>T, NM_001069.2:c.654C>T, NM_001310315.2:c.399C>T, NM_001310315.1:c.399C>T

Select item 14848348267.

rs1484834826 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 6:3157544 (GRCh38)
6:3157778 (GRCh37)
Canonical SPDI:: NC_000006.12:3157543:T:C,NC_000006.12:3157543:T:G
Gene:: TUBB2A (Varview), LOC105374889 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.3157544T>C, NC_000006.12:g.3157544T>G, NC_000006.11:g.3157778T>C, NC_000006.11:g.3157778T>G, NG_042223.1:g.5006A>G, NG_042223.1:g.5006A>C, NM_001069.3:c.-81A>G, NM_001069.3:c.-81A>C, NM_001069.2:c.-81A>G, NM_001069.2:c.-81A>C, NM_001310315.2:c.-468A>G, NM_001310315.2:c.-468A>C, NM_001310315.1:c.-468A>G, NM_001310315.1:c.-468A>C

Select item 14846898748.

rs1484689874 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 6:3153684 (GRCh38)
6:3153918 (GRCh37)
Canonical SPDI:: NC_000006.12:3153683:T:C,NC_000006.12:3153683:T:G
Gene:: BPHL (Varview), TUBB2A (Varview)
Functional Consequence:: downstream_transcript_variant,3_prime_UTR_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.3153684T>C, NC_000006.12:g.3153684T>G, NC_000006.11:g.3153918T>C, NC_000006.11:g.3153918T>G, NG_042223.1:g.8866A>G, NG_042223.1:g.8866A>C, NM_001069.3:c.*179A>G, NM_001069.3:c.*179A>C, NM_001069.2:c.*179A>G, NM_001069.2:c.*179A>C, NM_001310315.2:c.*179A>G, NM_001310315.2:c.*179A>C, NM_001310315.1:c.*179A>G, NM_001310315.1:c.*179A>C

Select item 14843143429.

rs1484314342 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:3156466 (GRCh38)
6:3156700 (GRCh37)
Canonical SPDI:: NC_000006.12:3156465:G:A
Gene:: TUBB2A (Varview), LOC105374889 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000006.12:g.3156466G>A, NC_000006.11:g.3156700G>A, NG_042223.1:g.6084C>T

Select item 148424365310.

rs1484243653 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:3157278 (GRCh38)
6:3157512 (GRCh37)
Canonical SPDI:: NC_000006.12:3157277:C:T
Gene:: TUBB2A (Varview), LOC105374889 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.3157278C>T, NC_000006.11:g.3157512C>T, NG_042223.1:g.5272G>A

Select item 148403758911.

rs1484037589 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 6:3156962 (GRCh38)
6:3157196 (GRCh37)
Canonical SPDI:: NC_000006.12:3156961:C:A,NC_000006.12:3156961:C:T
Gene:: TUBB2A (Varview), LOC105374889 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.3156962C>A, NC_000006.12:g.3156962C>T, NC_000006.11:g.3157196C>A, NC_000006.11:g.3157196C>T, NG_042223.1:g.5588G>T, NG_042223.1:g.5588G>A

Select item 148379634512.

rs1483796345 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:3159314 (GRCh38)
6:3159548 (GRCh37)
Canonical SPDI:: NC_000006.12:3159313:G:A
Gene:: TUBB2A (Varview), LOC105374889 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000224/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000006.12:g.3159314G>A, NC_000006.11:g.3159548G>A, NG_042223.1:g.3236C>T, XR_926395.3:n.936G>A

Select item 148374412513.

rs1483744125 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:3157549 (GRCh38)
6:3157783 (GRCh37)
Canonical SPDI:: NC_000006.12:3157548:C:T
Gene:: TUBB2A (Varview), LOC105374889 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000053/14 (TOPMED)
T=0.000057/8 (GnomAD)
HGVS:: NC_000006.12:g.3157549C>T, NC_000006.11:g.3157783C>T, NG_042223.1:g.5001G>A, NM_001069.2:c.-86G>A, NM_001310315.1:c.-473G>A

Select item 148333923814.

rs1483339238 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:3158650 (GRCh38)
6:3158884 (GRCh37)
Canonical SPDI:: NC_000006.12:3158649:T:C
Gene:: TUBB2A (Varview), LOC105374889 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.3158650T>C, NC_000006.11:g.3158884T>C, NG_042223.1:g.3900A>G, XR_926395.3:n.272T>C, XR_926395.2:n.310T>C, XR_926395.1:n.297T>C

Select item 148315460015.

rs1483154600 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:3157626 (GRCh38)
6:3157860 (GRCh37)
Canonical SPDI:: NC_000006.12:3157625:C:T
Gene:: TUBB2A (Varview), LOC105374889 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.3157626C>T, NC_000006.11:g.3157860C>T, NG_042223.1:g.4924G>A

Select item 148307373416.

rs1483073734 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:3156714 (GRCh38)
6:3156948 (GRCh37)
Canonical SPDI:: NC_000006.12:3156713:G:A
Gene:: TUBB2A (Varview), LOC105374889 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.3156714G>A, NC_000006.11:g.3156948G>A, NG_042223.1:g.5836C>T

Select item 148305747117.

rs1483057471 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:3154100 (GRCh38)
6:3154334 (GRCh37)
Canonical SPDI:: NC_000006.12:3154099:G:A
Gene:: TUBB2A (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.3154100G>A, NC_000006.11:g.3154334G>A, NG_042223.1:g.8450C>T, NM_001069.3:c.1101C>T, NM_001069.2:c.1101C>T, NM_001310315.2:c.846C>T, NM_001310315.1:c.846C>T

Select item 148292767418.

rs1482927674 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 6:3156160 (GRCh38)
6:3156394 (GRCh37)
Canonical SPDI:: NC_000006.12:3156159:G:A,NC_000006.12:3156159:G:C
Gene:: TUBB2A (Varview), LOC105374889 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.001119/5 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.3156160G>A, NC_000006.12:g.3156160G>C, NC_000006.11:g.3156394G>A, NC_000006.11:g.3156394G>C, NG_042223.1:g.6390C>T, NG_042223.1:g.6390C>G

Select item 148267832519.

rs1482678325 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:3157190 (GRCh38)
6:3157424 (GRCh37)
Canonical SPDI:: NC_000006.12:3157189:C:T
Gene:: TUBB2A (Varview), LOC105374889 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.3157190C>T, NC_000006.11:g.3157424C>T, NG_042223.1:g.5360G>A

Select item 148263180920.

rs1482631809 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:3155359 (GRCh38)
6:3155593 (GRCh37)
Canonical SPDI:: NC_000006.12:3155358:A:G
Gene:: TUBB2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
G=0.000283/5 (TOMMO)
G=0.000342/1 (KOREAN)
HGVS:: NC_000006.12:g.3155359A>G, NC_000006.11:g.3155593A>G, NG_042223.1:g.7191T>C

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