SNP Links for Gene (Select 729240) - SNP

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Select item 14873645551.

rs1487364555 has merged into rs879958305 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 13:57152636 (GRCh38)
13:57726770 (GRCh37)
Canonical SPDI:: NC_000013.11:57152635:A:C,NC_000013.11:57152635:A:G
Gene:: PRR20C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.0154/154 (ALFA)
G=0.0263/2 (Korea1K)
A=0.0417/2 (SGDP_PRJ)
G=0.0556/83 (TOMMO)
G=0.458/131 (KOREAN)
HGVS:: NC_000013.11:g.57152636A>C, NC_000013.11:g.57152636A>G, NC_000013.10:g.57726770A>C, NC_000013.10:g.57726770A>G, NG_080001.1:g.82A>C, NG_080001.1:g.82A>G

Select item 14731133222.

rs1473113322 [Homo sapiens]

Variant type:: DEL
Alleles:: TCAG>- [Show Flanks]
Chromosome:: 13:57152859 (GRCh38)
13:57726993 (GRCh37)
Canonical SPDI:: NC_000013.11:57152858:TCAG:
Gene:: PRR20C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0.00396/47 (ALFA)
HGVS:: NC_000013.11:g.57152859_57152862del, NC_000013.10:g.57726993_57726996del, NG_080001.1:g.305_308del

Select item 14722328473.

rs1472232847 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 13:57152646 (GRCh38)
13:57726780 (GRCh37)
Canonical SPDI:: NC_000013.11:57152645:C:G
Gene:: PRR20C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0.01981/235 (ALFA)
C=0./0 (SGDP_PRJ)
HGVS:: NC_000013.11:g.57152646C>G, NC_000013.10:g.57726780C>G, NG_080001.1:g.92C>G

Select item 14647273424.

rs1464727342 [Homo sapiens]

Variant type:: DELINS
Alleles:: GCCCCGCCCCCCCC>- [Show Flanks]
Chromosome:: 13:57152866 (GRCh38)
13:57727000 (GRCh37)
Canonical SPDI:: NC_000013.11:57152862:CCCGCCCCGCCCCCCCC:CCC
Gene:: PRR20C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
HGVS:: NC_000013.11:g.57152866_57152879del, NC_000013.10:g.57727000_57727013del, NG_080001.1:g.312_325del

Select item 14606632845.

rs1460663284 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:57153151 (GRCh38)
13:57727285 (GRCh37)
Canonical SPDI:: NC_000013.11:57153150:C:T
Gene:: PRR20C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000013.11:g.57153151C>T, NC_000013.10:g.57727285C>T

Select item 14566647396.

rs1456664739 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:57152866 (GRCh38)
13:57727000 (GRCh37)
Canonical SPDI:: NC_000013.11:57152865:G:C
Gene:: PRR20C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.02228/238 (ALFA)
C=0.09184/18 (KOREAN)
HGVS:: NC_000013.11:g.57152866G>C, NC_000013.10:g.57727000G>C, NG_080001.1:g.312G>C

Select item 14210205587.

rs1421020558 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 13:57152767 (GRCh38)
13:57726901 (GRCh37)
Canonical SPDI:: NC_000013.11:57152766:T:A,NC_000013.11:57152766:T:G
Gene:: PRR20C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000013.11:g.57152767T>A, NC_000013.11:g.57152767T>G, NC_000013.10:g.57726901T>A, NC_000013.10:g.57726901T>G, NG_080001.1:g.213T>A, NG_080001.1:g.213T>G

Select item 14197202868.

rs1419720286 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>-,CC,CCC,CCCC,CCCCCCCCCCCCCCC [Show Flanks]
Chromosome:: 13:57152863 (GRCh38)
13:57726997 (GRCh37)
Canonical SPDI:: NC_000013.11:57152862:CCC:CC,NC_000013.11:57152862:CCC:CCCC,NC_000013.11:57152862:CCC:CCCCC,NC_000013.11:57152862:CCC:CCCCCC,NC_000013.11:57152862:CCC:CCCCCCCCCCCCCCCCC
Gene:: PRR20C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCC=0.01425/169 (ALFA)
-=0.00231/7 (TOMMO)
HGVS:: NC_000013.11:g.57152865del, NC_000013.11:g.57152865dup, NC_000013.11:g.57152864_57152865dup, NC_000013.11:g.57152863_57152865dup, NC_000013.11:g.57152865_57152866insCCCCCCCCCCCCCC, NC_000013.10:g.57726999del, NC_000013.10:g.57726999dup, NC_000013.10:g.57726998_57726999dup, NC_000013.10:g.57726997_57726999dup, NC_000013.10:g.57726999_57727000insCCCCCCCCCCCCCC, NG_080001.1:g.311del, NG_080001.1:g.311dup, NG_080001.1:g.310_311dup, NG_080001.1:g.309_311dup, NG_080001.1:g.311_312insCCCCCCCCCCCCCC

Select item 14098477349.

rs1409847734 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:57152716 (GRCh38)
13:57726850 (GRCh37)
Canonical SPDI:: NC_000013.11:57152715:G:T
Gene:: PRR20C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by cluster
MAF:: G=0./0 (SGDP_PRJ)
T=0.053/12 (KOREAN)
HGVS:: NC_000013.11:g.57152716G>T, NC_000013.10:g.57726850G>T, NG_080001.1:g.162G>T

Select item 140974288710.

rs1409742887 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:57152895 (GRCh38)
13:57727029 (GRCh37)
Canonical SPDI:: NC_000013.11:57152894:T:C
Gene:: PRR20C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.04392/521 (ALFA)
T=0./0 (SGDP_PRJ)
C=0.01639/2 (Korea1K)
C=0.10658/165 (TOMMO)
C=0.13542/52 (KOREAN)
HGVS:: NC_000013.11:g.57152895T>C, NC_000013.10:g.57727029T>C, NG_080001.1:g.341T>C

Select item 139653236411.

rs1396532364 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:57153126 (GRCh38)
13:57727260 (GRCh37)
Canonical SPDI:: NC_000013.11:57153125:T:C
Gene:: PRR20C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0.00059/7 (ALFA)
HGVS:: NC_000013.11:g.57153126T>C, NC_000013.10:g.57727260T>C

Select item 137484492112.

rs1374844921 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:57152968 (GRCh38)
13:57727102 (GRCh37)
Canonical SPDI:: NC_000013.11:57152967:G:A
Gene:: PRR20C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.05901/700 (ALFA)
A=0.00111/2 (TOMMO)
A=0.09343/37 (KOREAN)
HGVS:: NC_000013.11:g.57152968G>A, NC_000013.10:g.57727102G>A, NG_080001.1:g.414G>A

Select item 136665863913.

rs1366658639 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 13:57152886 (GRCh38)
13:57727020 (GRCh37)
Canonical SPDI:: NC_000013.11:57152885:C:A
Gene:: PRR20C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.10934/1297 (ALFA)
C=0.08333/1 (SGDP_PRJ)
HGVS:: NC_000013.11:g.57152886C>A, NC_000013.10:g.57727020C>A, NG_080001.1:g.332C>A

Select item 134956099014.

rs1349560990 [Homo sapiens]

Variant type:: SNV:
Alleles:: GCCC>-
Chromosome:: no mapping
Canonical SPDI:

Select item 133833612415.

rs1338336124 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTC>- [Show Flanks]
Chromosome:: 13:57154522 (GRCh38)
13:57728656 (GRCh37)
Canonical SPDI:: NC_000013.11:57154518:CTCCTC:CTC
Gene:: PRR20C (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000013.11:g.57154519CTC[1], NC_000013.10:g.57728653CTC[1]

Select item 133616717416.

rs1336167174 [Homo sapiens]

Variant type:: INS
Alleles:: ->AA [Show Flanks]
Chromosome:: 13:57152890 (GRCh38)
13:57727025 (GRCh37)
Canonical SPDI:: NC_000013.11:57152890::AA
Gene:: PRR20C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: AA=0.00177/21 (ALFA)
AA=0.00147/2 (TOMMO)
HGVS:: NC_000013.11:g.57152890_57152891insAA, NC_000013.10:g.57727024_57727025insAA, NG_080001.1:g.336_337insAA

Select item 133345443117.

rs1333454431 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 13:57152955 (GRCh38)
13:57727089 (GRCh37)
Canonical SPDI:: NC_000013.11:57152954:C:A
Gene:: PRR20C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00497/59 (ALFA)
C=0./0 (SGDP_PRJ)
A=0.08065/35 (KOREAN)
HGVS:: NC_000013.11:g.57152955C>A, NC_000013.10:g.57727089C>A, NG_080001.1:g.401C>A

Select item 131151925718.

rs1311519257 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:57153338 (GRCh38)
13:57727472 (GRCh37)
Canonical SPDI:: NC_000013.11:57153337:T:C
Gene:: PRR20C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.3842/5398 (ALFA)
T=0./0 (SGDP_PRJ)
HGVS:: NC_000013.11:g.57153338T>C, NC_000013.10:g.57727472T>C

Select item 130535030919.

rs1305350309 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:57152871 (GRCh38)
13:57727005 (GRCh37)
Canonical SPDI:: NC_000013.11:57152870:G:C
Gene:: PRR20C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00272/29 (ALFA)
C=0.105/21 (KOREAN)
HGVS:: NC_000013.11:g.57152871G>C, NC_000013.10:g.57727005G>C, NG_080001.1:g.317G>C

Select item 128851579820.

rs1288515798 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 13:57152909 (GRCh38)
13:57727043 (GRCh37)
Canonical SPDI:: NC_000013.11:57152908:C:G
Gene:: PRR20C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.00034/4 (ALFA)
HGVS:: NC_000013.11:g.57152909C>G, NC_000013.10:g.57727043C>G, NG_080001.1:g.355C>G

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