SNP Links for Gene (Select 730109) - SNP

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Items: 1 to 20 of 3253

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Select item 14915526361.

rs1491552636 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: 3:160020121 (GRCh38)
3:159737908 (GRCh37)
Canonical SPDI:: NC_000003.12:160020120:AA:
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000003.12:g.160020121_160020122del, NC_000003.11:g.159737908_159737909del

Select item 14911685672.

rs1491168567 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CGAG,CGAGCGAG,CGAGCGAGCGAG [Show Flanks]
Chromosome:: 3:160020121 (GRCh38)
3:159737909 (GRCh37)
Canonical SPDI:: NC_000003.12:160020121:AGCGAG:AGCGAGCGAG,NC_000003.12:160020121:AGCGAG:AGCGAGCGAGCGAG,NC_000003.12:160020121:AGCGAG:AGCGAGCGAGCGAGCGAG
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGCGAGCGAGCGAGCGAG=0./0 (ALFA)
HGVS:: NC_000003.12:g.160020124_160020127dup, NC_000003.12:g.160020124CGAG[3], NC_000003.12:g.160020124CGAG[4], NC_000003.11:g.159737911_159737914dup, NC_000003.11:g.159737911CGAG[3], NC_000003.11:g.159737911CGAG[4]

Select item 14910523363.

rs1491052336 [Homo sapiens]

Variant type:: DELINS
Alleles:: CG>- [Show Flanks]
Chromosome:: 3:160020124 (GRCh38)
3:159737911 (GRCh37)
Canonical SPDI:: NC_000003.12:160020122:GCG:G
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000003.12:g.160020124_160020125del, NC_000003.11:g.159737911_159737912del

Select item 14910486504.

rs1491048650 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>-,GAGA [Show Flanks]
Chromosome:: 3:160019959 (GRCh38)
3:159737746 (GRCh37)
Canonical SPDI:: NC_000003.12:160019957:AGA:A,NC_000003.12:160019957:AGA:AGAGA
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: AGAGA=0./0 (ALFA)
-=0.0008/2 (GnomAD)
HGVS:: NC_000003.12:g.160019959_160019960del, NC_000003.12:g.160019959_160019960dup, NC_000003.11:g.159737746_159737747del, NC_000003.11:g.159737746_159737747dup

Select item 14904627255.

rs1490462725 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:160029947 (GRCh38)
3:159747734 (GRCh37)
Canonical SPDI:: NC_000003.12:160029946:A:G
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.160029947A>G, NC_000003.11:g.159747734A>G

Select item 14901642786.

rs1490164278 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:160030013 (GRCh38)
3:159747800 (GRCh37)
Canonical SPDI:: NC_000003.12:160030012:C:T
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000003.12:g.160030013C>T, NC_000003.11:g.159747800C>T

Select item 14901347427.

rs1490134742 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:160028058 (GRCh38)
3:159745845 (GRCh37)
Canonical SPDI:: NC_000003.12:160028057:T:C
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000054/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000093/13 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000003.12:g.160028058T>C, NC_000003.11:g.159745845T>C

Select item 14900555018.

rs1490055501 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:160024045 (GRCh38)
3:159741832 (GRCh37)
Canonical SPDI:: NC_000003.12:160024044:A:G
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.160024045A>G, NC_000003.11:g.159741832A>G

Select item 14900405649.

rs1490040564 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:160023117 (GRCh38)
3:159740904 (GRCh37)
Canonical SPDI:: NC_000003.12:160023116:G:A
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.160023117G>A, NC_000003.11:g.159740904G>A

Select item 148967471210.

rs1489674712 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G,T [Show Flanks]
Chromosome:: 3:160020001 (GRCh38)
3:159737788 (GRCh37)
Canonical SPDI:: NC_000003.12:160020000:A:C,NC_000003.12:160020000:A:G,NC_000003.12:160020000:A:T
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00185/3 (Korea1K)
G=0.00461/75 (GnomAD)
G=0.00765/22 (KOREAN)
G=0.00841/124 (TOMMO)
A=0.5/2 (SGDP_PRJ)
HGVS:: NC_000003.12:g.160020001A>C, NC_000003.12:g.160020001A>G, NC_000003.12:g.160020001A>T, NC_000003.11:g.159737788A>C, NC_000003.11:g.159737788A>G, NC_000003.11:g.159737788A>T

Select item 148942204011.

rs1489422040 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 3:160031535 (GRCh38)
3:159749322 (GRCh37)
Canonical SPDI:: NC_000003.12:160031534:G:C
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview), LOC124906252 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.160031535G>C, NC_000003.11:g.159749322G>C

Select item 148937803512.

rs1489378035 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 3:160019991 (GRCh38)
3:159737778 (GRCh37)
Canonical SPDI:: NC_000003.12:160019990:G:A,NC_000003.12:160019990:G:C,NC_000003.12:160019990:G:T
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.01465/42 (KOREAN)
HGVS:: NC_000003.12:g.160019991G>A, NC_000003.12:g.160019991G>C, NC_000003.12:g.160019991G>T, NC_000003.11:g.159737778G>A, NC_000003.11:g.159737778G>C, NC_000003.11:g.159737778G>T

Select item 148896244613.

rs1488962446 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 3:160026654 (GRCh38)
3:159744441 (GRCh37)
Canonical SPDI:: NC_000003.12:160026653:G:A,NC_000003.12:160026653:G:C
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/2 (GnomAD_exomes)
HGVS:: NC_000003.12:g.160026654G>A, NC_000003.12:g.160026654G>C, NC_000003.11:g.159744441G>A, NC_000003.11:g.159744441G>C, NR_104132.1:n.141G>A, NR_104132.1:n.141G>C

Select item 148894040714.

rs1488940407 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 3:160020619 (GRCh38)
3:159738406 (GRCh37)
Canonical SPDI:: NC_000003.12:160020618:C:A,NC_000003.12:160020618:C:T
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.160020619C>A, NC_000003.12:g.160020619C>T, NC_000003.11:g.159738406C>A, NC_000003.11:g.159738406C>T

Select item 148874942715.

rs1488749427 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:160027785 (GRCh38)
3:159745572 (GRCh37)
Canonical SPDI:: NC_000003.12:160027784:A:G
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.160027785A>G, NC_000003.11:g.159745572A>G

Select item 148844547216.

rs1488445472 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:160022187 (GRCh38)
3:159739974 (GRCh37)
Canonical SPDI:: NC_000003.12:160022186:C:T
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000019/5 (TOPMED)
T=0.000035/1 (TOMMO)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000003.12:g.160022187C>T, NC_000003.11:g.159739974C>T

Select item 148842688617.

rs1488426886 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:160026741 (GRCh38)
3:159744528 (GRCh37)
Canonical SPDI:: NC_000003.12:160026740:C:T
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
HGVS:: NC_000003.12:g.160026741C>T, NC_000003.11:g.159744528C>T, NR_104132.1:n.228C>T

Select item 148834626218.

rs1488346262 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:160020536 (GRCh38)
3:159738323 (GRCh37)
Canonical SPDI:: NC_000003.12:160020535:C:T
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.160020536C>T, NC_000003.11:g.159738323C>T

Select item 148824001019.

rs1488240010 has merged into rs1293150920 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA [Show Flanks]
Chromosome:: 3:160019953 (GRCh38)
3:159737740 (GRCh37)
Canonical SPDI:: NC_000003.12:160019951:AAA:A,NC_000003.12:160019951:AAA:AA,NC_000003.12:160019951:AAA:AAAA
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
-=0.00015/1 (TOMMO)
HGVS:: NC_000003.12:g.160019953_160019954del, NC_000003.12:g.160019954del, NC_000003.12:g.160019954dup, NC_000003.11:g.159737740_159737741del, NC_000003.11:g.159737741del, NC_000003.11:g.159737741dup

Select item 148817282120.

rs1488172821 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 3:160019052 (GRCh38)
3:159736839 (GRCh37)
Canonical SPDI:: NC_000003.12:160019051:A:T
Gene:: LINC01100 (Varview), IL12A-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.160019052A>T, NC_000003.11:g.159736839A>T

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