SNP Links for Gene (Select 7472) - SNP

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Select item 14915481811.

rs1491548181 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 7:117319523 (GRCh38)
7:116959578 (GRCh37)
Canonical SPDI:: NC_000007.14:117319523::C
Gene:: WNT2 (Varview), LOC105375467 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000038/2 (GnomAD)
HGVS:: NC_000007.14:g.117319523_117319524insC, NC_000007.13:g.116959577_116959578insC

Select item 14914916312.

rs1491491631 has merged into rs67181334 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGG>-,G,GG,GGGG,GGGGG,GGGGGG [Show Flanks]
Chromosome:: 7:117319531 (GRCh38)
7:116959585 (GRCh37)
Canonical SPDI:: NC_000007.14:117319522:GGGGGGGGGGG:GGGGGGGG,NC_000007.14:117319522:GGGGGGGGGGG:GGGGGGGGG,NC_000007.14:117319522:GGGGGGGGGGG:GGGGGGGGGG,NC_000007.14:117319522:GGGGGGGGGGG:GGGGGGGGGGGG,NC_000007.14:117319522:GGGGGGGGGGG:GGGGGGGGGGGGG,NC_000007.14:117319522:GGGGGGGGGGG:GGGGGGGGGGGGGG
Gene:: WNT2 (Varview), LOC105375467 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGGGGGGGG=0.0002/2 (ALFA)
-=0.45/18 (GENOME_DK)
HGVS:: NC_000007.14:g.117319531_117319533del, NC_000007.14:g.117319532_117319533del, NC_000007.14:g.117319533del, NC_000007.14:g.117319533dup, NC_000007.14:g.117319532_117319533dup, NC_000007.14:g.117319531_117319533dup, NC_000007.13:g.116959585_116959587del, NC_000007.13:g.116959586_116959587del, NC_000007.13:g.116959587del, NC_000007.13:g.116959587dup, NC_000007.13:g.116959586_116959587dup, NC_000007.13:g.116959585_116959587dup

Select item 14912723543.

rs1491272354 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 7:117304432 (GRCh38)
7:116944486 (GRCh37)
Canonical SPDI:: NC_000007.14:117304431:AT:
Gene:: WNT2 (Varview), LOC105375467 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000007.14:g.117304432_117304433del, NC_000007.13:g.116944486_116944487del

Select item 14910389864.

rs1491038986 [Homo sapiens]

Variant type:: DELINS
Alleles:: TC>- [Show Flanks]
Chromosome:: 7:117286792 (GRCh38)
7:116926846 (GRCh37)
Canonical SPDI:: NC_000007.14:117286789:TCTC:TC
Gene:: WNT2 (Varview), LOC124900596 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCTC=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.117286790TC[1], NC_000007.13:g.116926844TC[1], NG_061709.1:g.688TC[1]

Select item 14908593125.

rs1490859312 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:117297454 (GRCh38)
7:116937508 (GRCh37)
Canonical SPDI:: NC_000007.14:117297453:G:A
Gene:: WNT2 (Varview), LOC124900596 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000106/2 (TOMMO)
HGVS:: NC_000007.14:g.117297454G>A, NC_000007.13:g.116937508G>A

Select item 14908008336.

rs1490800833 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:117289682 (GRCh38)
7:116929736 (GRCh37)
Canonical SPDI:: NC_000007.14:117289681:T:C
Gene:: WNT2 (Varview), LOC124900596 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000007.14:g.117289682T>C, NC_000007.13:g.116929736T>C

Select item 14907424877.

rs1490742487 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 7:117323699 (GRCh38)
7:116963753 (GRCh37)
Canonical SPDI:: NC_000007.14:117323698:G:C
Gene:: WNT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.117323699G>C, NC_000007.13:g.116963753G>C

Select item 14907369528.

rs1490736952 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 7:117307588 (GRCh38)
7:116947642 (GRCh37)
Canonical SPDI:: NC_000007.14:117307587:A:C
Gene:: WNT2 (Varview), LOC105375467 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000007.14:g.117307588A>C, NC_000007.13:g.116947642A>C

Select item 14906854419.

rs1490685441 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:117306573 (GRCh38)
7:116946627 (GRCh37)
Canonical SPDI:: NC_000007.14:117306572:T:C
Gene:: WNT2 (Varview), LOC105375467 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.117306573T>C, NC_000007.13:g.116946627T>C

Select item 149065517210.

rs1490655172 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 7:117317314 (GRCh38)
7:116957368 (GRCh37)
Canonical SPDI:: NC_000007.14:117317313:G:T
Gene:: WNT2 (Varview), LOC105375467 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.117317314G>T, NC_000007.13:g.116957368G>T

Select item 149063726811.

rs1490637268 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:117289214 (GRCh38)
7:116929268 (GRCh37)
Canonical SPDI:: NC_000007.14:117289213:C:T
Gene:: WNT2 (Varview), LOC124900596 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000029/4 (GnomAD)
T=0.00003/8 (TOPMED)
HGVS:: NC_000007.14:g.117289214C>T, NC_000007.13:g.116929268C>T

Select item 149057328912.

rs1490573289 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 7:117324203 (GRCh38)
7:116964257 (GRCh37)
Canonical SPDI:: NC_000007.14:117324202:G:T
Gene:: WNT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.117324203G>T, NC_000007.13:g.116964257G>T

Select item 149053552313.

rs1490535523 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:117304702 (GRCh38)
7:116944756 (GRCh37)
Canonical SPDI:: NC_000007.14:117304701:C:T
Gene:: WNT2 (Varview), LOC105375467 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.117304702C>T, NC_000007.13:g.116944756C>T

Select item 149046583414.

rs1490465834 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 7:117324127 (GRCh38)
7:116964181 (GRCh37)
Canonical SPDI:: NC_000007.14:117324126:G:C,NC_000007.14:117324126:G:T
Gene:: WNT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000015/4 (TOPMED)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000007.14:g.117324127G>C, NC_000007.14:g.117324127G>T, NC_000007.13:g.116964181G>C, NC_000007.13:g.116964181G>T

Select item 149041938615.

rs1490419386 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:117298961 (GRCh38)
7:116939015 (GRCh37)
Canonical SPDI:: NC_000007.14:117298960:T:C
Gene:: WNT2 (Varview), LOC105375467 (Varview), LOC124900596 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.117298961T>C, NC_000007.13:g.116939015T>C

Select item 149040127616.

rs1490401276 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 7:117297932 (GRCh38)
7:116937987 (GRCh37)
Canonical SPDI:: NC_000007.14:117297932:AA:AAA
Gene:: WNT2 (Varview), LOC124900596 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AAA=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.117297934dup, NC_000007.13:g.116937988dup

Select item 149031392417.

rs1490313924 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 7:117290177 (GRCh38)
7:116930231 (GRCh37)
Canonical SPDI:: NC_000007.14:117290176:C:A
Gene:: WNT2 (Varview), LOC124900596 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.117290177C>A, NC_000007.13:g.116930231C>A

Select item 149024584318.

rs1490245843 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:117308274 (GRCh38)
7:116948328 (GRCh37)
Canonical SPDI:: NC_000007.14:117308273:T:C
Gene:: WNT2 (Varview), LOC105375467 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.117308274T>C, NC_000007.13:g.116948328T>C

Select item 149021031719.

rs1490210317 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:117319377 (GRCh38)
7:116959431 (GRCh37)
Canonical SPDI:: NC_000007.14:117319376:G:A
Gene:: WNT2 (Varview), LOC105375467 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: A=0.000021/3 (GnomAD)
HGVS:: NC_000007.14:g.117319377G>A, NC_000007.13:g.116959431G>A

Select item 149020644920.

rs1490206449 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:117291497 (GRCh38)
7:116931551 (GRCh37)
Canonical SPDI:: NC_000007.14:117291496:C:T
Gene:: WNT2 (Varview), LOC124900596 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.117291497C>T, NC_000007.13:g.116931551C>T

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