SNP Links for Gene (Select 7782) - SNP

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Select item 14915891681.

rs1491589168 has merged into rs751585996 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTTT>-,TTT,TTTT,TTTTT,TTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 15:45514520 (GRCh38)
15:45806718 (GRCh37)
Canonical SPDI:: NC_000015.10:45514510:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000015.10:45514510:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000015.10:45514510:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000015.10:45514510:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000015.10:45514510:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000015.10:45514510:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000015.10:45514510:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000015.10:45514510:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000015.10:45514510:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000015.10:45514510:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:45514510:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:45514510:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:45514510:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:45514510:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:45514510:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:45514510:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: SLC30A4 (Varview), HMGN2P46 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000015.10:g.45514520_45514532del, NC_000015.10:g.45514523_45514532del, NC_000015.10:g.45514524_45514532del, NC_000015.10:g.45514525_45514532del, NC_000015.10:g.45514526_45514532del, NC_000015.10:g.45514529_45514532del, NC_000015.10:g.45514530_45514532del, NC_000015.10:g.45514531_45514532del, NC_000015.10:g.45514532del, NC_000015.10:g.45514532dup, NC_000015.10:g.45514531_45514532dup, NC_000015.10:g.45514530_45514532dup, NC_000015.10:g.45514529_45514532dup, NC_000015.10:g.45514528_45514532dup, NC_000015.10:g.45514532_45514533insTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000015.10:g.45514532_45514533insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000015.9:g.45806718_45806730del, NC_000015.9:g.45806721_45806730del, NC_000015.9:g.45806722_45806730del, NC_000015.9:g.45806723_45806730del, NC_000015.9:g.45806724_45806730del, NC_000015.9:g.45806727_45806730del, NC_000015.9:g.45806728_45806730del, NC_000015.9:g.45806729_45806730del, NC_000015.9:g.45806730del, NC_000015.9:g.45806730dup, NC_000015.9:g.45806729_45806730dup, NC_000015.9:g.45806728_45806730dup, NC_000015.9:g.45806727_45806730dup, NC_000015.9:g.45806726_45806730dup, NC_000015.9:g.45806730_45806731insTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000015.9:g.45806730_45806731insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Select item 14915890502.

rs1491589050 [Homo sapiens]

Variant type:: INS
Alleles:: ->T [Show Flanks]
Chromosome:: 15:45482428 (GRCh38)
15:45774627 (GRCh37)
Canonical SPDI:: NC_000015.10:45482428::T
Gene:: SLC30A4 (Varview), LOC105376714 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.45482428_45482429insT, NC_000015.9:g.45774626_45774627insT, NM_013309.6:c.*2734_*2735insA, NM_013309.5:c.*2734_*2735insA, XM_017022560.3:c.*2734_*2735insA, XM_017022560.1:c.*2734_*2735insA

Select item 14914830563.

rs1491483056 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AG [Show Flanks]
Chromosome:: 15:45487910 (GRCh38)
15:45780109 (GRCh37)
Canonical SPDI:: NC_000015.10:45487910:AG:AGAG
Gene:: SLC30A4 (Varview), LOC105376714 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAG=0./0 (ALFA)
AG=0.00004/3 (GnomAD)
AG=0.00047/3 (1000Genomes)
HGVS:: NC_000015.10:g.45487911_45487912dup, NC_000015.9:g.45780109_45780110dup

Select item 14913724324.

rs1491372432 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: 15:45487910 (GRCh38)
15:45780108 (GRCh37)
Canonical SPDI:: NC_000015.10:45487909:AA:
Gene:: SLC30A4 (Varview), LOC105376714 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.000084/1 (ALFA)
-=0.000035/4 (GnomAD)
HGVS:: NC_000015.10:g.45487910_45487911del, NC_000015.9:g.45780108_45780109del

Select item 14913712215.

rs1491371221 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:45492212 (GRCh38)
15:45784410 (GRCh37)
Canonical SPDI:: NC_000015.10:45492211:CA:
Gene:: SLC30A4 (Varview), LOC105376714 (Varview), LOC124903596 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_downstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000132/15 (GnomAD)
HGVS:: NC_000015.10:g.45492212_45492213del, NC_000015.9:g.45784410_45784411del

Select item 14913698316.

rs1491369831 [Homo sapiens]

Variant type:: SNV:
Alleles:: AT>-
Chromosome:: no mapping
Canonical SPDI:

Select item 14913489527.

rs1491348952 [Homo sapiens]

Variant type:: INS
Alleles:: ->CC [Show Flanks]
Chromosome:: 15:45514538 (GRCh38)
15:45806737 (GRCh37)
Canonical SPDI:: NC_000015.10:45514538::CC
Gene:: SLC30A4 (Varview), HMGN2P46 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0.000084/1 (ALFA)
CC=0.000048/6 (GnomAD)
HGVS:: NC_000015.10:g.45514538_45514539insCC, NC_000015.9:g.45806736_45806737insCC

Select item 14913332358.

rs1491333235 [Homo sapiens]

Variant type:: DELINS
Alleles:: AG>- [Show Flanks]
Chromosome:: 15:45514540 (GRCh38)
15:45806738 (GRCh37)
Canonical SPDI:: NC_000015.10:45514537:AGAG:AG
Gene:: SLC30A4 (Varview), HMGN2P46 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AGAG=0./0 (ALFA)
-=0.000055/6 (GnomAD)
HGVS:: NC_000015.10:g.45514538AG[1], NC_000015.9:g.45806736AG[1]

Select item 14913004769.

rs1491300476 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:45514361 (GRCh38)
15:45806559 (GRCh37)
Canonical SPDI:: NC_000015.10:45514360:CA:
Gene:: SLC30A4 (Varview), HMGN2P46 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00017/2 (ALFA)
HGVS:: NC_000015.10:g.45514361_45514362del, NC_000015.9:g.45806559_45806560del

Select item 149127368910.

rs1491273689 has merged into rs77966458 [Homo sapiens]

Variant type:: DELINS
Alleles:: TAAATAAATAAATAAATAAA>-,TAAA,TAAATAAA,TAAATAAATAAA,TAAATAAATAAATAAA,TAAATAAATAAATAAATAAATAAA,TAAATAAATAAATAAATAAATAAATAAA,TAAATAAATAAATAAATAAATAAATAAATAAA,TAAATAAATAAATAAATAAATAAATAAATAAATAAA [Show Flanks]
Chromosome:: 15:45496858 (GRCh38)
15:45789056 (GRCh37)
Canonical SPDI:: NC_000015.10:45496836:ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA:ATAAATAAATAAATAAATAAA,NC_000015.10:45496836:ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA:ATAAATAAATAAATAAATAAATAAA,NC_000015.10:45496836:ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA:ATAAATAAATAAATAAATAAATAAATAAA,NC_000015.10:45496836:ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA:ATAAATAAATAAATAAATAAATAAATAAATAAA,NC_000015.10:45496836:ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA:ATAAATAAATAAATAAATAAATAAATAAATAAATAAA,NC_000015.10:45496836:ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA:ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA,NC_000015.10:45496836:ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA:ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA,NC_000015.10:45496836:ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA:ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA,NC_000015.10:45496836:ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA:ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA
Gene:: SLC30A4 (Varview), LOC105376714 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATAAATAAATAAATAAATAAATAAA=0./0 (ALFA)
ATAA=0.3341/1673 (1000Genomes)
HGVS:: NC_000015.10:g.45496838TAAA[5], NC_000015.10:g.45496838TAAA[6], NC_000015.10:g.45496838TAAA[7], NC_000015.10:g.45496838TAAA[8], NC_000015.10:g.45496838TAAA[9], NC_000015.10:g.45496838TAAA[11], NC_000015.10:g.45496838TAAA[12], NC_000015.10:g.45496838TAAA[13], NC_000015.10:g.45496838TAAA[14], NC_000015.9:g.45789036TAAA[5], NC_000015.9:g.45789036TAAA[6], NC_000015.9:g.45789036TAAA[7], NC_000015.9:g.45789036TAAA[8], NC_000015.9:g.45789036TAAA[9], NC_000015.9:g.45789036TAAA[11], NC_000015.9:g.45789036TAAA[12], NC_000015.9:g.45789036TAAA[13], NC_000015.9:g.45789036TAAA[14]

Select item 149126419111.

rs1491264191 has merged into rs1163243140 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAA>-,AA,AAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAATCTGGAGAAAACCCAAAAGTCCACCCCAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 15:45492223 (GRCh38)
15:45784421 (GRCh37)
Canonical SPDI:: NC_000015.10:45492212:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000015.10:45492212:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:45492212:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000015.10:45492212:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:45492212:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000015.10:45492212:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000015.10:45492212:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000015.10:45492212:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000015.10:45492212:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000015.10:45492212:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:45492212:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:45492212:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:45492212:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAATCTGGAGAAAACCCAAAAGTCCACCCCAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: SLC30A4 (Varview), LOC105376714 (Varview), LOC124903596 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000015.10:g.45492223_45492231del, NC_000015.10:g.45492225_45492231del, NC_000015.10:g.45492226_45492231del, NC_000015.10:g.45492228_45492231del, NC_000015.10:g.45492229_45492231del, NC_000015.10:g.45492230_45492231del, NC_000015.10:g.45492231del, NC_000015.10:g.45492231dup, NC_000015.10:g.45492230_45492231dup, NC_000015.10:g.45492229_45492231dup, NC_000015.10:g.45492228_45492231dup, NC_000015.10:g.45492219_45492231dup, NC_000015.10:g.45492213_45492231A[20]TCTGGAGAAAACCCAAAAGTCCACCCCAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA[1], NC_000015.9:g.45784421_45784429del, NC_000015.9:g.45784423_45784429del, NC_000015.9:g.45784424_45784429del, NC_000015.9:g.45784426_45784429del, NC_000015.9:g.45784427_45784429del, NC_000015.9:g.45784428_45784429del, NC_000015.9:g.45784429del, NC_000015.9:g.45784429dup, NC_000015.9:g.45784428_45784429dup, NC_000015.9:g.45784427_45784429dup, NC_000015.9:g.45784426_45784429dup, NC_000015.9:g.45784417_45784429dup, NC_000015.9:g.45784411_45784429A[20]TCTGGAGAAAACCCAAAAGTCCACCCCAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA[1]

Select item 149119855612.

rs1491198556 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 15:45482056 (GRCh38)
15:45774254 (GRCh37)
Canonical SPDI:: NC_000015.10:45482055:TT:T,NC_000015.10:45482055:TT:TTT
Gene:: SLC30A4 (Varview), LOC105376714 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TTT=0./0 (ALFA)
-=0.00003/2 (GnomAD)
HGVS:: NC_000015.10:g.45482057del, NC_000015.10:g.45482057dup, NC_000015.9:g.45774255del, NC_000015.9:g.45774255dup, NM_013309.6:c.*3107del, NM_013309.6:c.*3107dup, NM_013309.5:c.*3107del, NM_013309.5:c.*3107dup, XM_017022560.3:c.*3107del, XM_017022560.3:c.*3107dup, XM_017022560.1:c.*3107del, XM_017022560.1:c.*3107dup

Select item 149110580113.

rs1491105801 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->G
Chromosome:: no mapping
Canonical SPDI:

Select item 149110115714.

rs1491101157 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 15:45482429 (GRCh38)
15:45774627 (GRCh37)
Canonical SPDI:: NC_000015.10:45482427:AGA:A
Gene:: SLC30A4 (Varview), LOC105376714 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000015.10:g.45482429_45482430del, NC_000015.9:g.45774627_45774628del, NM_013309.6:c.*2734_*2735del, NM_013309.5:c.*2734_*2735del, XM_017022560.3:c.*2734_*2735del, XM_017022560.1:c.*2734_*2735del

Select item 149084848915.

rs1490848489 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:45519068 (GRCh38)
15:45811266 (GRCh37)
Canonical SPDI:: NC_000015.10:45519067:A:C
Gene:: SLC30A4 (Varview), HMGN2P46 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.45519068A>C, NC_000015.9:g.45811266A>C

Select item 149083467616.

rs1490834676 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:45486240 (GRCh38)
15:45778438 (GRCh37)
Canonical SPDI:: NC_000015.10:45486239:C:T
Gene:: SLC30A4 (Varview), LOC105376714 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.45486240C>T, NC_000015.9:g.45778438C>T

Select item 149067168117.

rs1490671681 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:45486941 (GRCh38)
15:45779139 (GRCh37)
Canonical SPDI:: NC_000015.10:45486940:G:A
Gene:: SLC30A4 (Varview), LOC105376714 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.45486941G>A, NC_000015.9:g.45779139G>A

Select item 149054731818.

rs1490547318 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:45498203 (GRCh38)
15:45790401 (GRCh37)
Canonical SPDI:: NC_000015.10:45498202:T:C
Gene:: SLC30A4 (Varview), LOC105376714 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000015.10:g.45498203T>C, NC_000015.9:g.45790401T>C, XR_007064611.1:n.3004T>C

Select item 149048152819.

rs1490481528 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:45511567 (GRCh38)
15:45803765 (GRCh37)
Canonical SPDI:: NC_000015.10:45511566:T:C
Gene:: SLC30A4 (Varview), HMGN2P46 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.45511567T>C, NC_000015.9:g.45803765T>C

Select item 149048035320.

rs1490480353 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:45515197 (GRCh38)
15:45807395 (GRCh37)
Canonical SPDI:: NC_000015.10:45515196:C:T
Gene:: SLC30A4 (Varview), HMGN2P46 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.00098/16 (ALFA)
HGVS:: NC_000015.10:g.45515197C>T, NC_000015.9:g.45807395C>T

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