SNP Links for Gene (Select 79414) - SNP

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Links from Gene

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Select item 14908558791.

rs1490855879 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:35941807 (GRCh38)
19:36432709 (GRCh37)
Canonical SPDI:: NC_000019.10:35941806:C:A
Gene:: LRFN3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000019.10:g.35941807C>A, NC_000019.9:g.36432709C>A

Select item 14900070232.

rs1490007023 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:35943555 (GRCh38)
19:36434457 (GRCh37)
Canonical SPDI:: NC_000019.10:35943554:G:C
Gene:: LRFN3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.35943555G>C, NC_000019.9:g.36434457G>C

Select item 14900069083.

rs1490006908 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:35945175 (GRCh38)
19:36436077 (GRCh37)
Canonical SPDI:: NC_000019.10:35945174:A:G
Gene:: LRFN3 (Varview), LOC105372383 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.35945175A>G, NC_000019.9:g.36436077A>G, NM_024509.2:c.*156A>G, NM_024509.1:c.*156A>G

Select item 14898713354.

rs1489871335 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:35942654 (GRCh38)
19:36433556 (GRCh37)
Canonical SPDI:: NC_000019.10:35942653:G:T
Gene:: LRFN3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.35942654G>T, NC_000019.9:g.36433556G>T

Select item 14898036605.

rs1489803660 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:35936118 (GRCh38)
19:36427020 (GRCh37)
Canonical SPDI:: NC_000019.10:35936117:T:C
Gene:: LRFN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.35936118T>C, NC_000019.9:g.36427020T>C

Select item 14892991976.

rs1489299197 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:35935785 (GRCh38)
19:36426687 (GRCh37)
Canonical SPDI:: NC_000019.10:35935784:A:G
Gene:: LRFN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0./0 (GnomAD)
HGVS:: NC_000019.10:g.35935785A>G, NC_000019.9:g.36426687A>G

Select item 14892358497.

rs1489235849 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:35944080 (GRCh38)
19:36434982 (GRCh37)
Canonical SPDI:: NC_000019.10:35944079:C:T
Gene:: LRFN3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.35944080C>T, NC_000019.9:g.36434982C>T

Select item 14886635348.

rs1488663534 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:35944224 (GRCh38)
19:36435126 (GRCh37)
Canonical SPDI:: NC_000019.10:35944223:G:T
Gene:: LRFN3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.35944224G>T, NC_000019.9:g.36435126G>T

Select item 14883887969.

rs1488388796 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:35937481 (GRCh38)
19:36428383 (GRCh37)
Canonical SPDI:: NC_000019.10:35937480:A:G
Gene:: LRFN3 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.35937481A>G, NC_000019.9:g.36428383A>G, NM_024509.2:c.-91A>G, NM_024509.1:c.-91A>G

Select item 148825639510.

rs1488256395 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:35942960 (GRCh38)
19:36433862 (GRCh37)
Canonical SPDI:: NC_000019.10:35942959:C:T
Gene:: LRFN3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000142/2 (ALFA)
T=0.000022/3 (GnomAD)
HGVS:: NC_000019.10:g.35942960C>T, NC_000019.9:g.36433862C>T

Select item 148798673311.

rs1487986733 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 19:35937630 (GRCh38)
19:36428532 (GRCh37)
Canonical SPDI:: NC_000019.10:35937629:C:G,NC_000019.10:35937629:C:T
Gene:: LRFN3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
HGVS:: NC_000019.10:g.35937630C>G, NC_000019.10:g.35937630C>T, NC_000019.9:g.36428532C>G, NC_000019.9:g.36428532C>T

Select item 148793436612.

rs1487934366 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGGG>- [Show Flanks]
Chromosome:: 19:35936487 (GRCh38)
19:36427389 (GRCh37)
Canonical SPDI:: NC_000019.10:35936483:GGGAGGG:GGG
Gene:: LRFN3 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: GGG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.35936487_35936490del, NC_000019.9:g.36427389_36427392del, NM_024509.2:c.-1085_-1082del

Select item 148773882413.

rs1487738824 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:35942929 (GRCh38)
19:36433831 (GRCh37)
Canonical SPDI:: NC_000019.10:35942928:T:C
Gene:: LRFN3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: C=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.35942929T>C, NC_000019.9:g.36433831T>C

Select item 148740685214.

rs1487406852 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 19:35937931 (GRCh38)
19:36428833 (GRCh37)
Canonical SPDI:: NC_000019.10:35937930:TTT:TT
Gene:: LRFN3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000034/9 (TOPMED)
-=0.000043/6 (GnomAD)
HGVS:: NC_000019.10:g.35937933del, NC_000019.9:g.36428835del

Select item 148727113315.

rs1487271133 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:35941960 (GRCh38)
19:36432862 (GRCh37)
Canonical SPDI:: NC_000019.10:35941959:G:A
Gene:: LRFN3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.35941960G>A, NC_000019.9:g.36432862G>A

Select item 148686085116.

rs1486860851 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:35937379 (GRCh38)
19:36428281 (GRCh37)
Canonical SPDI:: NC_000019.10:35937378:A:G
Gene:: LRFN3 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.35937379A>G, NC_000019.9:g.36428281A>G, NM_024509.2:c.-193A>G, NM_024509.1:c.-193A>G

Select item 148665816617.

rs1486658166 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 19:35942103 (GRCh38)
19:36433005 (GRCh37)
Canonical SPDI:: NC_000019.10:35942102:C:A,NC_000019.10:35942102:C:T
Gene:: LRFN3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000019.10:g.35942103C>A, NC_000019.10:g.35942103C>T, NC_000019.9:g.36433005C>A, NC_000019.9:g.36433005C>T

Select item 148642155518.

rs1486421555 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 19:35938453 (GRCh38)
19:36429356 (GRCh37)
Canonical SPDI:: NC_000019.10:35938453:T:TT
Gene:: LRFN3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.35938454dup, NC_000019.9:g.36429356dup

Select item 148628539919.

rs1486285399 [Homo sapiens]

Variant type:: DELINS
Alleles:: TGTTAAAATATATCAGGCTACAGGGCTAAAAAA>- [Show Flanks]
Chromosome:: 19:35941096 (GRCh38)
19:36431998 (GRCh37)
Canonical SPDI:: NC_000019.10:35941092:AAATGTTAAAATATATCAGGCTACAGGGCTAAAAAA:AAA
Gene:: LRFN3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.35941096_35941128del, NC_000019.9:g.36431998_36432030del

Select item 148558588720.

rs1485585887 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:35940541 (GRCh38)
19:36431443 (GRCh37)
Canonical SPDI:: NC_000019.10:35940540:T:C
Gene:: LRFN3 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.35940541T>C, NC_000019.9:g.36431443T>C, NM_024509.2:c.1116T>C, NM_024509.1:c.1116T>C