SNP Links for Gene (Select 79885) - SNP

Links from Gene

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Select item 14915053271.

rs1491505327 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 3:13504353 (GRCh38)
3:13545854 (GRCh37)
Canonical SPDI:: NC_000003.12:13504353:GGG:GGGG
Gene:: HDAC11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGG=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.13504356dup, NC_000003.11:g.13545856dup

Select item 14914774712.

rs1491477471 [Homo sapiens]

Variant type:: DEL
Alleles:: TG>- [Show Flanks]
Chromosome:: 3:13486595 (GRCh38)
3:13528095 (GRCh37)
Canonical SPDI:: NC_000003.12:13486594:TG:
Gene:: HDAC11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000028/3 (GnomAD)
HGVS:: NC_000003.12:g.13486595_13486596del, NC_000003.11:g.13528095_13528096del

Select item 14913944083.

rs1491394408 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T,TT,TTT [Show Flanks]
Chromosome:: 3:13486569 (GRCh38)
3:13528070 (GRCh37)
Canonical SPDI:: NC_000003.12:13486569:T:TT,NC_000003.12:13486569:T:TTT,NC_000003.12:13486569:T:TTTT
Gene:: HDAC11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
HGVS:: NC_000003.12:g.13486570dup, NC_000003.12:g.13486570_13486571insTT, NC_000003.12:g.13486570_13486571insTTT, NC_000003.11:g.13528070dup, NC_000003.11:g.13528070_13528071insTT, NC_000003.11:g.13528070_13528071insTTT

Select item 14913222474.

rs1491322247 [Homo sapiens]

Variant type:: INS
Alleles:: ->TGGAGAA [Show Flanks]
Chromosome:: 3:13486595 (GRCh38)
3:13528096 (GRCh37)
Canonical SPDI:: NC_000003.12:13486595::TGGAGAA
Gene:: HDAC11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TGGAGAA=0./0 (ALFA)
HGVS:: NC_000003.12:g.13486595_13486596insTGGAGAA, NC_000003.11:g.13528095_13528096insTGGAGAA

Select item 14913175535.

rs1491317553 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 3:13478897 (GRCh38)
3:13520397 (GRCh37)
Canonical SPDI:: NC_000003.12:13478896:CT:
Gene:: HDAC11 (Varview), HDAC11-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.13478897_13478898del, NC_000003.11:g.13520397_13520398del

Select item 14913018946.

rs1491301894 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: 3:13504353 (GRCh38)
3:13545853 (GRCh37)
Canonical SPDI:: NC_000003.12:13504352:AG:
Gene:: HDAC11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.13504353_13504354del, NC_000003.11:g.13545853_13545854del

Select item 14912925207.

rs1491292520 has merged into rs767002835 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 3:13486581 (GRCh38)
3:13528081 (GRCh37)
Canonical SPDI:: NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:13486571:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: HDAC11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
-=0.000026/7 (TOPMED)
-=0.3/12 (GENOME_DK)
HGVS:: NC_000003.12:g.13486581_13486595del, NC_000003.12:g.13486582_13486595del, NC_000003.12:g.13486583_13486595del, NC_000003.12:g.13486584_13486595del, NC_000003.12:g.13486585_13486595del, NC_000003.12:g.13486586_13486595del, NC_000003.12:g.13486587_13486595del, NC_000003.12:g.13486588_13486595del, NC_000003.12:g.13486589_13486595del, NC_000003.12:g.13486590_13486595del, NC_000003.12:g.13486591_13486595del, NC_000003.12:g.13486592_13486595del, NC_000003.12:g.13486593_13486595del, NC_000003.12:g.13486594_13486595del, NC_000003.12:g.13486595del, NC_000003.12:g.13486595dup, NC_000003.12:g.13486594_13486595dup, NC_000003.12:g.13486593_13486595dup, NC_000003.12:g.13486592_13486595dup, NC_000003.12:g.13486591_13486595dup, NC_000003.12:g.13486590_13486595dup, NC_000003.12:g.13486589_13486595dup, NC_000003.12:g.13486588_13486595dup, NC_000003.12:g.13486587_13486595dup, NC_000003.12:g.13486584_13486595dup, NC_000003.12:g.13486583_13486595dup, NC_000003.12:g.13486582_13486595dup, NC_000003.12:g.13486581_13486595dup, NC_000003.12:g.13486580_13486595dup, NC_000003.12:g.13486579_13486595dup, NC_000003.12:g.13486576_13486595dup, NC_000003.12:g.13486575_13486595dup, NC_000003.12:g.13486574_13486595dup, NC_000003.12:g.13486595_13486596insTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000003.12:g.13486595_13486596insTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000003.11:g.13528081_13528095del, NC_000003.11:g.13528082_13528095del, NC_000003.11:g.13528083_13528095del, NC_000003.11:g.13528084_13528095del, NC_000003.11:g.13528085_13528095del, NC_000003.11:g.13528086_13528095del, NC_000003.11:g.13528087_13528095del, NC_000003.11:g.13528088_13528095del, NC_000003.11:g.13528089_13528095del, NC_000003.11:g.13528090_13528095del, NC_000003.11:g.13528091_13528095del, NC_000003.11:g.13528092_13528095del, NC_000003.11:g.13528093_13528095del, NC_000003.11:g.13528094_13528095del, NC_000003.11:g.13528095del, NC_000003.11:g.13528095dup, NC_000003.11:g.13528094_13528095dup, NC_000003.11:g.13528093_13528095dup, NC_000003.11:g.13528092_13528095dup, NC_000003.11:g.13528091_13528095dup, NC_000003.11:g.13528090_13528095dup, NC_000003.11:g.13528089_13528095dup, NC_000003.11:g.13528088_13528095dup, NC_000003.11:g.13528087_13528095dup, NC_000003.11:g.13528084_13528095dup, NC_000003.11:g.13528083_13528095dup, NC_000003.11:g.13528082_13528095dup, NC_000003.11:g.13528081_13528095dup, NC_000003.11:g.13528080_13528095dup, NC_000003.11:g.13528079_13528095dup, NC_000003.11:g.13528076_13528095dup, NC_000003.11:g.13528075_13528095dup, NC_000003.11:g.13528074_13528095dup, NC_000003.11:g.13528095_13528096insTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000003.11:g.13528095_13528096insTTTTTTTTTTTTTTTTTTTTTTTTTTT

Select item 14912215208.

rs1491221520 [Homo sapiens]

Variant type:: DEL
Alleles:: GC>- [Show Flanks]
Chromosome:: 3:13497853 (GRCh38)
3:13539353 (GRCh37)
Canonical SPDI:: NC_000003.12:13497852:GC:
Gene:: HDAC11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000144/4 (TOMMO)
HGVS:: NC_000003.12:g.13497853_13497854del, NC_000003.11:g.13539353_13539354del

Select item 14912107229.

rs1491210722 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>-,GTGT [Show Flanks]
Chromosome:: 3:13486571 (GRCh38)
3:13528071 (GRCh37)
Canonical SPDI:: NC_000003.12:13486568:GTGT:GT,NC_000003.12:13486568:GTGT:GTGTGT
Gene:: HDAC11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GTGT=0./0 (ALFA)
HGVS:: NC_000003.12:g.13486569GT[1], NC_000003.12:g.13486569GT[3], NC_000003.11:g.13528069GT[1], NC_000003.11:g.13528069GT[3]

Select item 149119484010.

rs1491194840 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 3:13486267 (GRCh38)
3:13527767 (GRCh37)
Canonical SPDI:: NC_000003.12:13486266:CA:
Gene:: HDAC11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000003.12:g.13486267_13486268del, NC_000003.11:g.13527767_13527768del

Select item 149118092111.

rs1491180921 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GT [Show Flanks]
Chromosome:: 3:13486572 (GRCh38)
3:13528073 (GRCh37)
Canonical SPDI:: NC_000003.12:13486572:T:TGT
Gene:: HDAC11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TGT=0./0 (ALFA)
TG=0.00014/2 (GnomAD)
HGVS:: NC_000003.12:g.13486573_13486574insGT, NC_000003.11:g.13528073_13528074insGT

Select item 149083223812.

rs1490832238 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:13495250 (GRCh38)
3:13536750 (GRCh37)
Canonical SPDI:: NC_000003.12:13495249:C:T
Gene:: HDAC11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.13495250C>T, NC_000003.11:g.13536750C>T

Select item 149082001613.

rs1490820016 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 3:13488413 (GRCh38)
3:13529913 (GRCh37)
Canonical SPDI:: NC_000003.12:13488412:C:A
Gene:: HDAC11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000066/1 (ALFA)
A=0.000029/4 (GnomAD)
A=0.000156/1 (1000Genomes)
A=0.000223/1 (Estonian)
HGVS:: NC_000003.12:g.13488413C>A, NC_000003.11:g.13529913C>A

Select item 149070659514.

rs1490706595 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:13480453 (GRCh38)
3:13521953 (GRCh37)
Canonical SPDI:: NC_000003.12:13480452:G:T
Gene:: HDAC11 (Varview), HDAC11-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.13480453G>T, NC_000003.11:g.13521953G>T

Select item 149050545115.

rs1490505451 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:13486823 (GRCh38)
3:13528323 (GRCh37)
Canonical SPDI:: NC_000003.12:13486822:T:C
Gene:: HDAC11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000342/1 (KOREAN)
HGVS:: NC_000003.12:g.13486823T>C, NC_000003.11:g.13528323T>C

Select item 149026003216.

rs1490260032 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:13504325 (GRCh38)
3:13545825 (GRCh37)
Canonical SPDI:: NC_000003.12:13504324:C:T
Gene:: HDAC11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.13504325C>T, NC_000003.11:g.13545825C>T

Select item 149019093217.

rs1490190932 has merged into rs965572305 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAAAGAAA>-,GAAA,GAAAGAAAGAAA [Show Flanks]
Chromosome:: 3:13503573 (GRCh38)
3:13545073 (GRCh37)
Canonical SPDI:: NC_000003.12:13503564:GAAAGAAAGAAAGAAA:GAAAGAAA,NC_000003.12:13503564:GAAAGAAAGAAAGAAA:GAAAGAAAGAAA,NC_000003.12:13503564:GAAAGAAAGAAAGAAA:GAAAGAAAGAAAGAAAGAAA
Gene:: HDAC11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GAAAGAAAGAAA=0./0 (ALFA)
-=0.000042/11 (TOPMED)
HGVS:: NC_000003.12:g.13503565GAAA[2], NC_000003.12:g.13503565GAAA[3], NC_000003.12:g.13503565GAAA[5], NC_000003.11:g.13545065GAAA[2], NC_000003.11:g.13545065GAAA[3], NC_000003.11:g.13545065GAAA[5]

Select item 149001135018.

rs1490011350 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:13495687 (GRCh38)
3:13537187 (GRCh37)
Canonical SPDI:: NC_000003.12:13495686:G:A
Gene:: HDAC11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.13495687G>A, NC_000003.11:g.13537187G>A

Select item 148988592419.

rs1489885924 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:13480880 (GRCh38)
3:13522380 (GRCh37)
Canonical SPDI:: NC_000003.12:13480879:A:G
Gene:: HDAC11 (Varview), HDAC11-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000034/9 (TOPMED)
HGVS:: NC_000003.12:g.13480880A>G, NC_000003.11:g.13522380A>G

Select item 148979965320.

rs1489799653 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:13490152 (GRCh38)
3:13531652 (GRCh37)
Canonical SPDI:: NC_000003.12:13490151:C:T
Gene:: HDAC11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.13490152C>T, NC_000003.11:g.13531652C>T

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