SNP Links for Gene (Select 79946) - SNP

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Select item 14915731621.

rs1491573162 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 10:102453539 (GRCh38)
10:104213296 (GRCh37)
Canonical SPDI:: NC_000010.11:102453537:ACA:A
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00691/82 (ALFA)
-=0.0007/27 (GnomAD)
-=0.00156/26 (TOMMO)
HGVS:: NC_000010.11:g.102453539_102453540del, NC_000010.10:g.104213296_104213297del

Select item 14914584572.

rs1491458457 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 10:102452043 (GRCh38)
10:104211800 (GRCh37)
Canonical SPDI:: NC_000010.11:102452042:AT:
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000010.11:g.102452043_102452044del, NC_000010.10:g.104211800_104211801del

Select item 14912742313.

rs1491274231 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 10:102453538 (GRCh38)
10:104213296 (GRCh37)
Canonical SPDI:: NC_000010.11:102453538:C:CC
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
C=0.00002/1 (GnomAD)
HGVS:: NC_000010.11:g.102453539dup, NC_000010.10:g.104213296dup

Select item 14912166534.

rs1491216653 has merged into rs10706803 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 10:102452372 (GRCh38)
10:104212129 (GRCh37)
Canonical SPDI:: NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTT=0./0 (ALFA)
-=0.35/14 (GENOME_DK)
HGVS:: NC_000010.11:g.102452372_102452383del, NC_000010.11:g.102452373_102452383del, NC_000010.11:g.102452374_102452383del, NC_000010.11:g.102452375_102452383del, NC_000010.11:g.102452376_102452383del, NC_000010.11:g.102452378_102452383del, NC_000010.11:g.102452380_102452383del, NC_000010.11:g.102452381_102452383del, NC_000010.11:g.102452382_102452383del, NC_000010.11:g.102452383del, NC_000010.11:g.102452383dup, NC_000010.11:g.102452382_102452383dup, NC_000010.11:g.102452381_102452383dup, NC_000010.11:g.102452380_102452383dup, NC_000010.11:g.102452379_102452383dup, NC_000010.11:g.102452378_102452383dup, NC_000010.10:g.104212129_104212140del, NC_000010.10:g.104212130_104212140del, NC_000010.10:g.104212131_104212140del, NC_000010.10:g.104212132_104212140del, NC_000010.10:g.104212133_104212140del, NC_000010.10:g.104212135_104212140del, NC_000010.10:g.104212137_104212140del, NC_000010.10:g.104212138_104212140del, NC_000010.10:g.104212139_104212140del, NC_000010.10:g.104212140del, NC_000010.10:g.104212140dup, NC_000010.10:g.104212139_104212140dup, NC_000010.10:g.104212138_104212140dup, NC_000010.10:g.104212137_104212140dup, NC_000010.10:g.104212136_104212140dup, NC_000010.10:g.104212135_104212140dup

Select item 14910550725.

rs1491055072 has merged into rs10706803 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 10:102452372 (GRCh38)
10:104212129 (GRCh37)
Canonical SPDI:: NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:102452363:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTT=0./0 (ALFA)
-=0.35/14 (GENOME_DK)
HGVS:: NC_000010.11:g.102452372_102452383del, NC_000010.11:g.102452373_102452383del, NC_000010.11:g.102452374_102452383del, NC_000010.11:g.102452375_102452383del, NC_000010.11:g.102452376_102452383del, NC_000010.11:g.102452378_102452383del, NC_000010.11:g.102452380_102452383del, NC_000010.11:g.102452381_102452383del, NC_000010.11:g.102452382_102452383del, NC_000010.11:g.102452383del, NC_000010.11:g.102452383dup, NC_000010.11:g.102452382_102452383dup, NC_000010.11:g.102452381_102452383dup, NC_000010.11:g.102452380_102452383dup, NC_000010.11:g.102452379_102452383dup, NC_000010.11:g.102452378_102452383dup, NC_000010.10:g.104212129_104212140del, NC_000010.10:g.104212130_104212140del, NC_000010.10:g.104212131_104212140del, NC_000010.10:g.104212132_104212140del, NC_000010.10:g.104212133_104212140del, NC_000010.10:g.104212135_104212140del, NC_000010.10:g.104212137_104212140del, NC_000010.10:g.104212138_104212140del, NC_000010.10:g.104212139_104212140del, NC_000010.10:g.104212140del, NC_000010.10:g.104212140dup, NC_000010.10:g.104212139_104212140dup, NC_000010.10:g.104212138_104212140dup, NC_000010.10:g.104212137_104212140dup, NC_000010.10:g.104212136_104212140dup, NC_000010.10:g.104212135_104212140dup

Select item 14908750396.

rs1490875039 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:102449495 (GRCh38)
10:104209252 (GRCh37)
Canonical SPDI:: NC_000010.11:102449494:G:A
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.102449495G>A, NC_000010.10:g.104209252G>A

Select item 14900570357.

rs1490057035 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 10:102449813 (GRCh38)
10:104209570 (GRCh37)
Canonical SPDI:: NC_000010.11:102449812:CT:
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000010.11:g.102449813_102449814del, NC_000010.10:g.104209570_104209571del

Select item 14900323448.

rs1490032344 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 10:102451185 (GRCh38)
10:104210943 (GRCh37)
Canonical SPDI:: NC_000010.11:102451185:TT:TTT
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000010.11:g.102451187dup, NC_000010.10:g.104210944dup

Select item 14895821879.

rs1489582187 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 10:102450086 (GRCh38)
10:104209843 (GRCh37)
Canonical SPDI:: NC_000010.11:102450085:A:C
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.102450086A>C, NC_000010.10:g.104209843A>C, NM_024886.2:c.*371T>G, NM_024886.1:c.*371T>G, NM_001363580.1:c.*366T>G

Select item 148821580910.

rs1488215809 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:102452494 (GRCh38)
10:104212251 (GRCh37)
Canonical SPDI:: NC_000010.11:102452493:T:C
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.102452494T>C, NC_000010.10:g.104212251T>C

Select item 148709139911.

rs1487091399 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:102450400 (GRCh38)
10:104210157 (GRCh37)
Canonical SPDI:: NC_000010.11:102450399:G:A
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.102450400G>A, NC_000010.10:g.104210157G>A, NM_024886.2:c.*57C>T, NM_024886.1:c.*57C>T, NM_001363580.1:c.*52C>T

Select item 148616536512.

rs1486165365 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 10:102452388 (GRCh38)
10:104212145 (GRCh37)
Canonical SPDI:: NC_000010.11:102452387:C:A,NC_000010.11:102452387:C:T
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
A=0.00167/47 (TOMMO)
HGVS:: NC_000010.11:g.102452388C>A, NC_000010.11:g.102452388C>T, NC_000010.10:g.104212145C>A, NC_000010.10:g.104212145C>T

Select item 148613711013.

rs1486137110 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:102452036 (GRCh38)
10:104211793 (GRCh37)
Canonical SPDI:: NC_000010.11:102452035:C:G
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/1 (GnomAD)
HGVS:: NC_000010.11:g.102452036C>G, NC_000010.10:g.104211793C>G

Select item 148599729114.

rs1485997291 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:102450193 (GRCh38)
10:104209950 (GRCh37)
Canonical SPDI:: NC_000010.11:102450192:G:A
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000035/1 (TOMMO)
A=0.00005/7 (GnomAD)
HGVS:: NC_000010.11:g.102450193G>A, NC_000010.10:g.104209950G>A, NM_024886.2:c.*264C>T, NR_038937.1:n.213G>A, NM_024886.1:c.*264C>T, NM_001363580.1:c.*259C>T, NR_038938.1:n.213G>A

Select item 148549397015.

rs1485493970 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 10:102450008 (GRCh38)
10:104209765 (GRCh37)
Canonical SPDI:: NC_000010.11:102450007:GG:G
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.102450009del, NC_000010.10:g.104209766del, NM_024886.2:c.*449del, NR_038937.1:n.193del, NM_024886.1:c.*449del, NM_001363580.1:c.*444del, NR_038938.1:n.193del

Select item 148456021516.

rs1484560215 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:102453172 (GRCh38)
10:104212929 (GRCh37)
Canonical SPDI:: NC_000010.11:102453171:C:A
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0.00008/1 (ALFA)
HGVS:: NC_000010.11:g.102453172C>A, NC_000010.10:g.104212929C>A

Select item 148421190017.

rs1484211900 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:102453294 (GRCh38)
10:104213051 (GRCh37)
Canonical SPDI:: NC_000010.11:102453293:C:T
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.102453294C>T, NC_000010.10:g.104213051C>T

Select item 148385980318.

rs1483859803 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:102450896 (GRCh38)
10:104210653 (GRCh37)
Canonical SPDI:: NC_000010.11:102450895:C:G
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: coding_sequence_variant,intron_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000010.11:g.102450896C>G, NC_000010.10:g.104210653C>G, NM_024886.2:c.335G>C, NM_024886.1:c.335G>C, NM_001363580.1:c.198G>C

Select item 148354999019.

rs1483549990 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:102452529 (GRCh38)
10:104212286 (GRCh37)
Canonical SPDI:: NC_000010.11:102452528:C:A
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0.0002/1 (ALFA)
HGVS:: NC_000010.11:g.102452529C>A, NC_000010.10:g.104212286C>A

Select item 148354280420.

rs1483542804 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 10:102450646 (GRCh38)
10:104210403 (GRCh37)
Canonical SPDI:: NC_000010.11:102450645:C:A,NC_000010.11:102450645:C:T
Gene:: C10orf95 (Varview), C10orf95-AS1 (Varview)
Functional Consequence:: coding_sequence_variant,intron_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000010.11:g.102450646C>A, NC_000010.11:g.102450646C>T, NC_000010.10:g.104210403C>A, NC_000010.10:g.104210403C>T, NM_024886.2:c.585G>T, NM_024886.2:c.585G>A, NM_024886.1:c.585G>T, NM_024886.1:c.585G>A, NM_001363580.1:c.448G>T, NM_001363580.1:c.448G>A, NP_001350509.1:p.Gly150Cys, NP_001350509.1:p.Gly150Ser

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