SNP Links for Gene (Select 81469) - SNP

Links from Gene

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Select item 14893956031.

rs1489395603 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 1:247603845 (GRCh38)
1:247767148 (GRCh37)
Canonical SPDI:: NC_000001.11:247603845:A:AA
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.247603846dup, NC_000001.10:g.247767148dup

Select item 14887206062.

rs1488720606 [Homo sapiens]

Variant type:: INS
Alleles:: ->GCCGTATCATTA [Show Flanks]
Chromosome:: 1:247606095 (GRCh38)
1:247769398 (GRCh37)
Canonical SPDI:: NC_000001.11:247606095::GCCGTATCATTA
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: intron_variant,inframe_insertion,coding_sequence_variant
HGVS:: NC_000001.11:g.247606095_247606096insGCCGTATCATTA, NC_000001.10:g.247769397_247769398insGCCGTATCATTA, NM_001001914.1:c.510_511insGCCGTATCATTA, NP_001001914.1:p.Asn171_His172insAlaValSerLeu

Select item 14869819923.

rs1486981992 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:247606941 (GRCh38)
1:247770243 (GRCh37)
Canonical SPDI:: NC_000001.11:247606940:G:A
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.247606941G>A, NC_000001.10:g.247770243G>A

Select item 14837506984.

rs1483750698 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:247604344 (GRCh38)
1:247767646 (GRCh37)
Canonical SPDI:: NC_000001.11:247604343:A:C
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.247604344A>C, NC_000001.10:g.247767646A>C

Select item 14831550185.

rs1483155018 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:247604972 (GRCh38)
1:247768274 (GRCh37)
Canonical SPDI:: NC_000001.11:247604971:T:C
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000026/7 (TOPMED)
C=0.000036/5 (GnomAD)
HGVS:: NC_000001.11:g.247604972T>C, NC_000001.10:g.247768274T>C

Select item 14824944746.

rs1482494474 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:247603979 (GRCh38)
1:247767281 (GRCh37)
Canonical SPDI:: NC_000001.11:247603978:G:A
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000001.11:g.247603979G>A, NC_000001.10:g.247767281G>A

Select item 14811236927.

rs1481123692 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:247606018 (GRCh38)
1:247769320 (GRCh37)
Canonical SPDI:: NC_000001.11:247606017:G:A
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: intron_variant,coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.247606018G>A, NC_000001.10:g.247769320G>A, NM_001001914.1:c.433G>A, NP_001001914.1:p.Ala145Thr

Select item 14807064768.

rs1480706476 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:247605765 (GRCh38)
1:247769067 (GRCh37)
Canonical SPDI:: NC_000001.11:247605764:C:A
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: stop_gained,intron_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.247605765C>A, NC_000001.10:g.247769067C>A, NM_001001914.1:c.180C>A, NP_001001914.1:p.Tyr60Ter

Select item 14803621459.

rs1480362145 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:247604501 (GRCh38)
1:247767803 (GRCh37)
Canonical SPDI:: NC_000001.11:247604500:C:A
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.247604501C>A, NC_000001.10:g.247767803C>A

Select item 147780167510.

rs1477801675 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:247606686 (GRCh38)
1:247769988 (GRCh37)
Canonical SPDI:: NC_000001.11:247606685:T:C
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.247606686T>C, NC_000001.10:g.247769988T>C

Select item 147777291111.

rs1477772911 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 1:247604423 (GRCh38)
1:247767725 (GRCh37)
Canonical SPDI:: NC_000001.11:247604422:T:A,NC_000001.11:247604422:T:G
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.247604423T>A, NC_000001.11:g.247604423T>G, NC_000001.10:g.247767725T>A, NC_000001.10:g.247767725T>G

Select item 147658082212.

rs1476580822 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:247605424 (GRCh38)
1:247768726 (GRCh37)
Canonical SPDI:: NC_000001.11:247605423:G:A
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.247605424G>A, NC_000001.10:g.247768726G>A

Select item 147630132413.

rs1476301324 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGTACATTGCTGTC>- [Show Flanks]
Chromosome:: 1:247605950 (GRCh38)
1:247769252 (GRCh37)
Canonical SPDI:: NC_000001.11:247605947:TCGGTACATTGCTGTC:TC
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: intron_variant,coding_sequence_variant,frameshift_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TC=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.247605950_247605963del, NC_000001.10:g.247769252_247769265del, NM_001001914.1:c.365_378del, NP_001001914.1:p.Arg122fs

Select item 147613792614.

rs1476137926 [Homo sapiens]

Variant type:: DELINS
Alleles:: TAATT>- [Show Flanks]
Chromosome:: 1:247605528 (GRCh38)
1:247768830 (GRCh37)
Canonical SPDI:: NC_000001.11:247605523:AATTTAATT:AATT
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AATT=0.0002/1 (ALFA)
-=0.0002/1 (Estonian)
HGVS:: NC_000001.11:g.247605528_247605532del, NC_000001.10:g.247768830_247768834del

Select item 147509373915.

rs1475093739 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:247606104 (GRCh38)
1:247769406 (GRCh37)
Canonical SPDI:: NC_000001.11:247606103:G:C
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.247606104G>C, NC_000001.10:g.247769406G>C, NM_001001914.1:c.519G>C, NP_001001914.1:p.Arg173Ser

Select item 147186465216.

rs1471864652 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:247603619 (GRCh38)
1:247766921 (GRCh37)
Canonical SPDI:: NC_000001.11:247603618:A:G
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.247603619A>G, NC_000001.10:g.247766921A>G

Select item 147034562817.

rs1470345628 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:247606658 (GRCh38)
1:247769960 (GRCh37)
Canonical SPDI:: NC_000001.11:247606657:T:G
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.247606658T>G, NC_000001.10:g.247769960T>G

Select item 146875408918.

rs1468754089 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:247605702 (GRCh38)
1:247769004 (GRCh37)
Canonical SPDI:: NC_000001.11:247605701:T:G
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.247605702T>G, NC_000001.10:g.247769004T>G, NM_001001914.1:c.117T>G

Select item 146744597219.

rs1467445972 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:247604033 (GRCh38)
1:247767335 (GRCh37)
Canonical SPDI:: NC_000001.11:247604032:G:A
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.247604033G>A, NC_000001.10:g.247767335G>A

Select item 146675643020.

rs1466756430 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:247604492 (GRCh38)
1:247767794 (GRCh37)
Canonical SPDI:: NC_000001.11:247604491:C:T
Gene:: OR2G3 (Varview), LOC102724446 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000035/1 (TOMMO)
HGVS:: NC_000001.11:g.247604492C>T, NC_000001.10:g.247767794C>T

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