SNP Links for Gene (Select 84066) - SNP

Links from Gene

Items: 1 to 20 of 2981

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Select item 14902380961.

rs1490238096 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:178515234 (GRCh38)
1:178484369 (GRCh37)
Canonical SPDI:: NC_000001.11:178515233:A:T
Gene:: TEX35 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.178515234A>T, NC_000001.10:g.178484369A>T

Select item 14900037332.

rs1490003733 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 1:178523564 (GRCh38)
1:178492699 (GRCh37)
Canonical SPDI:: NC_000001.11:178523563:G:A,NC_000001.11:178523563:G:T
Gene:: TEX35 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.178523564G>A, NC_000001.11:g.178523564G>T, NC_000001.10:g.178492699G>A, NC_000001.10:g.178492699G>T

Select item 14897195673.

rs1489719567 [Homo sapiens]

Variant type:: DELINS
Alleles:: TCAT>- [Show Flanks]
Chromosome:: 1:178523190 (GRCh38)
1:178492325 (GRCh37)
Canonical SPDI:: NC_000001.11:178523185:TCATTCAT:TCAT
Gene:: TEX35 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TCATTCAT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.178523186TCAT[1], NC_000001.10:g.178492321TCAT[1]

Select item 14897076614.

rs1489707661 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:178514650 (GRCh38)
1:178483785 (GRCh37)
Canonical SPDI:: NC_000001.11:178514649:A:G
Gene:: TEX35 (Varview), LOC101928866 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.178514650A>G, NC_000001.10:g.178483785A>G

Select item 14891720875.

rs1489172087 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:178513276 (GRCh38)
1:178482411 (GRCh37)
Canonical SPDI:: NC_000001.11:178513275:C:A,NC_000001.11:178513275:C:T
Gene:: TEX35 (Varview), LOC101928866 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.178513276C>A, NC_000001.11:g.178513276C>T, NC_000001.10:g.178482411C>A, NC_000001.10:g.178482411C>T

Select item 14891278506.

rs1489127850 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:178521571 (GRCh38)
1:178490706 (GRCh37)
Canonical SPDI:: NC_000001.11:178521570:C:T
Gene:: TEX35 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000013/2 (GnomAD_exomes)
HGVS:: NC_000001.11:g.178521571C>T, NC_000001.10:g.178490706C>T

Select item 14888556577.

rs1488855657 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:178516533 (GRCh38)
1:178485668 (GRCh37)
Canonical SPDI:: NC_000001.11:178516532:C:T
Gene:: TEX35 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.178516533C>T, NC_000001.10:g.178485668C>T

Select item 14887870218.

rs1488787021 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:178512240 (GRCh38)
1:178481375 (GRCh37)
Canonical SPDI:: NC_000001.11:178512239:T:C
Gene:: TEX35 (Varview), LOC101928866 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000036/5 (GnomAD)
HGVS:: NC_000001.11:g.178512240T>C, NC_000001.10:g.178481375T>C, XR_922305.3:n.452A>G, XR_922305.2:n.430A>G, XR_922305.1:n.430A>G, XR_922303.3:n.452A>G, XR_922303.2:n.451A>G, XR_922303.1:n.430A>G, XR_001738305.2:n.452A>G, XR_001738305.1:n.430A>G, XR_001738307.2:n.452A>G, XR_001738307.1:n.430A>G, XR_001738306.2:n.452A>G, XR_001738306.1:n.430A>G

Select item 14884805549.

rs1488480554 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:178514092 (GRCh38)
1:178483227 (GRCh37)
Canonical SPDI:: NC_000001.11:178514091:T:G
Gene:: TEX35 (Varview), LOC101928866 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.178514092T>G, NC_000001.10:g.178483227T>G

Select item 148747866110.

rs1487478661 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:178512771 (GRCh38)
1:178481906 (GRCh37)
Canonical SPDI:: NC_000001.11:178512770:A:C
Gene:: TEX35 (Varview), LOC101928866 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.178512771A>C, NC_000001.10:g.178481906A>C, XR_922305.3:n.280T>G, XR_922305.2:n.258T>G, XR_922305.1:n.258T>G, XR_922303.3:n.280T>G, XR_922303.2:n.279T>G, XR_922303.1:n.258T>G, XR_001738305.2:n.280T>G, XR_001738305.1:n.258T>G, XR_001738307.2:n.280T>G, XR_001738307.1:n.258T>G, XR_001738306.2:n.280T>G, XR_001738306.1:n.258T>G

Select item 148664697611.

rs1486646976 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:178523721 (GRCh38)
1:178492856 (GRCh37)
Canonical SPDI:: NC_000001.11:178523720:A:T
Gene:: TEX35 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.178523721A>T, NC_000001.10:g.178492856A>T

Select item 148592111212.

rs1485921112 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:178519065 (GRCh38)
1:178488200 (GRCh37)
Canonical SPDI:: NC_000001.11:178519064:G:A
Gene:: TEX35 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.178519065G>A, NC_000001.10:g.178488200G>A

Select item 148581903413.

rs1485819034 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTG>- [Show Flanks]
Chromosome:: 1:178517986 (GRCh38)
1:178487121 (GRCh37)
Canonical SPDI:: NC_000001.11:178517983:TGTTTG:TG
Gene:: TEX35 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TG=0.000071/1 (ALFA)
-=0./0 (GnomAD)
-=0.000008/2 (TOPMED)
-=0.000156/1 (1000Genomes)
HGVS:: NC_000001.11:g.178517986_178517989del, NC_000001.10:g.178487121_178487124del

Select item 148579551914.

rs1485795519 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:178521476 (GRCh38)
1:178490611 (GRCh37)
Canonical SPDI:: NC_000001.11:178521475:C:T
Gene:: TEX35 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.178521476C>T, NC_000001.10:g.178490611C>T

Select item 148557019915.

rs1485570199 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 1:178512845 (GRCh38)
1:178481980 (GRCh37)
Canonical SPDI:: NC_000001.11:178512844:T:A,NC_000001.11:178512844:T:C
Gene:: TEX35 (Varview), LOC101928866 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000038/10 (TOPMED)
A=0.000546/1 (Korea1K)
HGVS:: NC_000001.11:g.178512845T>A, NC_000001.11:g.178512845T>C, NC_000001.10:g.178481980T>A, NC_000001.10:g.178481980T>C, XR_922305.3:n.206A>T, XR_922305.3:n.206A>G, XR_922305.2:n.184A>T, XR_922305.2:n.184A>G, XR_922305.1:n.184A>T, XR_922305.1:n.184A>G, XR_922303.3:n.206A>T, XR_922303.3:n.206A>G, XR_922303.2:n.205A>T, XR_922303.2:n.205A>G, XR_922303.1:n.184A>T, XR_922303.1:n.184A>G, XR_001738305.2:n.206A>T, XR_001738305.2:n.206A>G, XR_001738305.1:n.184A>T, XR_001738305.1:n.184A>G, XR_001738307.2:n.206A>T, XR_001738307.2:n.206A>G, XR_001738307.1:n.184A>T, XR_001738307.1:n.184A>G, XR_001738306.2:n.206A>T, XR_001738306.2:n.206A>G, XR_001738306.1:n.184A>T, XR_001738306.1:n.184A>G

Select item 148554433116.

rs1485544331 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:178511724 (GRCh38)
1:178480859 (GRCh37)
Canonical SPDI:: NC_000001.11:178511723:C:G,NC_000001.11:178511723:C:T
Gene:: TEX35 (Varview), LOC101928866 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.178511724C>G, NC_000001.11:g.178511724C>T, NC_000001.10:g.178480859C>G, NC_000001.10:g.178480859C>T, XR_922303.3:n.968G>C, XR_922303.3:n.968G>A

Select item 148533559717.

rs1485335597 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:178521168 (GRCh38)
1:178490303 (GRCh37)
Canonical SPDI:: NC_000001.11:178521167:C:T
Gene:: TEX35 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.178521168C>T, NC_000001.10:g.178490303C>T

Select item 148526367618.

rs1485263676 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:178520214 (GRCh38)
1:178489349 (GRCh37)
Canonical SPDI:: NC_000001.11:178520213:A:G
Gene:: TEX35 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.178520214A>G, NC_000001.10:g.178489349A>G

Select item 148501218319.

rs1485012183 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:178516056 (GRCh38)
1:178485191 (GRCh37)
Canonical SPDI:: NC_000001.11:178516055:T:C
Gene:: TEX35 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000094/1 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.178516056T>C, NC_000001.10:g.178485191T>C

Select item 148459038220.

rs1484590382 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:178512480 (GRCh38)
1:178481615 (GRCh37)
Canonical SPDI:: NC_000001.11:178512479:G:C
Gene:: TEX35 (Varview), LOC101928866 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.178512480G>C, NC_000001.10:g.178481615G>C

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