SNP Links for Gene (Select 84793) - SNP

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Select item 14914541291.

rs1491454129 [Homo sapiens]

Variant type:: DEL
Alleles:: TC>- [Show Flanks]
Chromosome:: 1:47435549 (GRCh38)
1:47901221 (GRCh37)
Canonical SPDI:: NC_000001.11:47435548:TC:
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0.00008/1 (ALFA)
HGVS:: NC_000001.11:g.47435549_47435550del, NC_000001.10:g.47901221_47901222del

Select item 14912463852.

rs1491246385 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 1:47435549 (GRCh38)
1:47901222 (GRCh37)
Canonical SPDI:: NC_000001.11:47435549:CAAAAAAAAAAAAAA:CAAAAAAAAAAAAAACAAAAAAAAAAAAAA
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: CAAAAAAAAAAAAAA=0.001/2 (GnomAD)
HGVS:: NC_000001.11:g.47435550_47435564dup, NC_000001.10:g.47901222_47901236dup

Select item 14903216743.

rs1490321674 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 1:47435130 (GRCh38)
1:47900802 (GRCh37)
Canonical SPDI:: NC_000001.11:47435129:TT:T
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.47435131del, NC_000001.10:g.47900803del

Select item 14898311494.

rs1489831149 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:47435974 (GRCh38)
1:47901646 (GRCh37)
Canonical SPDI:: NC_000001.11:47435973:T:C
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.47435974T>C, NC_000001.10:g.47901646T>C

Select item 14891765505.

rs1489176550 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 1:47431743 (GRCh38)
1:47897415 (GRCh37)
Canonical SPDI:: NC_000001.11:47431742:A:C,NC_000001.11:47431742:A:G
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000001.11:g.47431743A>C, NC_000001.11:g.47431743A>G, NC_000001.10:g.47897415A>C, NC_000001.10:g.47897415A>G

Select item 14881459636.

rs1488145963 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:47436067 (GRCh38)
1:47901739 (GRCh37)
Canonical SPDI:: NC_000001.11:47436066:C:A
Gene:: FOXD2 (Varview), FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.47436067C>A, NC_000001.10:g.47901739C>A, NM_004474.3:c.-2069C>A

Select item 14879456657.

rs1487945665 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:47436454 (GRCh38)
1:47902126 (GRCh37)
Canonical SPDI:: NC_000001.11:47436453:G:A
Gene:: FOXD2 (Varview), FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.47436454G>A, NC_000001.10:g.47902126G>A, NM_004474.3:c.-1682G>A

Select item 14875826778.

rs1487582677 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:47432853 (GRCh38)
1:47898525 (GRCh37)
Canonical SPDI:: NC_000001.11:47432852:G:C
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.47432853G>C, NC_000001.10:g.47898525G>C, NR_026878.1:n.1789C>G, NM_032707.1:c.*181C>G

Select item 14873128729.

rs1487312872 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:47433285 (GRCh38)
1:47898957 (GRCh37)
Canonical SPDI:: NC_000001.11:47433284:G:A
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.47433285G>A, NC_000001.10:g.47898957G>A, NR_026878.1:n.1357C>T, NM_032707.1:c.-114C>T

Select item 148724180510.

rs1487241805 has merged into rs1315392138 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG [Show Flanks]
Chromosome:: 1:47432166 (GRCh38)
1:47897838 (GRCh37)
Canonical SPDI:: NC_000001.11:47432165:GGGGGG:GGGGG,NC_000001.11:47432165:GGGGGG:GGGGGGG
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGG=0.00006/1 (ALFA)
-=0.00022/1 (Estonian)
HGVS:: NC_000001.11:g.47432171del, NC_000001.11:g.47432171dup, NC_000001.10:g.47897843del, NC_000001.10:g.47897843dup, NR_026878.1:n.2476del, NR_026878.1:n.2476dup, NM_032707.1:c.*868del, NM_032707.1:c.*868dup

Select item 148723629011.

rs1487236290 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:47434075 (GRCh38)
1:47899747 (GRCh37)
Canonical SPDI:: NC_000001.11:47434074:G:T
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.47434075G>T, NC_000001.10:g.47899747G>T, NR_026878.1:n.567C>A, NM_032707.1:c.-904C>A

Select item 148679346112.

rs1486793461 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:47434309 (GRCh38)
1:47899981 (GRCh37)
Canonical SPDI:: NC_000001.11:47434308:A:T
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.47434309A>T, NC_000001.10:g.47899981A>T, NR_026878.1:n.333T>A, NM_032707.1:c.-1138T>A

Select item 148640677813.

rs1486406778 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:47434936 (GRCh38)
1:47900608 (GRCh37)
Canonical SPDI:: NC_000001.11:47434935:T:C
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.47434936T>C, NC_000001.10:g.47900608T>C

Select item 148632737014.

rs1486327370 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:47434011 (GRCh38)
1:47899683 (GRCh37)
Canonical SPDI:: NC_000001.11:47434010:C:T
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.47434011C>T, NC_000001.10:g.47899683C>T, NR_026878.1:n.631G>A, NM_032707.1:c.-840G>A

Select item 148554692615.

rs1485546926 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:47434425 (GRCh38)
1:47900097 (GRCh37)
Canonical SPDI:: NC_000001.11:47434424:G:C
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000083/22 (TOPMED)
C=0.00015/21 (GnomAD)
HGVS:: NC_000001.11:g.47434425G>C, NC_000001.10:g.47900097G>C, NR_026878.1:n.217C>G, NM_032707.1:c.-1254C>G

Select item 148476339816.

rs1484763398 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:47434504 (GRCh38)
1:47900176 (GRCh37)
Canonical SPDI:: NC_000001.11:47434503:C:G,NC_000001.11:47434503:C:T
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.47434504C>G, NC_000001.11:g.47434504C>T, NC_000001.10:g.47900176C>G, NC_000001.10:g.47900176C>T, NR_026878.1:n.138G>C, NR_026878.1:n.138G>A, NM_032707.1:c.-1333G>C, NM_032707.1:c.-1333G>A

Select item 148470182817.

rs1484701828 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:47433518 (GRCh38)
1:47899190 (GRCh37)
Canonical SPDI:: NC_000001.11:47433517:A:G
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.47433518A>G, NC_000001.10:g.47899190A>G, NR_026878.1:n.1124T>C, NM_032707.1:c.-347T>C

Select item 148443262518.

rs1484432625 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:47431838 (GRCh38)
1:47897510 (GRCh37)
Canonical SPDI:: NC_000001.11:47431837:A:T
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.47431838A>T, NC_000001.10:g.47897510A>T

Select item 148411429519.

rs1484114295 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:47433628 (GRCh38)
1:47899300 (GRCh37)
Canonical SPDI:: NC_000001.11:47433627:C:T
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000034/9 (TOPMED)
HGVS:: NC_000001.11:g.47433628C>T, NC_000001.10:g.47899300C>T, NR_026878.1:n.1014G>A, NM_032707.1:c.-457G>A

Select item 148306455720.

rs1483064557 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:47433025 (GRCh38)
1:47898697 (GRCh37)
Canonical SPDI:: NC_000001.11:47433024:C:T
Gene:: FOXD2-AS1 (Varview), LINC01389 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.47433025C>T, NC_000001.10:g.47898697C>T, NR_026878.1:n.1617G>A, NM_032707.1:c.*9G>A

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