SNP Links for Gene (Select 84891) - SNP

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Select item 14915524181.

rs1491552418 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 16:3098090 (GRCh38)
16:3148091 (GRCh37)
Canonical SPDI:: NC_000016.10:3098088:AGA:A
Gene:: ZSCAN10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.00008/1 (ALFA)
HGVS:: NC_000016.10:g.3098090_3098091del, NC_000016.9:g.3148091_3148092del

Select item 14912844662.

rs1491284466 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 16:3098042 (GRCh38)
16:3148043 (GRCh37)
Canonical SPDI:: NC_000016.10:3098041:CA:
Gene:: ZSCAN10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.0013/5 (TWINSUK)
-=0.0029/11 (ALSPAC)
HGVS:: NC_000016.10:g.3098042_3098043del, NC_000016.9:g.3148043_3148044del

Select item 14912357143.

rs1491235714 has merged into rs34194103 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAA>-,A,AA,AAA,AAAAA,AAAAAA [Show Flanks]
Chromosome:: 16:3097107 (GRCh38)
16:3147108 (GRCh37)
Canonical SPDI:: NC_000016.10:3097096:AAAAAAAAAAAAAA:AAAAAAAAAA,NC_000016.10:3097096:AAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000016.10:3097096:AAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000016.10:3097096:AAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000016.10:3097096:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000016.10:3097096:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA
Gene:: ZSCAN10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAA=0./0 (ALFA)
-=0.36027/214 (NorthernSweden)
A=0.41818/2678 (1000Genomes)
A=0.46454/7782 (TOMMO)
-=0.46926/1740 (TWINSUK)
-=0.48573/1872 (ALSPAC)
A=0.5/20 (GENOME_DK)
HGVS:: NC_000016.10:g.3097107_3097110del, NC_000016.10:g.3097108_3097110del, NC_000016.10:g.3097109_3097110del, NC_000016.10:g.3097110del, NC_000016.10:g.3097110dup, NC_000016.10:g.3097109_3097110dup, NC_000016.9:g.3147108_3147111del, NC_000016.9:g.3147109_3147111del, NC_000016.9:g.3147110_3147111del, NC_000016.9:g.3147111del, NC_000016.9:g.3147111dup, NC_000016.9:g.3147110_3147111dup

Select item 14912249884.

rs1491224988 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 16:3098089 (GRCh38)
16:3148091 (GRCh37)
Canonical SPDI:: NC_000016.10:3098089:G:GG
Gene:: ZSCAN10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.3098090dup, NC_000016.9:g.3148091dup

Select item 14910727245.

rs1491072724 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 16:3098063 (GRCh38)
16:3148064 (GRCh37)
Canonical SPDI:: NC_000016.10:3098061:AGA:A
Gene:: ZSCAN10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000016.10:g.3098063_3098064del, NC_000016.9:g.3148064_3148065del

Select item 14908980566.

rs1490898056 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:3097806 (GRCh38)
16:3147807 (GRCh37)
Canonical SPDI:: NC_000016.10:3097805:C:T
Gene:: ZSCAN10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.3097806C>T, NC_000016.9:g.3147807C>T

Select item 14907709487.

rs1490770948 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 16:3092766 (GRCh38)
16:3142767 (GRCh37)
Canonical SPDI:: NC_000016.10:3092765:G:A,NC_000016.10:3092765:G:T
Gene:: ZSCAN10 (Varview)
Functional Consequence:: coding_sequence_variant,intron_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.3092766G>A, NC_000016.10:g.3092766G>T, NC_000016.9:g.3142767G>A, NC_000016.9:g.3142767G>T, NM_032805.3:c.172C>T, NM_032805.3:c.172C>A, NM_032805.2:c.172C>T, NM_032805.2:c.172C>A, NM_032805.1:c.7C>T, NM_032805.1:c.7C>A, NM_001282416.2:c.29C>T, NM_001282416.2:c.29C>A, NM_001282416.1:c.29C>T, NM_001282416.1:c.29C>A, NM_001365272.1:c.29C>T, NM_001365272.1:c.29C>A, NP_116194.2:p.Pro58Ser, NP_116194.2:p.Pro58Thr, NP_001269345.1:p.Ala10Val, NP_001269345.1:p.Ala10Asp, NP_001352201.1:p.Ala10Val, NP_001352201.1:p.Ala10Asp

Select item 14898318278.

rs1489831827 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TT [Show Flanks]
Chromosome:: 16:3098835 (GRCh38)
16:3148837 (GRCh37)
Canonical SPDI:: NC_000016.10:3098835:TTT:TTTTT
Gene:: ZSCAN10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTT=0./0 (ALFA)
TT=0.000029/4 (GnomAD)
TT=0.000053/14 (TOPMED)
HGVS:: NC_000016.10:g.3098837_3098838dup, NC_000016.9:g.3148838_3148839dup

Select item 14897941369.

rs1489794136 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:3097745 (GRCh38)
16:3147746 (GRCh37)
Canonical SPDI:: NC_000016.10:3097744:A:G
Gene:: ZSCAN10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.3097745A>G, NC_000016.9:g.3147746A>G

Select item 148976806810.

rs1489768068 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 16:3095869 (GRCh38)
16:3145871 (GRCh37)
Canonical SPDI:: NC_000016.10:3095869::G
Gene:: ZSCAN10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000022/3 (GnomAD)
HGVS:: NC_000016.10:g.3095869_3095870insG, NC_000016.9:g.3145870_3145871insG

Select item 148964637711.

rs1489646377 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 16:3092760 (GRCh38)
16:3142761 (GRCh37)
Canonical SPDI:: NC_000016.10:3092759:C:A,NC_000016.10:3092759:C:T
Gene:: ZSCAN10 (Varview)
Functional Consequence:: coding_sequence_variant,intron_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000016.10:g.3092760C>A, NC_000016.10:g.3092760C>T, NC_000016.9:g.3142761C>A, NC_000016.9:g.3142761C>T, NM_032805.3:c.178G>T, NM_032805.3:c.178G>A, NM_032805.2:c.178G>T, NM_032805.2:c.178G>A, NM_032805.1:c.13G>T, NM_032805.1:c.13G>A, NM_001282416.2:c.35G>T, NM_001282416.2:c.35G>A, NM_001282416.1:c.35G>T, NM_001282416.1:c.35G>A, NM_001365272.1:c.35G>T, NM_001365272.1:c.35G>A, NP_116194.2:p.Ala60Ser, NP_116194.2:p.Ala60Thr, NP_001269345.1:p.Gly12Val, NP_001269345.1:p.Gly12Asp, NP_001352201.1:p.Gly12Val, NP_001352201.1:p.Gly12Asp

Select item 148960469112.

rs1489604691 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:3096444 (GRCh38)
16:3146445 (GRCh37)
Canonical SPDI:: NC_000016.10:3096443:C:T
Gene:: ZSCAN10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.3096444C>T, NC_000016.9:g.3146445C>T

Select item 148950977613.

rs1489509776 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:3092400 (GRCh38)
16:3142401 (GRCh37)
Canonical SPDI:: NC_000016.10:3092399:G:A
Gene:: ZSCAN10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.3092400G>A, NC_000016.9:g.3142401G>A

Select item 148912279914.

rs1489122799 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:3099085 (GRCh38)
16:3149086 (GRCh37)
Canonical SPDI:: NC_000016.10:3099084:C:T
Gene:: ZSCAN10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.3099085C>T, NC_000016.9:g.3149086C>T

Select item 148883861915.

rs1488838619 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 16:3091607 (GRCh38)
16:3141608 (GRCh37)
Canonical SPDI:: NC_000016.10:3091606:G:A,NC_000016.10:3091606:G:C
Gene:: ZSCAN10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
C=0.000004/1 (GnomAD_exomes)
A=0.000023/6 (TOPMED)
HGVS:: NC_000016.10:g.3091607G>A, NC_000016.10:g.3091607G>C, NC_000016.9:g.3141608G>A, NC_000016.9:g.3141608G>C

Select item 148879686416.

rs1488796864 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:3090276 (GRCh38)
16:3140277 (GRCh37)
Canonical SPDI:: NC_000016.10:3090275:G:A
Gene:: ZSCAN10 (Varview)
Functional Consequence:: coding_sequence_variant,5_prime_UTR_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000094/1 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000023/6 (TOPMED)
HGVS:: NC_000016.10:g.3090276G>A, NC_000016.9:g.3140277G>A, NM_032805.3:c.1158C>T, NM_032805.2:c.1158C>T, NM_032805.1:c.993C>T, NM_001282416.2:c.747C>T, NM_001282416.1:c.747C>T, NM_001282415.2:c.-25C>T, NM_001282415.1:c.-25C>T, NM_001365272.1:c.612C>T, NM_001365273.1:c.-25C>T

Select item 148865611917.

rs1488656119 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:3098284 (GRCh38)
16:3148285 (GRCh37)
Canonical SPDI:: NC_000016.10:3098283:C:T
Gene:: ZSCAN10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000016.10:g.3098284C>T, NC_000016.9:g.3148285C>T

Select item 148830817118.

rs1488308171 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 16:3093539 (GRCh38)
16:3143540 (GRCh37)
Canonical SPDI:: NC_000016.10:3093538:C:A,NC_000016.10:3093538:C:T
Gene:: ZSCAN10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.3093539C>A, NC_000016.10:g.3093539C>T, NC_000016.9:g.3143540C>A, NC_000016.9:g.3143540C>T

Select item 148818444619.

rs1488184446 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:3092563 (GRCh38)
16:3142564 (GRCh37)
Canonical SPDI:: NC_000016.10:3092562:C:T
Gene:: ZSCAN10 (Varview)
Functional Consequence:: coding_sequence_variant,intron_variant,missense_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.3092563C>T, NC_000016.9:g.3142564C>T, NM_032805.3:c.375G>A, NM_032805.2:c.375G>A, NM_032805.1:c.210G>A, NM_001282416.2:c.232G>A, NM_001282416.1:c.232G>A, NP_001269345.1:p.Ala78Thr

Select item 148813926120.

rs1488139261 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 16:3098731 (GRCh38)
16:3148732 (GRCh37)
Canonical SPDI:: NC_000016.10:3098730:T:A
Gene:: ZSCAN10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.3098731T>A, NC_000016.9:g.3148732T>A

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