SNP Links for Gene (Select 8529) - SNP

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Select item 14915167161.

rs1491516716 has merged into rs10638260 [Homo sapiens]

Variant type:: DELINS
Alleles:: TCTATCTATCTATCTATCTA>-,TCTA,TCTATCTA,TCTATCTATCTA,TCTATCTATCTATCTA,TCTATCTATCTATCTATCTATCTA,TCTATCTATCTATCTATCTATCTATCTA,TCTATCTATCTATCTATCTATCTATCTATCTA,TCTATCTATCTATCTATCTATCTATCTATCTATCTA [Show Flanks]
Chromosome:: 19:15896257 (GRCh38)
19:16007067 (GRCh37)
Canonical SPDI:: NC_000019.10:15896233:CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA:CTATCTATCTATCTATCTATCTA,NC_000019.10:15896233:CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA:CTATCTATCTATCTATCTATCTATCTA,NC_000019.10:15896233:CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA:CTATCTATCTATCTATCTATCTATCTATCTA,NC_000019.10:15896233:CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA:CTATCTATCTATCTATCTATCTATCTATCTATCTA,NC_000019.10:15896233:CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA:CTATCTATCTATCTATCTATCTATCTATCTATCTATCTA,NC_000019.10:15896233:CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA:CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA,NC_000019.10:15896233:CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA:CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA,NC_000019.10:15896233:CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA:CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA,NC_000019.10:15896233:CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA:CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA
Gene:: CYP4F2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTATCTATCTATCTATCTATCTATCTA=0./0 (ALFA)
-=0.3255/1630 (1000Genomes)
HGVS:: NC_000019.10:g.15896237TCTA[5], NC_000019.10:g.15896237TCTA[6], NC_000019.10:g.15896237TCTA[7], NC_000019.10:g.15896237TCTA[8], NC_000019.10:g.15896237TCTA[9], NC_000019.10:g.15896237TCTA[11], NC_000019.10:g.15896237TCTA[12], NC_000019.10:g.15896237TCTA[13], NC_000019.10:g.15896237TCTA[14], NC_000019.9:g.16007047TCTA[5], NC_000019.9:g.16007047TCTA[6], NC_000019.9:g.16007047TCTA[7], NC_000019.9:g.16007047TCTA[8], NC_000019.9:g.16007047TCTA[9], NC_000019.9:g.16007047TCTA[11], NC_000019.9:g.16007047TCTA[12], NC_000019.9:g.16007047TCTA[13], NC_000019.9:g.16007047TCTA[14], NG_007971.2:g.6802ATAG[5], NG_007971.2:g.6802ATAG[6], NG_007971.2:g.6802ATAG[7], NG_007971.2:g.6802ATAG[8], NG_007971.2:g.6802ATAG[9], NG_007971.2:g.6802ATAG[11], NG_007971.2:g.6802ATAG[12], NG_007971.2:g.6802ATAG[13], NG_007971.2:g.6802ATAG[14]

Select item 14905313302.

rs1490531330 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 19:15885357 (GRCh38)
19:15996167 (GRCh37)
Canonical SPDI:: NC_000019.10:15885356:T:C,NC_000019.10:15885356:T:G
Gene:: CYP4F2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000021/3 (GnomAD)
C=0.000076/20 (TOPMED)
C=0.000177/3 (TOMMO)
C=0.001092/2 (Korea1K)
C=0.001711/5 (KOREAN)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000019.10:g.15885357T>C, NC_000019.10:g.15885357T>G, NC_000019.9:g.15996167T>C, NC_000019.9:g.15996167T>G, NG_007971.2:g.17718A>G, NG_007971.2:g.17718A>C

Select item 14904384683.

rs1490438468 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:15885113 (GRCh38)
19:15995923 (GRCh37)
Canonical SPDI:: NC_000019.10:15885112:C:T
Gene:: CYP4F2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.15885113C>T, NC_000019.9:g.15995923C>T, NG_007971.2:g.17962G>A

Select item 14901904314.

rs1490190431 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:15891439 (GRCh38)
19:16002249 (GRCh37)
Canonical SPDI:: NC_000019.10:15891438:C:G
Gene:: CYP4F2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.15891439C>G, NC_000019.9:g.16002249C>G, NG_007971.2:g.11636G>C

Select item 14901022465.

rs1490102246 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:15884021 (GRCh38)
19:15994831 (GRCh37)
Canonical SPDI:: NC_000019.10:15884020:C:T
Gene:: CYP4F2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000043/6 (GnomAD)
HGVS:: NC_000019.10:g.15884021C>T, NC_000019.9:g.15994831C>T, NG_007971.2:g.19054G>A

Select item 14900198706.

rs1490019870 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:15890985 (GRCh38)
19:16001795 (GRCh37)
Canonical SPDI:: NC_000019.10:15890984:A:G
Gene:: CYP4F2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000019.10:g.15890985A>G, NC_000019.9:g.16001795A>G, NG_007971.2:g.12090T>C

Select item 14896667067.

rs1489666706 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:15900119 (GRCh38)
19:16010929 (GRCh37)
Canonical SPDI:: NC_000019.10:15900118:A:G
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.15900119A>G, NC_000019.9:g.16010929A>G, NG_007971.2:g.2956T>C

Select item 14893854278.

rs1489385427 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 19:15878292 (GRCh38)
19:15989102 (GRCh37)
Canonical SPDI:: NC_000019.10:15878291:T:A,NC_000019.10:15878291:T:C
Gene:: CYP4F2 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000019.10:g.15878292T>A, NC_000019.10:g.15878292T>C, NC_000019.9:g.15989102T>A, NC_000019.9:g.15989102T>C, NG_007971.2:g.24783A>T, NG_007971.2:g.24783A>G, NM_001082.5:c.*479A>T, NM_001082.5:c.*479A>G, NM_001082.4:c.*479A>T, NM_001082.4:c.*479A>G, NM_001082.3:c.*479A>T, NM_001082.3:c.*479A>G

Select item 14893715659.

rs1489371565 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 19:15889566 (GRCh38)
19:16000376 (GRCh37)
Canonical SPDI:: NC_000019.10:15889565:C:A,NC_000019.10:15889565:C:T
Gene:: CYP4F2 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: A=0.000043/1 (ALFA)
A=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000019.10:g.15889566C>A, NC_000019.10:g.15889566C>T, NC_000019.9:g.16000376C>A, NC_000019.9:g.16000376C>T, NG_007971.2:g.13509G>T, NG_007971.2:g.13509G>A, NM_001082.5:c.775G>T, NM_001082.5:c.775G>A, NM_001082.4:c.775G>T, NM_001082.4:c.775G>A, NM_001082.3:c.775G>T, NM_001082.3:c.775G>A, NP_001073.3:p.Ala259Ser, NP_001073.3:p.Ala259Thr

Select item 148889448710.

rs1488894487 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:15892656 (GRCh38)
19:16003466 (GRCh37)
Canonical SPDI:: NC_000019.10:15892655:C:T
Gene:: CYP4F2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.15892656C>T, NC_000019.9:g.16003466C>T, NG_007971.2:g.10419G>A

Select item 148885145311.

rs1488851453 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:15893701 (GRCh38)
19:16004511 (GRCh37)
Canonical SPDI:: NC_000019.10:15893700:C:T
Gene:: CYP4F2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.15893701C>T, NC_000019.9:g.16004511C>T, NG_007971.2:g.9374G>A

Select item 148884848712.

rs1488848487 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 19:15899671 (GRCh38)
19:16010481 (GRCh37)
Canonical SPDI:: NC_000019.10:15899670:G:A,NC_000019.10:15899670:G:T
Gene:: CYP4F2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000142/2 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.15899671G>A, NC_000019.10:g.15899671G>T, NC_000019.9:g.16010481G>A, NC_000019.9:g.16010481G>T, NG_007971.2:g.3404C>T, NG_007971.2:g.3404C>A

Select item 148876566813.

rs1488765668 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 19:15878393 (GRCh38)
19:15989203 (GRCh37)
Canonical SPDI:: NC_000019.10:15878392:T:A
Gene:: CYP4F2 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000546/1 (Korea1K)
HGVS:: NC_000019.10:g.15878393T>A, NC_000019.9:g.15989203T>A, NG_007971.2:g.24682A>T, NM_001082.5:c.*378A>T, NM_001082.4:c.*378A>T, NM_001082.3:c.*378A>T

Select item 148841700114.

rs1488417001 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:15899996 (GRCh38)
19:16010806 (GRCh37)
Canonical SPDI:: NC_000019.10:15899995:C:A
Gene:: CYP4F2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.15899996C>A, NC_000019.9:g.16010806C>A, NG_007971.2:g.3079G>T

Select item 148841029015.

rs1488410290 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 19:15897355 (GRCh38)
19:16008165 (GRCh37)
Canonical SPDI:: NC_000019.10:15897354:G:A,NC_000019.10:15897354:G:T
Gene:: CYP4F2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000052/7 (GnomAD)
A=0.000212/4 (TOMMO)
HGVS:: NC_000019.10:g.15897355G>A, NC_000019.10:g.15897355G>T, NC_000019.9:g.16008165G>A, NC_000019.9:g.16008165G>T, NG_007971.2:g.5720C>T, NG_007971.2:g.5720C>A

Select item 148840668516.

rs1488406685 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAA>- [Show Flanks]
Chromosome:: 19:15877875 (GRCh38)
19:15988685 (GRCh37)
Canonical SPDI:: NC_000019.10:15877871:GAAGAA:GAA
Gene:: CYP4F2 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GAAGAA=0.000071/1 (ALFA)
-=0.000019/5 (TOPMED)
-=0.000029/4 (GnomAD)
HGVS:: NC_000019.10:g.15877872GAA[1], NC_000019.9:g.15988682GAA[1], NG_007971.2:g.25198TTC[1]

Select item 148839530217.

rs1488395302 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:15886232 (GRCh38)
19:15997042 (GRCh37)
Canonical SPDI:: NC_000019.10:15886231:G:T
Gene:: CYP4F2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000019.10:g.15886232G>T, NC_000019.9:g.15997042G>T, NG_007971.2:g.16843C>A

Select item 148826610318.

rs1488266103 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 19:15889951 (GRCh38)
19:16000761 (GRCh37)
Canonical SPDI:: NC_000019.10:15889945:TCTCTCT:TCTCT
Gene:: CYP4F2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TCTCT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.15889947CT[2], NC_000019.9:g.16000757CT[2], NG_007971.2:g.13124GA[2]

Select item 148813368319.

rs1488133683 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:15887910 (GRCh38)
19:15998720 (GRCh37)
Canonical SPDI:: NC_000019.10:15887909:A:G
Gene:: CYP4F2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.15887910A>G, NC_000019.9:g.15998720A>G, NG_007971.2:g.15165T>C

Select item 148785408120.

rs1487854081 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:15881738 (GRCh38)
19:15992548 (GRCh37)
Canonical SPDI:: NC_000019.10:15881737:G:T
Gene:: CYP4F2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.15881738G>T, NC_000019.9:g.15992548G>T, NG_007971.2:g.21337C>A

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