SNP Links for Gene (Select 8543) - SNP

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Select item 14915565791.

rs1491556579 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: 1:87335037 (GRCh38)
1:87800720 (GRCh37)
Canonical SPDI:: NC_000001.11:87335036:AG:
Gene:: LMO4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00008/1 (ALFA)
HGVS:: NC_000001.11:g.87335037_87335038del, NC_000001.10:g.87800720_87800721del

Select item 14915084212.

rs1491508421 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 1:87339239 (GRCh38)
1:87804923 (GRCh37)
Canonical SPDI:: NC_000001.11:87339239:A:AA
Gene:: LMO4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
A=0.000022/3 (GnomAD)
HGVS:: NC_000001.11:g.87339240dup, NC_000001.10:g.87804923dup

Select item 14914538443.

rs1491453844 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTT [Show Flanks]
Chromosome:: 1:87330005 (GRCh38)
1:87795689 (GRCh37)
Canonical SPDI:: NC_000001.11:87330005:TT:TTCTT
Gene:: LMO4 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTCTT=0.00017/2 (ALFA)
TTC=0.00007/7 (GnomAD)
HGVS:: NC_000001.11:g.87330007_87330008insCTT, NC_000001.10:g.87795690_87795691insCTT, NG_053401.1:g.599_600insCTT

Select item 14914469374.

rs1491446937 has merged into rs143075026 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGGGG>-,GG,GGG,GGGG,GGGGGG,GGGGGGG,GGGGGGGG [Show Flanks]
Chromosome:: 1:87335043 (GRCh38)
1:87800726 (GRCh37)
Canonical SPDI:: NC_000001.11:87335037:GGGGGGGGGG:GGGGG,NC_000001.11:87335037:GGGGGGGGGG:GGGGGGG,NC_000001.11:87335037:GGGGGGGGGG:GGGGGGGG,NC_000001.11:87335037:GGGGGGGGGG:GGGGGGGGG,NC_000001.11:87335037:GGGGGGGGGG:GGGGGGGGGGG,NC_000001.11:87335037:GGGGGGGGGG:GGGGGGGGGGGG,NC_000001.11:87335037:GGGGGGGGGG:GGGGGGGGGGGGG
Gene:: LMO4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGG=0./0 (ALFA)
-=0.11054/451 (1000Genomes)
HGVS:: NC_000001.11:g.87335043_87335047del, NC_000001.11:g.87335045_87335047del, NC_000001.11:g.87335046_87335047del, NC_000001.11:g.87335047del, NC_000001.11:g.87335047dup, NC_000001.11:g.87335046_87335047dup, NC_000001.11:g.87335045_87335047dup, NC_000001.10:g.87800726_87800730del, NC_000001.10:g.87800728_87800730del, NC_000001.10:g.87800729_87800730del, NC_000001.10:g.87800730del, NC_000001.10:g.87800730dup, NC_000001.10:g.87800729_87800730dup, NC_000001.10:g.87800728_87800730dup

Select item 14913905045.

rs1491390504 [Homo sapiens]

Variant type:: INS
Alleles:: ->CA [Show Flanks]
Chromosome:: 1:87337185 (GRCh38)
1:87802869 (GRCh37)
Canonical SPDI:: NC_000001.11:87337185::CA
Gene:: LMO4 (Varview)
Functional Consequence:: intron_variant
Validated:: by cluster
HGVS:: NC_000001.11:g.87337185_87337186insCA, NC_000001.10:g.87802868_87802869insCA

Select item 14913656906.

rs1491365690 has merged into rs397949898 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCCCCCCCCCC>-,CC,CCCC,CCCCCCC,CCCCCCCC,CCCCCCCCC,CCCCCCCCCC,CCCCCCCCCCCC,CCCCCCCCCCCCC,CCCCCCCCCCCCCC,CCCCCCCCCCCCCCC,CCCCCCCCCCCCCCCC,CCCCCCCCCCCCCCCCCC [Show Flanks]
Chromosome:: 1:87331069 (GRCh38)
1:87796752 (GRCh37)
Canonical SPDI:: NC_000001.11:87331063:CCCCCCCCCCCCCCCC:CCCCC,NC_000001.11:87331063:CCCCCCCCCCCCCCCC:CCCCCCC,NC_000001.11:87331063:CCCCCCCCCCCCCCCC:CCCCCCCCC,NC_000001.11:87331063:CCCCCCCCCCCCCCCC:CCCCCCCCCCCC,NC_000001.11:87331063:CCCCCCCCCCCCCCCC:CCCCCCCCCCCCC,NC_000001.11:87331063:CCCCCCCCCCCCCCCC:CCCCCCCCCCCCCC,NC_000001.11:87331063:CCCCCCCCCCCCCCCC:CCCCCCCCCCCCCCC,NC_000001.11:87331063:CCCCCCCCCCCCCCCC:CCCCCCCCCCCCCCCCC,NC_000001.11:87331063:CCCCCCCCCCCCCCCC:CCCCCCCCCCCCCCCCCC,NC_000001.11:87331063:CCCCCCCCCCCCCCCC:CCCCCCCCCCCCCCCCCCC,NC_000001.11:87331063:CCCCCCCCCCCCCCCC:CCCCCCCCCCCCCCCCCCCC,NC_000001.11:87331063:CCCCCCCCCCCCCCCC:CCCCCCCCCCCCCCCCCCCCC,NC_000001.11:87331063:CCCCCCCCCCCCCCCC:CCCCCCCCCCCCCCCCCCCCCCC
Gene:: LMO4 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCCC=0./0 (ALFA)
-=0.2/14 (NorthernSweden)
HGVS:: NC_000001.11:g.87331069_87331079del, NC_000001.11:g.87331071_87331079del, NC_000001.11:g.87331073_87331079del, NC_000001.11:g.87331076_87331079del, NC_000001.11:g.87331077_87331079del, NC_000001.11:g.87331078_87331079del, NC_000001.11:g.87331079del, NC_000001.11:g.87331079dup, NC_000001.11:g.87331078_87331079dup, NC_000001.11:g.87331077_87331079dup, NC_000001.11:g.87331076_87331079dup, NC_000001.11:g.87331075_87331079dup, NC_000001.11:g.87331073_87331079dup, NC_000001.10:g.87796752_87796762del, NC_000001.10:g.87796754_87796762del, NC_000001.10:g.87796756_87796762del, NC_000001.10:g.87796759_87796762del, NC_000001.10:g.87796760_87796762del, NC_000001.10:g.87796761_87796762del, NC_000001.10:g.87796762del, NC_000001.10:g.87796762dup, NC_000001.10:g.87796761_87796762dup, NC_000001.10:g.87796760_87796762dup, NC_000001.10:g.87796759_87796762dup, NC_000001.10:g.87796758_87796762dup, NC_000001.10:g.87796756_87796762dup, NG_053401.1:g.1661_1671del, NG_053401.1:g.1663_1671del, NG_053401.1:g.1665_1671del, NG_053401.1:g.1668_1671del, NG_053401.1:g.1669_1671del, NG_053401.1:g.1670_1671del, NG_053401.1:g.1671del, NG_053401.1:g.1671dup, NG_053401.1:g.1670_1671dup, NG_053401.1:g.1669_1671dup, NG_053401.1:g.1668_1671dup, NG_053401.1:g.1667_1671dup, NG_053401.1:g.1665_1671dup

Select item 14912874197.

rs1491287419 has merged into rs895271767 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTT>-,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 1:87330012 (GRCh38)
1:87795695 (GRCh37)
Canonical SPDI:: NC_000001.11:87330004:TTTTTTTTTTTTTTTTTT:TTTTTTT,NC_000001.11:87330004:TTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000001.11:87330004:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000001.11:87330004:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000001.11:87330004:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000001.11:87330004:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000001.11:87330004:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000001.11:87330004:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000001.11:87330004:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000001.11:87330004:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000001.11:87330004:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000001.11:87330004:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000001.11:87330004:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:87330004:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LMO4 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTT=0./0 (ALFA)
HGVS:: NC_000001.11:g.87330012_87330022del, NC_000001.11:g.87330015_87330022del, NC_000001.11:g.87330016_87330022del, NC_000001.11:g.87330017_87330022del, NC_000001.11:g.87330018_87330022del, NC_000001.11:g.87330019_87330022del, NC_000001.11:g.87330020_87330022del, NC_000001.11:g.87330021_87330022del, NC_000001.11:g.87330022del, NC_000001.11:g.87330022dup, NC_000001.11:g.87330021_87330022dup, NC_000001.11:g.87330020_87330022dup, NC_000001.11:g.87330019_87330022dup, NC_000001.11:g.87330017_87330022dup, NC_000001.10:g.87795695_87795705del, NC_000001.10:g.87795698_87795705del, NC_000001.10:g.87795699_87795705del, NC_000001.10:g.87795700_87795705del, NC_000001.10:g.87795701_87795705del, NC_000001.10:g.87795702_87795705del, NC_000001.10:g.87795703_87795705del, NC_000001.10:g.87795704_87795705del, NC_000001.10:g.87795705del, NC_000001.10:g.87795705dup, NC_000001.10:g.87795704_87795705dup, NC_000001.10:g.87795703_87795705dup, NC_000001.10:g.87795702_87795705dup, NC_000001.10:g.87795700_87795705dup, NG_053401.1:g.604_614del, NG_053401.1:g.607_614del, NG_053401.1:g.608_614del, NG_053401.1:g.609_614del, NG_053401.1:g.610_614del, NG_053401.1:g.611_614del, NG_053401.1:g.612_614del, NG_053401.1:g.613_614del, NG_053401.1:g.614del, NG_053401.1:g.614dup, NG_053401.1:g.613_614dup, NG_053401.1:g.612_614dup, NG_053401.1:g.611_614dup, NG_053401.1:g.609_614dup

Select item 14912819598.

rs1491281959 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 1:87337186 (GRCh38)
1:87802869 (GRCh37)
Canonical SPDI:: NC_000001.11:87337184:TTT:T
Gene:: LMO4 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000001.11:g.87337186_87337187del, NC_000001.10:g.87802869_87802870del

Select item 14911661099.

rs1491166109 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 1:87333956 (GRCh38)
1:87799639 (GRCh37)
Canonical SPDI:: NC_000001.11:87333954:ACA:A
Gene:: LMO4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
-=0.000043/6 (GnomAD)
HGVS:: NC_000001.11:g.87333956_87333957del, NC_000001.10:g.87799639_87799640del

Select item 149091174310.

rs1490911743 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:87327129 (GRCh38)
1:87792812 (GRCh37)
Canonical SPDI:: NC_000001.11:87327128:A:T
Gene:: LMO4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.87327129A>T, NC_000001.10:g.87792812A>T

Select item 149087859311.

rs1490878593 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:87339060 (GRCh38)
1:87804743 (GRCh37)
Canonical SPDI:: NC_000001.11:87339059:G:A,NC_000001.11:87339059:G:C
Gene:: LMO4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.87339060G>A, NC_000001.11:g.87339060G>C, NC_000001.10:g.87804743G>A, NC_000001.10:g.87804743G>C

Select item 149084298112.

rs1490842981 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 1:87338107 (GRCh38)
1:87803790 (GRCh37)
Canonical SPDI:: NC_000001.11:87338106:C:A,NC_000001.11:87338106:C:G,NC_000001.11:87338106:C:T
Gene:: LMO4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.87338107C>A, NC_000001.11:g.87338107C>G, NC_000001.11:g.87338107C>T, NC_000001.10:g.87803790C>A, NC_000001.10:g.87803790C>G, NC_000001.10:g.87803790C>T

Select item 149083181013.

rs1490831810 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:87333027 (GRCh38)
1:87798710 (GRCh37)
Canonical SPDI:: NC_000001.11:87333026:G:C
Gene:: LMO4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.87333027G>C, NC_000001.10:g.87798710G>C

Select item 149060626714.

rs1490606267 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:87326682 (GRCh38)
1:87792365 (GRCh37)
Canonical SPDI:: NC_000001.11:87326681:T:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.87326682T>C, NC_000001.10:g.87792365T>C

Select item 149056850615.

rs1490568506 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:87332834 (GRCh38)
1:87798517 (GRCh37)
Canonical SPDI:: NC_000001.11:87332833:A:G
Gene:: LMO4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000895/4 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000035/1 (TOMMO)
G=0.000893/4 (Estonian)
HGVS:: NC_000001.11:g.87332834A>G, NC_000001.10:g.87798517A>G

Select item 149035520616.

rs1490355206 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:87328472 (GRCh38)
1:87794155 (GRCh37)
Canonical SPDI:: NC_000001.11:87328471:T:C
Gene:: LMO4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.87328472T>C, NC_000001.10:g.87794155T>C, NM_006769.3:c.-776T>C

Select item 149035432517.

rs1490354325 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:87349112 (GRCh38)
1:87814795 (GRCh37)
Canonical SPDI:: NC_000001.11:87349111:G:C
Gene:: LMO4 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.87349112G>C, NC_000001.10:g.87814795G>C

Select item 149035292818.

rs1490352928 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:87338487 (GRCh38)
1:87804170 (GRCh37)
Canonical SPDI:: NC_000001.11:87338486:T:C
Gene:: LMO4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.87338487T>C, NC_000001.10:g.87804170T>C

Select item 149027846219.

rs1490278462 has merged into rs372002864 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATA>- [Show Flanks]
Chromosome:: 1:87346767 (GRCh38)
1:87812450 (GRCh37)
Canonical SPDI:: NC_000001.11:87346762:AATAATA:AATA
Gene:: LMO4 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AATA=0./0 (ALFA)
-=0.000021/3 (GnomAD)
-=0.000023/6 (TOPMED)
HGVS:: NC_000001.11:g.87346764ATA[1], NC_000001.10:g.87812447ATA[1], NM_006769.4:c.*1968ATA[1], NM_006769.3:c.*1968ATA[1], XM_047432941.1:c.*1968ATA[1], NM_001369491.1:c.*1968ATA[1]

Select item 149007727020.

rs1490077270 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 1:87331694 (GRCh38)
1:87797377 (GRCh37)
Canonical SPDI:: NC_000001.11:87331693:G:C,NC_000001.11:87331693:G:T
Gene:: LMO4 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.87331694G>C, NC_000001.11:g.87331694G>T, NC_000001.10:g.87797377G>C, NC_000001.10:g.87797377G>T, XM_047432941.1:c.-124G>C, XM_047432941.1:c.-124G>T

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