SNP Links for Gene (Select 9093) - SNP

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Select item 14915839681.

rs1491583968 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 16:4452109 (GRCh38)
16:4502110 (GRCh37)
Canonical SPDI:: NC_000016.10:4452107:TGT:T
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.4452109_4452110del, NC_000016.9:g.4502110_4502111del, NG_029866.1:g.31305_31306del, NT_187608.1:g.154432_154433del

Select item 14915692242.

rs1491569224 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->G
Chromosome:: no mapping
Canonical SPDI:

Select item 14915610833.

rs1491561083 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 16:4445926 (GRCh38)
16:4495927 (GRCh37)
Canonical SPDI:: NC_000016.10:4445924:TCT:T
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000084/1 (ALFA)
-=0.00013/18 (GnomAD)
-=0.000283/5 (TOMMO)
HGVS:: NC_000016.10:g.4445926_4445927del, NC_000016.9:g.4495927_4495928del, NG_029866.1:g.25122_25123del, NT_187608.1:g.148249_148250del

Select item 14912239224.

rs1491223922 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TAG [Show Flanks]
Chromosome:: 16:4452108 (GRCh38)
16:4502110 (GRCh37)
Canonical SPDI:: NC_000016.10:4452108:GTAG:GTAGTAG
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GTAGTAG=0./0 (ALFA)
GTA=0.000019/5 (TOPMED)
GTA=0.000021/3 (GnomAD)
HGVS:: NC_000016.10:g.4452110_4452112dup, NC_000016.9:g.4502111_4502113dup, NG_029866.1:g.31306_31308dup, NT_187608.1:g.154433_154435dup

Select item 14911034645.

rs1491103464 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 16:4444333 (GRCh38)
16:4494335 (GRCh37)
Canonical SPDI:: NC_000016.10:4444333:C:CC
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.4444334dup, NC_000016.9:g.4494335dup, NG_029866.1:g.23530dup, NT_187608.1:g.146657dup

Select item 14910678146.

rs1491067814 has merged into rs368431722 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAA>-,AAA,AAAA,AAAAA,AAAAAA,AAAAAAAA [Show Flanks]
Chromosome:: 16:4451906 (GRCh38)
16:4501907 (GRCh37)
Canonical SPDI:: NC_000016.10:4451896:AAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000016.10:4451896:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000016.10:4451896:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000016.10:4451896:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000016.10:4451896:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000016.10:4451896:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAA=0./0 (ALFA)
A=0.277/164 (NorthernSweden)
A=0.325/13 (GENOME_DK)
A=0.4778/2393 (1000Genomes)
HGVS:: NC_000016.10:g.4451906_4451912del, NC_000016.10:g.4451909_4451912del, NC_000016.10:g.4451910_4451912del, NC_000016.10:g.4451911_4451912del, NC_000016.10:g.4451912del, NC_000016.10:g.4451912dup, NC_000016.9:g.4501907_4501913del, NC_000016.9:g.4501910_4501913del, NC_000016.9:g.4501911_4501913del, NC_000016.9:g.4501912_4501913del, NC_000016.9:g.4501913del, NC_000016.9:g.4501913dup, NG_029866.1:g.31102_31108del, NG_029866.1:g.31105_31108del, NG_029866.1:g.31106_31108del, NG_029866.1:g.31107_31108del, NG_029866.1:g.31108del, NG_029866.1:g.31108dup, NT_187608.1:g.154229_154235del, NT_187608.1:g.154232_154235del, NT_187608.1:g.154233_154235del, NT_187608.1:g.154234_154235del, NT_187608.1:g.154235del, NT_187608.1:g.154235dup

Select item 14909971377.

rs1490997137 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:4451898 (GRCh38)
16:4501899 (GRCh37)
Canonical SPDI:: NC_000016.10:4451897:A:G
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00008/2 (GnomAD)
HGVS:: NC_000016.10:g.4451898A>G, NC_000016.9:g.4501899A>G, NG_029866.1:g.31094A>G, NT_187608.1:g.154221A>G

Select item 14907862908.

rs1490786290 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:4444585 (GRCh38)
16:4494586 (GRCh37)
Canonical SPDI:: NC_000016.10:4444584:C:T
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.00003/8 (TOPMED)
HGVS:: NC_000016.10:g.4444585C>T, NC_000016.9:g.4494586C>T, NG_029866.1:g.23781C>T, NT_187608.1:g.146908C>T

Select item 14906020579.

rs1490602057 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:4447435 (GRCh38)
16:4497436 (GRCh37)
Canonical SPDI:: NC_000016.10:4447434:C:T
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.4447435C>T, NC_000016.9:g.4497436C>T, NG_029866.1:g.26631C>T, NT_187608.1:g.149758C>T

Select item 149055092510.

rs1490550925 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 16:4446566 (GRCh38)
16:4496567 (GRCh37)
Canonical SPDI:: NC_000016.10:4446565:A:C
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.4446566A>C, NC_000016.9:g.4496567A>C, NG_029866.1:g.25762A>C, NT_187608.1:g.148889A>C

Select item 149049695411.

rs1490496954 [Homo sapiens]

Variant type:: DELINS
Alleles:: TGG>- [Show Flanks]
Chromosome:: 16:4430428 (GRCh38)
16:4480429 (GRCh37)
Canonical SPDI:: NC_000016.10:4430423:GTGGTGG:GTGG
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GTGG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.4430425TGG[1], NC_000016.9:g.4480426TGG[1], NG_029866.1:g.9621TGG[1], NT_187608.1:g.132748TGG[1]

Select item 149049148012.

rs1490491480 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:4432120 (GRCh38)
16:4482121 (GRCh37)
Canonical SPDI:: NC_000016.10:4432119:T:C
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.0002/1 (ALFA)
C=0.0002/1 (Estonian)
HGVS:: NC_000016.10:g.4432120T>C, NC_000016.9:g.4482121T>C, NG_029866.1:g.11316T>C, NT_187608.1:g.134443T>C

Select item 149045845213.

rs1490458452 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 16:4439018 (GRCh38)
16:4489019 (GRCh37)
Canonical SPDI:: NC_000016.10:4439017:G:C,NC_000016.10:4439017:G:T
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.4439018G>C, NC_000016.10:g.4439018G>T, NC_000016.9:g.4489019G>C, NC_000016.9:g.4489019G>T, NG_029866.1:g.18214G>C, NG_029866.1:g.18214G>T, NT_187608.1:g.141341G>C, NT_187608.1:g.141341G>T

Select item 149043261714.

rs1490432617 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:4439836 (GRCh38)
16:4489837 (GRCh37)
Canonical SPDI:: NC_000016.10:4439835:C:T
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.4439836C>T, NC_000016.9:g.4489837C>T, NG_029866.1:g.19032C>T, NT_187608.1:g.142159C>T

Select item 149034004015.

rs1490340040 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:4435261 (GRCh38)
16:4485262 (GRCh37)
Canonical SPDI:: NC_000016.10:4435260:G:A
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000016.10:g.4435261G>A, NC_000016.9:g.4485262G>A, NG_029866.1:g.14457G>A, NT_187608.1:g.137584G>A

Select item 149021965016.

rs1490219650 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:4433129 (GRCh38)
16:4483130 (GRCh37)
Canonical SPDI:: NC_000016.10:4433128:G:A
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.4433129G>A, NC_000016.9:g.4483130G>A, NG_029866.1:g.12325G>A, NT_187608.1:g.135452G>A

Select item 149016649317.

rs1490166493 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 16:4431969 (GRCh38)
16:4481970 (GRCh37)
Canonical SPDI:: NC_000016.10:4431968:T:G
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.4431969T>G, NC_000016.9:g.4481970T>G, NG_029866.1:g.11165T>G, NT_187608.1:g.134292T>G

Select item 149010092418.

rs1490100924 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:4429834 (GRCh38)
16:4479835 (GRCh37)
Canonical SPDI:: NC_000016.10:4429833:C:A
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.0065/19 (KOREAN)
HGVS:: NC_000016.10:g.4429834C>A, NC_000016.9:g.4479835C>A, NG_029866.1:g.9030C>A, NT_187608.1:g.132157C>A

Select item 149001722719.

rs1490017227 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGACCAGCCTGG>- [Show Flanks]
Chromosome:: 16:4452708 (GRCh38)
16:4502709 (GRCh37)
Canonical SPDI:: NC_000016.10:4452706:GAGACCAGCCTGG:G
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.4452708_4452719del, NC_000016.9:g.4502709_4502720del, NG_029866.1:g.31904_31915del, NT_187608.1:g.155031_155042del

Select item 149001376220.

rs1490013762 [Homo sapiens]

Variant type:: DELINS
Alleles:: GCCACCACGCC>- [Show Flanks]
Chromosome:: 16:4428101 (GRCh38)
16:4478102 (GRCh37)
Canonical SPDI:: NC_000016.10:4428098:CCGCCACCACGCC:CC
Gene:: DNAJA3 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000016.10:g.4428101_4428111del, NC_000016.9:g.4478102_4478112del, NG_029866.1:g.7297_7307del, NT_187608.1:g.130424_130434del

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