SNP Links for Gene (Select 926) - SNP

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Select item 14914331851.

rs1491433185 has merged into rs1179674998 [Homo sapiens]

Variant type:: DELINS
Alleles:: CG>-,CGCG [Show Flanks]
Chromosome:: 2:86828339 (GRCh38)
2:87055462 (GRCh37)
Canonical SPDI:: NC_000002.12:86828337:GCG:G,NC_000002.12:86828337:GCG:GCGCG
Gene:: CD8B (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCGCG=0.000084/1 (ALFA)
GC=0.000057/8 (GnomAD)
-=0.003114/12 (ALSPAC)
-=0.005663/21 (TWINSUK)
HGVS:: NC_000002.12:g.86828339_86828340del, NC_000002.12:g.86828339_86828340dup, NC_000002.11:g.87055462_87055463del, NC_000002.11:g.87055462_87055463dup

Select item 14911163142.

rs1491116314 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 2:86823991 (GRCh38)
2:87051114 (GRCh37)
Canonical SPDI:: NC_000002.12:86823990:AT:
Gene:: CD8B (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000023/6 (TOPMED)
-=0.000036/5 (GnomAD)
HGVS:: NC_000002.12:g.86823991_86823992del, NC_000002.11:g.87051114_87051115del

Select item 14910904393.

rs1491090439 has merged into rs67145087 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTT>-,TTT,TTTT,TTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTTTTT [Show Flanks]
Chromosome:: 2:86826834 (GRCh38)
2:87053957 (GRCh37)
Canonical SPDI:: NC_000002.12:86826824:TTTTTTTTTTTTTTT:TTTTTTTTT,NC_000002.12:86826824:TTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000002.12:86826824:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000002.12:86826824:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000002.12:86826824:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000002.12:86826824:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000002.12:86826824:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000002.12:86826824:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT
Gene:: CD8B (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTTT=0./0 (ALFA)
-=0.1961/982 (1000Genomes)
HGVS:: NC_000002.12:g.86826834_86826839del, NC_000002.12:g.86826837_86826839del, NC_000002.12:g.86826838_86826839del, NC_000002.12:g.86826839del, NC_000002.12:g.86826839dup, NC_000002.12:g.86826838_86826839dup, NC_000002.12:g.86826837_86826839dup, NC_000002.12:g.86826833_86826839dup, NC_000002.11:g.87053957_87053962del, NC_000002.11:g.87053960_87053962del, NC_000002.11:g.87053961_87053962del, NC_000002.11:g.87053962del, NC_000002.11:g.87053962dup, NC_000002.11:g.87053961_87053962dup, NC_000002.11:g.87053960_87053962dup, NC_000002.11:g.87053956_87053962dup, NM_001013677.1:c.*574dup, NM_001013677.1:c.*570_*574del, NM_001013677.1:c.*573_*574del, NM_001013677.1:c.*574del, NM_001013677.1:c.*573_*574dup, NM_001013677.1:c.*572_*574dup, NM_001013677.1:c.*571_*574dup, NM_001013677.1:c.*567_*574dup

Select item 14909790414.

rs1490979041 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 2:86856761 (GRCh38)
2:87083884 (GRCh37)
Canonical SPDI:: NC_000002.12:86856760:C:A,NC_000002.12:86856760:C:G
Gene:: CD8B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.86856761C>A, NC_000002.12:g.86856761C>G, NC_000002.11:g.87083884C>A, NC_000002.11:g.87083884C>G

Select item 14909757005.

rs1490975700 [Homo sapiens]

Variant type:: SNV:
Alleles:: CAAAATGGAGATTGCATTG>-
Chromosome:: no mapping
Canonical SPDI:

Select item 14909503806.

rs1490950380 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 2:86855858 (GRCh38)
2:87082981 (GRCh37)
Canonical SPDI:: NC_000002.12:86855857:G:A,NC_000002.12:86855857:G:C,NC_000002.12:86855857:G:T
Gene:: CD8B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.86855858G>A, NC_000002.12:g.86855858G>C, NC_000002.12:g.86855858G>T, NC_000002.11:g.87082981G>A, NC_000002.11:g.87082981G>C, NC_000002.11:g.87082981G>T

Select item 14909174637.

rs1490917463 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:86840749 (GRCh38)
2:87067872 (GRCh37)
Canonical SPDI:: NC_000002.12:86840748:C:G
Gene:: CD8B (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.86840749C>G, NC_000002.11:g.87067872C>G, NM_004931.5:c.*1558G>C, XM_011533164.3:c.*1508G>C, XM_011533164.2:c.*1508G>C

Select item 14908476858.

rs1490847685 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:86826908 (GRCh38)
2:87054031 (GRCh37)
Canonical SPDI:: NC_000002.12:86826907:G:A
Gene:: CD8B (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000002.12:g.86826908G>A, NC_000002.11:g.87054031G>A, NM_001013677.1:c.*643G>A

Select item 14907828839.

rs1490782883 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:86833816 (GRCh38)
2:87060939 (GRCh37)
Canonical SPDI:: NC_000002.12:86833815:A:C
Gene:: CD8B (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.86833816A>C, NC_000002.11:g.87060939A>C

Select item 149077803810.

rs1490778038 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:86834745 (GRCh38)
2:87061868 (GRCh37)
Canonical SPDI:: NC_000002.12:86834744:A:G
Gene:: CD8B (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.86834745A>G, NC_000002.11:g.87061868A>G

Select item 149073086211.

rs1490730862 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:86860412 (GRCh38)
2:87087535 (GRCh37)
Canonical SPDI:: NC_000002.12:86860411:C:T
Gene:: CD8B (Varview), ANAPC1P1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000002.12:g.86860412C>T, NC_000002.11:g.87087535C>T

Select item 149070033112.

rs1490700331 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:86862399 (GRCh38)
2:87089522 (GRCh37)
Canonical SPDI:: NC_000002.12:86862398:G:C
Gene:: CD8B (Varview), ANAPC1P1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.86862399G>C, NC_000002.11:g.87089522G>C

Select item 149061720513.

rs1490617205 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 2:86833607 (GRCh38)
2:87060730 (GRCh37)
Canonical SPDI:: NC_000002.12:86833606:A:C,NC_000002.12:86833606:A:G
Gene:: CD8B (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.06931/196 (KOREAN)
HGVS:: NC_000002.12:g.86833607A>C, NC_000002.12:g.86833607A>G, NC_000002.11:g.87060730A>C, NC_000002.11:g.87060730A>G

Select item 149056380314.

rs1490563803 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:86818128 (GRCh38)
2:87045251 (GRCh37)
Canonical SPDI:: NC_000002.12:86818127:T:G
Gene:: CD8B (Varview), LOC105374846 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.86818128T>G, NC_000002.11:g.87045251T>G

Select item 149055452715.

rs1490554527 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 2:86843930 (GRCh38)
2:87071053 (GRCh37)
Canonical SPDI:: NC_000002.12:86843929:C:A,NC_000002.12:86843929:C:T
Gene:: CD8B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000002.12:g.86843930C>A, NC_000002.12:g.86843930C>T, NC_000002.11:g.87071053C>A, NC_000002.11:g.87071053C>T

Select item 149051124916.

rs1490511249 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:86826050 (GRCh38)
2:87053173 (GRCh37)
Canonical SPDI:: NC_000002.12:86826049:G:A
Gene:: CD8B (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.86826050G>A, NC_000002.11:g.87053173G>A, NM_001013677.1:c.344G>A

Select item 149048659717.

rs1490486597 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:86830031 (GRCh38)
2:87057154 (GRCh37)
Canonical SPDI:: NC_000002.12:86830030:C:T
Gene:: CD8B (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.86830031C>T, NC_000002.11:g.87057154C>T

Select item 149042284218.

rs1490422842 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:86862874 (GRCh38)
2:87089997 (GRCh37)
Canonical SPDI:: NC_000002.12:86862873:C:T
Gene:: CD8B (Varview), ANAPC1P1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.86862874C>T, NC_000002.11:g.87089997C>T

Select item 149034562719.

rs1490345627 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 2:86825704 (GRCh38)
2:87052827 (GRCh37)
Canonical SPDI:: NC_000002.12:86825703:AA:A
Gene:: CD8B (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.86825705del, NC_000002.11:g.87052828del, NM_001013677.1:c.-2del

Select item 149021096920.

rs1490210969 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:86863510 (GRCh38)
2:87090633 (GRCh37)
Canonical SPDI:: NC_000002.12:86863509:T:C
Gene:: CD8B (Varview), ANAPC1P1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000546/1 (Korea1K)
HGVS:: NC_000002.12:g.86863510T>C, NC_000002.11:g.87090633T>C

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