SNP Links for Gene (Select 93134) - SNP

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Select item 14913997631.

rs1491399763 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 19:9619862 (GRCh38)
19:9730539 (GRCh37)
Canonical SPDI:: NC_000019.10:9619862::C
Gene:: ZNF561 (Varview), ZNF561-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.000035/1 (TOMMO)
C=0.044191/283 (1000Genomes)
C=0.049731/5908 (GnomAD)
HGVS:: NC_000019.10:g.9619862_9619863insC, NC_000019.9:g.9730538_9730539insC

Select item 14911497112.

rs1491149711 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTAT,CTATAT,CTCTAT,CTCTCTAT [Show Flanks]
Chromosome:: 19:9622318 (GRCh38)
19:9732995 (GRCh37)
Canonical SPDI:: NC_000019.10:9622318:T:TCTAT,NC_000019.10:9622318:T:TCTATAT,NC_000019.10:9622318:T:TCTCTAT,NC_000019.10:9622318:T:TCTCTCTAT
Gene:: ZNF561 (Varview), ZNF561-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCTCTAT=0./0 (ALFA)
TCTA=0.00167/1 (NorthernSweden)
TCTA=0.00394/66 (TOMMO)
HGVS:: NC_000019.10:g.9622319_9622320insCTAT, NC_000019.10:g.9622319_9622320insCTATAT, NC_000019.10:g.9622319TC[2]TAT[1], NC_000019.10:g.9622319TC[3]TAT[1], NC_000019.9:g.9732995_9732996insCTAT, NC_000019.9:g.9732995_9732996insCTATAT, NC_000019.9:g.9732995TC[2]TAT[1], NC_000019.9:g.9732995TC[3]TAT[1]

Select item 14910950983.

rs1491095098 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 19:9619863 (GRCh38)
19:9730539 (GRCh37)
Canonical SPDI:: NC_000019.10:9619861:TTT:T
Gene:: ZNF561 (Varview), ZNF561-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.00017/2 (ALFA)
HGVS:: NC_000019.10:g.9619863_9619864del, NC_000019.9:g.9730539_9730540del

Select item 14910835664.

rs1491083566 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 19:9619929 (GRCh38)
19:9730606 (GRCh37)
Canonical SPDI:: NC_000019.10:9619929:C:CC
Gene:: ZNF561 (Varview), ZNF561-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
HGVS:: NC_000019.10:g.9619930dup, NC_000019.9:g.9730606dup

Select item 14910759465.

rs1491075946 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->AC
Chromosome:: no mapping
Canonical SPDI:

Select item 14909091496.

rs1490909149 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 19:9612758 (GRCh38)
19:9723435 (GRCh37)
Canonical SPDI:: NC_000019.10:9612758:T:TT
Gene:: ZNF561 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.9612759dup, NC_000019.9:g.9723435dup

Select item 14907408827.

rs1490740882 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:9622807 (GRCh38)
19:9733483 (GRCh37)
Canonical SPDI:: NC_000019.10:9622806:A:G
Gene:: ZNF561 (Varview), ZNF561-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.9622807A>G, NC_000019.9:g.9733483A>G

Select item 14906378058.

rs1490637805 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:9621064 (GRCh38)
19:9731740 (GRCh37)
Canonical SPDI:: NC_000019.10:9621063:G:T
Gene:: ZNF561 (Varview), ZNF561-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_upstream_transcript_variant,5_prime_UTR_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000019.10:g.9621064G>T, NC_000019.9:g.9731740G>T, XM_047439709.1:c.-275C>A, XM_047439708.1:c.-244C>A

Select item 14904576849.

rs1490457684 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:9621576 (GRCh38)
19:9732252 (GRCh37)
Canonical SPDI:: NC_000019.10:9621575:C:T
Gene:: ZNF561 (Varview), ZNF561-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.9621576C>T, NC_000019.9:g.9732252C>T, NR_122038.1:n.95C>T, NM_001242812.1:c.24C>T

Select item 149044549210.

rs1490445492 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:9614885 (GRCh38)
19:9725561 (GRCh37)
Canonical SPDI:: NC_000019.10:9614884:C:A
Gene:: ZNF561 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.9614885C>A, NC_000019.9:g.9725561C>A

Select item 149031355711.

rs1490313557 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 19:9620313 (GRCh38)
19:9730989 (GRCh37)
Canonical SPDI:: NC_000019.10:9620312:C:A,NC_000019.10:9620312:C:T
Gene:: ZNF561 (Varview), ZNF561-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000019.10:g.9620313C>A, NC_000019.10:g.9620313C>T, NC_000019.9:g.9730989C>A, NC_000019.9:g.9730989C>T

Select item 149026162812.

rs1490261628 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 19:9619846 (GRCh38)
19:9730522 (GRCh37)
Canonical SPDI:: NC_000019.10:9619845:T:A,NC_000019.10:9619845:T:C
Gene:: ZNF561 (Varview), ZNF561-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
A=0.000312/2 (1000Genomes)
HGVS:: NC_000019.10:g.9619846T>A, NC_000019.10:g.9619846T>C, NC_000019.9:g.9730522T>A, NC_000019.9:g.9730522T>C

Select item 149013330913.

rs1490133309 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:9617184 (GRCh38)
19:9727860 (GRCh37)
Canonical SPDI:: NC_000019.10:9617183:A:G
Gene:: ZNF561 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000019.10:g.9617184A>G, NC_000019.9:g.9727860A>G, XM_017027479.3:c.-106T>C, XM_017027479.2:c.-106T>C, XM_017027479.1:c.-106T>C, XM_024451781.2:c.-106T>C, XM_024451781.1:c.-106T>C

Select item 149011903114.

rs1490119031 [Homo sapiens]

Variant type:: DEL
Alleles:: ATT>- [Show Flanks]
Chromosome:: 19:9613967 (GRCh38)
19:9724643 (GRCh37)
Canonical SPDI:: NC_000019.10:9613966:ATT:
Gene:: ZNF561 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.9613967_9613969del, NC_000019.9:g.9724643_9724645del

Select item 148982274915.

rs1489822749 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 19:9620728 (GRCh38)
19:9731404 (GRCh37)
Canonical SPDI:: NC_000019.10:9620727:A:C,NC_000019.10:9620727:A:G
Gene:: ZNF561 (Varview), ZNF561-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.00025/4 (TOMMO)
HGVS:: NC_000019.10:g.9620728A>C, NC_000019.10:g.9620728A>G, NC_000019.9:g.9731404A>C, NC_000019.9:g.9731404A>G

Select item 148978254316.

rs1489782543 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAGA>-,GAGAGA [Show Flanks]
Chromosome:: 19:9608314 (GRCh38)
19:9718990 (GRCh37)
Canonical SPDI:: NC_000019.10:9608307:GAGAGAGAGA:GAGAGA,NC_000019.10:9608307:GAGAGAGAGA:GAGAGAGAGAGA
Gene:: ZNF561 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GAGAGA=0./0 (ALFA)
-=0.000019/5 (TOPMED)
-=0.000021/3 (GnomAD)
-=0.000546/1 (Korea1K)
HGVS:: NC_000019.10:g.9608308GA[3], NC_000019.10:g.9608308GA[6], NC_000019.9:g.9718984GA[3], NC_000019.9:g.9718984GA[6], XM_006722938.4:c.*1883TC[3], XM_006722938.4:c.*1883TC[6], XM_006722938.3:c.*1883TC[3], XM_006722938.3:c.*1883TC[6], XM_006722938.2:c.*1883TC[3], XM_006722938.2:c.*1883TC[6], XM_005260150.3:c.*1883TC[3], XM_005260150.3:c.*1883TC[6], XM_005260150.2:c.*1883TC[3], XM_005260150.2:c.*1883TC[6], XM_011528434.3:c.*1883TC[3], XM_011528434.3:c.*1883TC[6], XM_011528434.2:c.*1883TC[3], XM_011528434.2:c.*1883TC[6], NM_152289.3:c.*1883TC[3], NM_152289.3:c.*1883TC[6], NM_152289.2:c.*1883TC[3], NM_152289.2:c.*1883TC[6], XM_017027479.3:c.*1883TC[3], XM_017027479.3:c.*1883TC[6], XM_017027479.2:c.*1883TC[3], XM_017027479.2:c.*1883TC[6], XM_017027479.1:c.*1883TC[3], XM_017027479.1:c.*1883TC[6], XM_024451781.2:c.*1883TC[3], XM_024451781.2:c.*1883TC[6], XM_024451781.1:c.*1883TC[3], XM_024451781.1:c.*1883TC[6], NM_001330365.2:c.*1883TC[3], NM_001330365.2:c.*1883TC[6], NM_001330365.1:c.*1883TC[3], NM_001330365.1:c.*1883TC[6], XM_047439709.1:c.*1883TC[3], XM_047439709.1:c.*1883TC[6], XM_047439708.1:c.*1883TC[3], XM_047439708.1:c.*1883TC[6], XM_047439711.1:c.*1883TC[3], XM_047439711.1:c.*1883TC[6], XM_047439710.1:c.*1883TC[3], XM_047439710.1:c.*1883TC[6], XM_047439712.1:c.*1883TC[3], XM_047439712.1:c.*1883TC[6]

Select item 148972024817.

rs1489720248 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:9612467 (GRCh38)
19:9723143 (GRCh37)
Canonical SPDI:: NC_000019.10:9612466:C:T
Gene:: ZNF561 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.9612467C>T, NC_000019.9:g.9723143C>T

Select item 148959070118.

rs1489590701 [Homo sapiens]

Variant type:: DELINS
Alleles:: TATA>- [Show Flanks]
Chromosome:: 19:9622363 (GRCh38)
19:9733039 (GRCh37)
Canonical SPDI:: NC_000019.10:9622359:ATATATA:ATA
Gene:: ZNF561 (Varview), ZNF561-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: ATA=0./0 (ALFA)
HGVS:: NC_000019.10:g.9622361TA[1], NC_000019.9:g.9733037TA[1]

Select item 148958061119.

rs1489580611 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 19:9610953 (GRCh38)
19:9721629 (GRCh37)
Canonical SPDI:: NC_000019.10:9610952:A:C
Gene:: ZNF561 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000019.10:g.9610953A>C, NC_000019.9:g.9721629A>C, XM_006722938.4:c.726T>G, XM_006722938.3:c.726T>G, XM_006722938.2:c.726T>G, XM_006722938.1:c.726T>G, XM_005260150.3:c.708T>G, XM_005260150.2:c.708T>G, XM_005260150.1:c.708T>G, XM_011528434.3:c.726T>G, XM_011528434.2:c.726T>G, XM_011528434.1:c.726T>G, NM_152289.3:c.708T>G, NM_152289.2:c.708T>G, XM_017027479.3:c.501T>G, XM_017027479.2:c.501T>G, XM_017027479.1:c.501T>G, XM_024451781.2:c.501T>G, XM_024451781.1:c.501T>G, NM_001330365.2:c.501T>G, NM_001330365.1:c.501T>G, XM_047439709.1:c.708T>G, XM_047439708.1:c.726T>G, XM_047439711.1:c.627T>G, XM_047439710.1:c.627T>G, XM_047439712.1:c.387T>G

Select item 148956744620.

rs1489567446 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:9622206 (GRCh38)
19:9732882 (GRCh37)
Canonical SPDI:: NC_000019.10:9622205:G:A
Gene:: ZNF561 (Varview), ZNF561-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.9622206G>A, NC_000019.9:g.9732882G>A