SNP Links for Gene (Select 9404) - SNP

Links from Gene

Items: 1 to 20 of 1000

<< First< Prev

Page of 50

Next >Last >>

Select item 14915363071.

rs1491536307 has merged into rs35866007 [Homo sapiens]

Variant type:: DELINS
Alleles:: GCGCGCGCGCGC>-,GCGC,GCGCGC,GCGCGCGC,GCGCGCGCGC,GCGCGCGCGCGCGC,GCGCGCGCGCGCGCGC,GCGCGCGCGCGCGCGCGC,GCGCGCGCGCGCGCGCGCGC [Show Flanks]
Chromosome:: 11:58579070 (GRCh38)
11:58346543 (GRCh37)
Canonical SPDI:: NC_000011.10:58579065:GCGCGCGCGCGCGCGC:GCGC,NC_000011.10:58579065:GCGCGCGCGCGCGCGC:GCGCGCGC,NC_000011.10:58579065:GCGCGCGCGCGCGCGC:GCGCGCGCGC,NC_000011.10:58579065:GCGCGCGCGCGCGCGC:GCGCGCGCGCGC,NC_000011.10:58579065:GCGCGCGCGCGCGCGC:GCGCGCGCGCGCGC,NC_000011.10:58579065:GCGCGCGCGCGCGCGC:GCGCGCGCGCGCGCGCGC,NC_000011.10:58579065:GCGCGCGCGCGCGCGC:GCGCGCGCGCGCGCGCGCGC,NC_000011.10:58579065:GCGCGCGCGCGCGCGC:GCGCGCGCGCGCGCGCGCGCGC,NC_000011.10:58579065:GCGCGCGCGCGCGCGC:GCGCGCGCGCGCGCGCGCGCGCGC
Gene:: LPXN (Varview), ZFP91 (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: 5_prime_UTR_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCGC=0./0 (ALFA)
GC=0.21945/1099 (1000Genomes)
GC=0.3/12 (GENOME_DK)
HGVS:: NC_000011.10:g.58579066GC[2], NC_000011.10:g.58579066GC[4], NC_000011.10:g.58579066GC[5], NC_000011.10:g.58579066GC[6], NC_000011.10:g.58579066GC[7], NC_000011.10:g.58579066GC[9], NC_000011.10:g.58579066GC[10], NC_000011.10:g.58579066GC[11], NC_000011.10:g.58579066GC[12], NC_000011.9:g.58346539GC[2], NC_000011.9:g.58346539GC[4], NC_000011.9:g.58346539GC[5], NC_000011.9:g.58346539GC[6], NC_000011.9:g.58346539GC[7], NC_000011.9:g.58346539GC[9], NC_000011.9:g.58346539GC[10], NC_000011.9:g.58346539GC[11], NC_000011.9:g.58346539GC[12], NM_053023.5:c.-216GC[2], NM_053023.5:c.-216GC[4], NM_053023.5:c.-216GC[5], NM_053023.5:c.-216GC[6], NM_053023.5:c.-216GC[7], NM_053023.5:c.-216GC[9], NM_053023.5:c.-216GC[10], NM_053023.5:c.-216GC[11], NM_053023.5:c.-216GC[12], NM_001197051.2:c.-216GC[2], NM_001197051.2:c.-216GC[4], NM_001197051.2:c.-216GC[5], NM_001197051.2:c.-216GC[6], NM_001197051.2:c.-216GC[7], NM_001197051.2:c.-216GC[9], NM_001197051.2:c.-216GC[10], NM_001197051.2:c.-216GC[11], NM_001197051.2:c.-216GC[12]

Select item 14915053302.

rs1491505330 [Homo sapiens]

Variant type:: DELINS
Alleles:: GC>- [Show Flanks]
Chromosome:: 11:58555792 (GRCh38)
11:58323265 (GRCh37)
Canonical SPDI:: NC_000011.10:58555790:CGC:C
Gene:: LPXN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000015/2 (GnomAD)
-=0.000142/2 (TOMMO)
-=0.092772/344 (TWINSUK)
-=0.096004/370 (ALSPAC)
HGVS:: NC_000011.10:g.58555792_58555793del, NC_000011.9:g.58323265_58323266del

Select item 14913918243.

rs1491391824 has merged into rs59534059 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAA>-,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 11:58573255 (GRCh38)
11:58340728 (GRCh37)
Canonical SPDI:: NC_000011.10:58573246:AAAAAAAAAAAAAAA:AAAAAAAA,NC_000011.10:58573246:AAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000011.10:58573246:AAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000011.10:58573246:AAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000011.10:58573246:AAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000011.10:58573246:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000011.10:58573246:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000011.10:58573246:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000011.10:58573246:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000011.10:58573246:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000011.10:58573246:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000011.10:58573246:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000011.10:58573246:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LPXN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAA=0./0 (ALFA)
-=0.1816/700 (ALSPAC)
-=0.1839/682 (TWINSUK)
-=0.225/9 (GENOME_DK)
HGVS:: NC_000011.10:g.58573255_58573261del, NC_000011.10:g.58573257_58573261del, NC_000011.10:g.58573258_58573261del, NC_000011.10:g.58573259_58573261del, NC_000011.10:g.58573260_58573261del, NC_000011.10:g.58573261del, NC_000011.10:g.58573261dup, NC_000011.10:g.58573260_58573261dup, NC_000011.10:g.58573259_58573261dup, NC_000011.10:g.58573258_58573261dup, NC_000011.10:g.58573257_58573261dup, NC_000011.10:g.58573256_58573261dup, NC_000011.10:g.58573252_58573261dup, NC_000011.9:g.58340728_58340734del, NC_000011.9:g.58340730_58340734del, NC_000011.9:g.58340731_58340734del, NC_000011.9:g.58340732_58340734del, NC_000011.9:g.58340733_58340734del, NC_000011.9:g.58340734del, NC_000011.9:g.58340734dup, NC_000011.9:g.58340733_58340734dup, NC_000011.9:g.58340732_58340734dup, NC_000011.9:g.58340731_58340734dup, NC_000011.9:g.58340730_58340734dup, NC_000011.9:g.58340729_58340734dup, NC_000011.9:g.58340725_58340734dup

Select item 14913292714.

rs1491329271 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CCGC,CGC [Show Flanks]
Chromosome:: 11:58579066 (GRCh38)
11:58346540 (GRCh37)
Canonical SPDI:: NC_000011.10:58579066:CGC:CGCCCGC,NC_000011.10:58579066:CGC:CGCCGC
Gene:: LPXN (Varview), ZFP91 (Varview), ZFP91-CNTF (Varview)
Functional Consequence:: 5_prime_UTR_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CGCCCGC=0./0 (ALFA)
CGCC=0.00003/2 (GnomAD)
HGVS:: NC_000011.10:g.58579069_58579070insCCGC, NC_000011.10:g.58579067_58579069dup, NC_000011.9:g.58346542_58346543insCCGC, NC_000011.9:g.58346540_58346542dup, NM_053023.5:c.-213_-212insCCGC, NM_053023.5:c.-215_-213dup, NM_001197051.2:c.-213_-212insCCGC, NM_001197051.2:c.-215_-213dup

Select item 14912373985.

rs1491237398 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 11:58573246 (GRCh38)
11:58340719 (GRCh37)
Canonical SPDI:: NC_000011.10:58573245:CA:
Gene:: LPXN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.00025/3 (ALFA)
-=0.0011/2 (Korea1K)
HGVS:: NC_000011.10:g.58573246_58573247del, NC_000011.9:g.58340719_58340720del

Select item 14910564306.

rs1491056430 has merged into rs35629114 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAA>-,A,AAA,AAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 11:58553347 (GRCh38)
11:58320820 (GRCh37)
Canonical SPDI:: NC_000011.10:58553335:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000011.10:58553335:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000011.10:58553335:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000011.10:58553335:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000011.10:58553335:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000011.10:58553335:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000011.10:58553335:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000011.10:58553335:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:58553335:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:58553335:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:58553335:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:58553335:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LPXN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.58553347_58553356del, NC_000011.10:g.58553348_58553356del, NC_000011.10:g.58553350_58553356del, NC_000011.10:g.58553352_58553356del, NC_000011.10:g.58553354_58553356del, NC_000011.10:g.58553355_58553356del, NC_000011.10:g.58553356del, NC_000011.10:g.58553356dup, NC_000011.10:g.58553355_58553356dup, NC_000011.10:g.58553354_58553356dup, NC_000011.10:g.58553353_58553356dup, NC_000011.10:g.58553352_58553356dup, NC_000011.9:g.58320820_58320829del, NC_000011.9:g.58320821_58320829del, NC_000011.9:g.58320823_58320829del, NC_000011.9:g.58320825_58320829del, NC_000011.9:g.58320827_58320829del, NC_000011.9:g.58320828_58320829del, NC_000011.9:g.58320829del, NC_000011.9:g.58320829dup, NC_000011.9:g.58320828_58320829dup, NC_000011.9:g.58320827_58320829dup, NC_000011.9:g.58320826_58320829dup, NC_000011.9:g.58320825_58320829dup

Select item 14909542697.

rs1490954269 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:58542764 (GRCh38)
11:58310237 (GRCh37)
Canonical SPDI:: NC_000011.10:58542763:C:T
Gene:: LPXN (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.58542764C>T, NC_000011.9:g.58310237C>T

Select item 14909094898.

rs1490909489 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:58575515 (GRCh38)
11:58342988 (GRCh37)
Canonical SPDI:: NC_000011.10:58575514:A:C
Gene:: LPXN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
C=0.00003/8 (TOPMED)
HGVS:: NC_000011.10:g.58575515A>C, NC_000011.9:g.58342988A>C

Select item 14908081679.

rs1490808167 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:58567555 (GRCh38)
11:58335028 (GRCh37)
Canonical SPDI:: NC_000011.10:58567554:A:G
Gene:: LPXN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000011.10:g.58567555A>G, NC_000011.9:g.58335028A>G

Select item 149071529110.

rs1490715291 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:58541881 (GRCh38)
11:58309354 (GRCh37)
Canonical SPDI:: NC_000011.10:58541880:T:C
Gene:: LPXN (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.58541881T>C, NC_000011.9:g.58309354T>C

Select item 149061675611.

rs1490616756 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 11:58549586 (GRCh38)
11:58317059 (GRCh37)
Canonical SPDI:: NC_000011.10:58549585:A:C,NC_000011.10:58549585:A:T
Gene:: LPXN (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.58549586A>C, NC_000011.10:g.58549586A>T, NC_000011.9:g.58317059A>C, NC_000011.9:g.58317059A>T

Select item 149058543512.

rs1490585435 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:58550572 (GRCh38)
11:58318045 (GRCh37)
Canonical SPDI:: NC_000011.10:58550571:G:A
Gene:: LPXN (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.58550572G>A, NC_000011.9:g.58318045G>A, XM_047427884.1:c.*225C>T, XM_047427885.1:c.*225C>T

Select item 149052764313.

rs1490527643 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:58566285 (GRCh38)
11:58333758 (GRCh37)
Canonical SPDI:: NC_000011.10:58566284:T:C
Gene:: LPXN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.58566285T>C, NC_000011.9:g.58333758T>C

Select item 149041987514.

rs1490419875 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 11:58575001 (GRCh38)
11:58342474 (GRCh37)
Canonical SPDI:: NC_000011.10:58575000:A:T
Gene:: LPXN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.58575001A>T, NC_000011.9:g.58342474A>T

Select item 149022570015.

rs1490225700 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:58541415 (GRCh38)
11:58308888 (GRCh37)
Canonical SPDI:: NC_000011.10:58541414:T:C
Gene:: LPXN (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.58541415T>C, NC_000011.9:g.58308888T>C

Select item 149019984016.

rs1490199840 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:58540399 (GRCh38)
11:58307872 (GRCh37)
Canonical SPDI:: NC_000011.10:58540398:T:C
Gene:: LPXN (Varview)
Functional Consequence:: genic_downstream_transcript_variant,splice_acceptor_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.58540399T>C, NC_000011.9:g.58307872T>C

Select item 149018649117.

rs1490186491 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:58533409 (GRCh38)
11:58300882 (GRCh37)
Canonical SPDI:: NC_000011.10:58533408:T:C
Gene:: LPXN (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.58533409T>C, NC_000011.9:g.58300882T>C

Select item 149003408718.

rs1490034087 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:58565773 (GRCh38)
11:58333246 (GRCh37)
Canonical SPDI:: NC_000011.10:58565772:A:G
Gene:: LPXN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.58565773A>G, NC_000011.9:g.58333246A>G

Select item 148997415919.

rs1489974159 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:58545437 (GRCh38)
11:58312910 (GRCh37)
Canonical SPDI:: NC_000011.10:58545436:A:C
Gene:: LPXN (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.58545437A>C, NC_000011.9:g.58312910A>C

Select item 148994213520.

rs1489942135 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:58558450 (GRCh38)
11:58325923 (GRCh37)
Canonical SPDI:: NC_000011.10:58558449:T:A
Gene:: LPXN (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000011.10:g.58558450T>A, NC_000011.9:g.58325923T>A

<< First< Prev

Page of 50

Next >Last >>

dbSNP

Result Filters

Validation Status

Function Class

Variation Class

Annotation

Global MAF

Custom range

Additional filters

Display Settings:

Send to:

Links from Gene

Items: 1 to 20 of 1000

Display Settings:

Send to:

Supplemental Content

Find related data

Recent activity