SNP Links for Gene (Select 9960) - SNP

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Select item 14915750511.

rs1491575051 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TTTTTTTTTTTTTTTTTA [Show Flanks]
Chromosome:: 15:63511264 (GRCh38)
15:63803464 (GRCh37)
Canonical SPDI:: NC_000015.10:63511264:TTA:TTATTTTTTTTTTTTTTTTTA
Gene:: USP3 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
HGVS:: NC_000015.10:g.63511267_63511268insTTTTTTTTTTTTTTTTTA, NC_000015.9:g.63803466_63803467insTTTTTTTTTTTTTTTTTA

Select item 14915266572.

rs1491526657 [Homo sapiens]

Variant type:: INS
Alleles:: ->TT [Show Flanks]
Chromosome:: 15:63512304 (GRCh38)
15:63804504 (GRCh37)
Canonical SPDI:: NC_000015.10:63512304::TT
Gene:: USP3 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: TT=0.00014/19 (GnomAD)
HGVS:: NC_000015.10:g.63512304_63512305insTT, NC_000015.9:g.63804503_63804504insTT, XM_017022765.2:c.-15965_-15964insTT, XM_017022763.2:c.-14926_-14925insTT, XM_017022764.2:c.-14862_-14861insTT, XM_047433393.1:c.-16029_-16028insTT

Select item 14914558863.

rs1491455886 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 15:63536455 (GRCh38)
15:63828655 (GRCh37)
Canonical SPDI:: NC_000015.10:63536455::G
Gene:: USP3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000033/1 (GnomAD)
HGVS:: NC_000015.10:g.63536455_63536456insG, NC_000015.9:g.63828654_63828655insG

Select item 14914166274.

rs1491416627 [Homo sapiens]

Variant type:: DEL
Alleles:: CC>- [Show Flanks]
Chromosome:: 15:63512304 (GRCh38)
15:63804503 (GRCh37)
Canonical SPDI:: NC_000015.10:63512303:CC:
Gene:: USP3 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: -=0.000022/3 (GnomAD)
HGVS:: NC_000015.10:g.63512304_63512305del, NC_000015.9:g.63804503_63804504del, XM_017022765.2:c.-15965_-15964del, XM_017022763.2:c.-14926_-14925del, XM_017022764.2:c.-14862_-14861del, XM_047433393.1:c.-16029_-16028del

Select item 14914038705.

rs1491403870 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 15:63511287 (GRCh38)
15:63803486 (GRCh37)
Canonical SPDI:: NC_000015.10:63511285:TCT:T
Gene:: USP3 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.00007/2 (TOMMO)
-=0.00009/1 (GnomAD)
HGVS:: NC_000015.10:g.63511287_63511288del, NC_000015.9:g.63803486_63803487del

Select item 14913770766.

rs1491377076 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 15:63590062 (GRCh38)
15:63882261 (GRCh37)
Canonical SPDI:: NC_000015.10:63590060:TTT:T
Gene:: USP3 (Varview), USP3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
-=0.000034/9 (TOPMED)
HGVS:: NC_000015.10:g.63590062_63590063del, NC_000015.9:g.63882261_63882262del

Select item 14913769017.

rs1491376901 has merged into rs34923651 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTT>-,T,TTT,TTTT,TTTTT,TTTTTTT,TTTTTTTT [Show Flanks]
Chromosome:: 15:63592767 (GRCh38)
15:63884966 (GRCh37)
Canonical SPDI:: NC_000015.10:63592759:TTTTTTTTTTTTT:TTTTTTT,NC_000015.10:63592759:TTTTTTTTTTTTT:TTTTTTTT,NC_000015.10:63592759:TTTTTTTTTTTTT:TTTTTTTTTT,NC_000015.10:63592759:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000015.10:63592759:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000015.10:63592759:TTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000015.10:63592759:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT
Gene:: USP3 (Varview), USP3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTT=0./0 (ALFA)
-=0.247/1237 (1000Genomes)
-=0.275/11 (GENOME_DK)
-=0.30333/182 (NorthernSweden)
-=0.36435/1351 (TWINSUK)
-=0.37494/1445 (ALSPAC)
HGVS:: NC_000015.10:g.63592767_63592772del, NC_000015.10:g.63592768_63592772del, NC_000015.10:g.63592770_63592772del, NC_000015.10:g.63592771_63592772del, NC_000015.10:g.63592772del, NC_000015.10:g.63592772dup, NC_000015.10:g.63592771_63592772dup, NC_000015.9:g.63884966_63884971del, NC_000015.9:g.63884967_63884971del, NC_000015.9:g.63884969_63884971del, NC_000015.9:g.63884970_63884971del, NC_000015.9:g.63884971del, NC_000015.9:g.63884971dup, NC_000015.9:g.63884970_63884971dup, NG_027784.1:g.415_420del, NG_027784.1:g.416_420del, NG_027784.1:g.418_420del, NG_027784.1:g.419_420del, NG_027784.1:g.420del, NG_027784.1:g.420dup, NG_027784.1:g.419_420dup, NM_006537.4:c.*1941_*1946del, NM_006537.4:c.*1942_*1946del, NM_006537.4:c.*1944_*1946del, NM_006537.4:c.*1945_*1946del, NM_006537.4:c.*1946del, NM_006537.4:c.*1946dup, NM_006537.4:c.*1945_*1946dup, NM_006537.3:c.*1941_*1946del, NM_006537.3:c.*1942_*1946del, NM_006537.3:c.*1944_*1946del, NM_006537.3:c.*1945_*1946del, NM_006537.3:c.*1946del, NM_006537.3:c.*1946dup, NM_006537.3:c.*1945_*1946dup, XM_017022765.2:c.*1941_*1946del, XM_017022765.2:c.*1942_*1946del, XM_017022765.2:c.*1944_*1946del, XM_017022765.2:c.*1945_*1946del, XM_017022765.2:c.*1946del, XM_017022765.2:c.*1946dup, XM_017022765.2:c.*1945_*1946dup, XM_017022765.1:c.*1941_*1946del, XM_017022765.1:c.*1942_*1946del, XM_017022765.1:c.*1944_*1946del, XM_017022765.1:c.*1945_*1946del, XM_017022765.1:c.*1946del, XM_017022765.1:c.*1946dup, XM_017022765.1:c.*1945_*1946dup, XM_017022763.2:c.*1941_*1946del, XM_017022763.2:c.*1942_*1946del, XM_017022763.2:c.*1944_*1946del, XM_017022763.2:c.*1945_*1946del, XM_017022763.2:c.*1946del, XM_017022763.2:c.*1946dup, XM_017022763.2:c.*1945_*1946dup, XM_017022763.1:c.*1941_*1946del, XM_017022763.1:c.*1942_*1946del, XM_017022763.1:c.*1944_*1946del, XM_017022763.1:c.*1945_*1946del, XM_017022763.1:c.*1946del, XM_017022763.1:c.*1946dup, XM_017022763.1:c.*1945_*1946dup, XM_017022764.2:c.*1941_*1946del, XM_017022764.2:c.*1942_*1946del, XM_017022764.2:c.*1944_*1946del, XM_017022764.2:c.*1945_*1946del, XM_017022764.2:c.*1946del, XM_017022764.2:c.*1946dup, XM_017022764.2:c.*1945_*1946dup, XM_017022764.1:c.*1941_*1946del, XM_017022764.1:c.*1942_*1946del, XM_017022764.1:c.*1944_*1946del, XM_017022764.1:c.*1945_*1946del, XM_017022764.1:c.*1946del, XM_017022764.1:c.*1946dup, XM_017022764.1:c.*1945_*1946dup, NR_046341.2:n.3804_3809del, NR_046341.2:n.3805_3809del, NR_046341.2:n.3807_3809del, NR_046341.2:n.3808_3809del, NR_046341.2:n.3809del, NR_046341.2:n.3809dup, NR_046341.2:n.3808_3809dup, NR_046341.1:n.3886_3891del, NR_046341.1:n.3887_3891del, NR_046341.1:n.3889_3891del, NR_046341.1:n.3890_3891del, NR_046341.1:n.3891del, NR_046341.1:n.3891dup, NR_046341.1:n.3890_3891dup, NR_046342.2:n.3767_3772del, NR_046342.2:n.3768_3772del, NR_046342.2:n.3770_3772del, NR_046342.2:n.3771_3772del, NR_046342.2:n.3772del, NR_046342.2:n.3772dup, NR_046342.2:n.3771_3772dup, NR_046342.1:n.3849_3854del, NR_046342.1:n.3850_3854del, NR_046342.1:n.3852_3854del, NR_046342.1:n.3853_3854del, NR_046342.1:n.3854del, NR_046342.1:n.3854dup, NR_046342.1:n.3853_3854dup, NM_001256702.2:c.*1941_*1946del, NM_001256702.2:c.*1942_*1946del, NM_001256702.2:c.*1944_*1946del, NM_001256702.2:c.*1945_*1946del, NM_001256702.2:c.*1946del, NM_001256702.2:c.*1946dup, NM_001256702.2:c.*1945_*1946dup, NM_001256702.1:c.*1941_*1946del, NM_001256702.1:c.*1942_*1946del, NM_001256702.1:c.*1944_*1946del, NM_001256702.1:c.*1945_*1946del, NM_001256702.1:c.*1946del, NM_001256702.1:c.*1946dup, NM_001256702.1:c.*1945_*1946dup, XM_047433393.1:c.*1941_*1946del, XM_047433393.1:c.*1942_*1946del, XM_047433393.1:c.*1944_*1946del, XM_047433393.1:c.*1945_*1946del, XM_047433393.1:c.*1946del, XM_047433393.1:c.*1946dup, XM_047433393.1:c.*1945_*1946dup, XM_047433395.1:c.*1941_*1946del, XM_047433395.1:c.*1942_*1946del, XM_047433395.1:c.*1944_*1946del, XM_047433395.1:c.*1945_*1946del, XM_047433395.1:c.*1946del, XM_047433395.1:c.*1946dup, XM_047433395.1:c.*1945_*1946dup, XM_047433394.1:c.*1941_*1946del, XM_047433394.1:c.*1942_*1946del, XM_047433394.1:c.*1944_*1946del, XM_047433394.1:c.*1945_*1946del, XM_047433394.1:c.*1946del, XM_047433394.1:c.*1946dup, XM_047433394.1:c.*1945_*1946dup

Select item 14913702478.

rs1491370247 has merged into rs60885501 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA [Show Flanks]
Chromosome:: 15:63577938 (GRCh38)
15:63870137 (GRCh37)
Canonical SPDI:: NC_000015.10:63577928:AAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000015.10:63577928:AAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000015.10:63577928:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000015.10:63577928:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:63577928:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000015.10:63577928:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000015.10:63577928:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:63577928:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000015.10:63577928:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000015.10:63577928:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000015.10:63577928:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA
Gene:: USP3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
-=0.2782/1393 (1000Genomes)
HGVS:: NC_000015.10:g.63577938_63577946del, NC_000015.10:g.63577939_63577946del, NC_000015.10:g.63577940_63577946del, NC_000015.10:g.63577941_63577946del, NC_000015.10:g.63577942_63577946del, NC_000015.10:g.63577943_63577946del, NC_000015.10:g.63577944_63577946del, NC_000015.10:g.63577945_63577946del, NC_000015.10:g.63577946del, NC_000015.10:g.63577946dup, NC_000015.10:g.63577945_63577946dup, NC_000015.9:g.63870137_63870145del, NC_000015.9:g.63870138_63870145del, NC_000015.9:g.63870139_63870145del, NC_000015.9:g.63870140_63870145del, NC_000015.9:g.63870141_63870145del, NC_000015.9:g.63870142_63870145del, NC_000015.9:g.63870143_63870145del, NC_000015.9:g.63870144_63870145del, NC_000015.9:g.63870145del, NC_000015.9:g.63870145dup, NC_000015.9:g.63870144_63870145dup

Select item 14913491089.

rs1491349108 [Homo sapiens]

Variant type:: INS
Alleles:: ->AGAC [Show Flanks]
Chromosome:: 15:63547744 (GRCh38)
15:63839944 (GRCh37)
Canonical SPDI:: NC_000015.10:63547744::AGAC
Gene:: USP3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AGAC=0./0 (ALFA)
AGAC=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.63547744_63547745insAGAC, NC_000015.9:g.63839943_63839944insAGAC

Select item 149133390010.

rs1491333900 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:63577928 (GRCh38)
15:63870127 (GRCh37)
Canonical SPDI:: NC_000015.10:63577927:CA:
Gene:: USP3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00202/24 (ALFA)
HGVS:: NC_000015.10:g.63577928_63577929del, NC_000015.9:g.63870127_63870128del

Select item 149129580611.

rs1491295806 has merged into rs11406191 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAA>-,A,AA,AAA,AAAAA,AAAAAA,AAAAAAA [Show Flanks]
Chromosome:: 15:63536464 (GRCh38)
15:63828663 (GRCh37)
Canonical SPDI:: NC_000015.10:63536454:AAAAAAAAAAAAA:AAAAAAAAA,NC_000015.10:63536454:AAAAAAAAAAAAA:AAAAAAAAAA,NC_000015.10:63536454:AAAAAAAAAAAAA:AAAAAAAAAAA,NC_000015.10:63536454:AAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:63536454:AAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000015.10:63536454:AAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:63536454:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAA
Gene:: USP3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
A=0.3307/1656 (1000Genomes)
HGVS:: NC_000015.10:g.63536464_63536467del, NC_000015.10:g.63536465_63536467del, NC_000015.10:g.63536466_63536467del, NC_000015.10:g.63536467del, NC_000015.10:g.63536467dup, NC_000015.10:g.63536466_63536467dup, NC_000015.10:g.63536465_63536467dup, NC_000015.9:g.63828663_63828666del, NC_000015.9:g.63828664_63828666del, NC_000015.9:g.63828665_63828666del, NC_000015.9:g.63828666del, NC_000015.9:g.63828666dup, NC_000015.9:g.63828665_63828666dup, NC_000015.9:g.63828664_63828666dup

Select item 149129323112.

rs1491293231 has merged into rs11321018 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTT>-,T,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 15:63575170 (GRCh38)
15:63867369 (GRCh37)
Canonical SPDI:: NC_000015.10:63575158:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000015.10:63575158:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000015.10:63575158:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000015.10:63575158:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000015.10:63575158:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000015.10:63575158:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000015.10:63575158:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000015.10:63575158:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000015.10:63575158:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:63575158:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:63575158:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:63575158:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:63575158:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:63575158:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:63575158:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: USP3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000015.10:g.63575170_63575179del, NC_000015.10:g.63575171_63575179del, NC_000015.10:g.63575174_63575179del, NC_000015.10:g.63575175_63575179del, NC_000015.10:g.63575176_63575179del, NC_000015.10:g.63575177_63575179del, NC_000015.10:g.63575178_63575179del, NC_000015.10:g.63575179del, NC_000015.10:g.63575179dup, NC_000015.10:g.63575178_63575179dup, NC_000015.10:g.63575177_63575179dup, NC_000015.10:g.63575176_63575179dup, NC_000015.10:g.63575175_63575179dup, NC_000015.10:g.63575172_63575179dup, NC_000015.10:g.63575171_63575179dup, NC_000015.9:g.63867369_63867378del, NC_000015.9:g.63867370_63867378del, NC_000015.9:g.63867373_63867378del, NC_000015.9:g.63867374_63867378del, NC_000015.9:g.63867375_63867378del, NC_000015.9:g.63867376_63867378del, NC_000015.9:g.63867377_63867378del, NC_000015.9:g.63867378del, NC_000015.9:g.63867378dup, NC_000015.9:g.63867377_63867378dup, NC_000015.9:g.63867376_63867378dup, NC_000015.9:g.63867375_63867378dup, NC_000015.9:g.63867374_63867378dup, NC_000015.9:g.63867371_63867378dup, NC_000015.9:g.63867370_63867378dup

Select item 149128410113.

rs1491284101 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTT [Show Flanks]
Chromosome:: 15:63590061 (GRCh38)
15:63882261 (GRCh37)
Canonical SPDI:: NC_000015.10:63590061:TTCTT:TTCTTCTT
Gene:: USP3 (Varview), USP3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTCTTCTT=0./0 (ALFA)
TTC=0.000004/1 (TOPMED)
TTC=0.000318/5 (TOMMO)
TTC=0.001092/2 (Korea1K)
HGVS:: NC_000015.10:g.63590064_63590066dup, NC_000015.9:g.63882263_63882265dup

Select item 149125800514.

rs1491258005 [Homo sapiens]

Variant type:: INS
Alleles:: ->AAAAAAAAAAAA,AAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 15:63511286 (GRCh38)
15:63803486 (GRCh37)
Canonical SPDI:: NC_000015.10:63511286::AAAAAAAAAAAA,NC_000015.10:63511286::AAAAAAAAAAAAAAAA
Gene:: USP3 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
HGVS:: NC_000015.10:g.63511286_63511287insAAAAAAAAAAAA, NC_000015.10:g.63511286_63511287insAAAAAAAAAAAAAAAA, NC_000015.9:g.63803485_63803486insAAAAAAAAAAAA, NC_000015.9:g.63803485_63803486insAAAAAAAAAAAAAAAA

Select item 149125747215.

rs1491257472 [Homo sapiens]

Variant type:: DELINS
Alleles:: GG>- [Show Flanks]
Chromosome:: 15:63547745 (GRCh38)
15:63839944 (GRCh37)
Canonical SPDI:: NC_000015.10:63547743:GGG:G
Gene:: USP3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.01416/168 (ALFA)
-=0.0003/5 (TOMMO)
-=0.02078/145 (GnomAD)
HGVS:: NC_000015.10:g.63547745_63547746del, NC_000015.9:g.63839944_63839945del

Select item 149123246416.

rs1491232464 has merged into rs61283920 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAA>-,A,AA,AAA,AAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 15:63511278 (GRCh38)
15:63803477 (GRCh37)
Canonical SPDI:: NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:63511266:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: USP3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAA=0./0 (ALFA)
-=0./0 (GENOME_DK)
AAAAAAAAAAAAA=0.3822/1914 (1000Genomes)
HGVS:: NC_000015.10:g.63511278_63511282del, NC_000015.10:g.63511279_63511282del, NC_000015.10:g.63511280_63511282del, NC_000015.10:g.63511281_63511282del, NC_000015.10:g.63511282del, NC_000015.10:g.63511282dup, NC_000015.10:g.63511281_63511282dup, NC_000015.10:g.63511280_63511282dup, NC_000015.10:g.63511279_63511282dup, NC_000015.10:g.63511278_63511282dup, NC_000015.10:g.63511277_63511282dup, NC_000015.10:g.63511276_63511282dup, NC_000015.10:g.63511275_63511282dup, NC_000015.10:g.63511274_63511282dup, NC_000015.10:g.63511273_63511282dup, NC_000015.10:g.63511272_63511282dup, NC_000015.10:g.63511271_63511282dup, NC_000015.10:g.63511270_63511282dup, NC_000015.10:g.63511269_63511282dup, NC_000015.10:g.63511268_63511282dup, NC_000015.10:g.63511267_63511282dup, NC_000015.10:g.63511282_63511283insAAAAAAAAAAAAAAAAA, NC_000015.10:g.63511282_63511283insAAAAAAAAAAAAAAAAAA, NC_000015.10:g.63511282_63511283insAAAAAAAAAAAAAAAAAAA, NC_000015.10:g.63511282_63511283insAAAAAAAAAAAAAAAAAAAA, NC_000015.10:g.63511282_63511283insAAAAAAAAAAAAAAAAAAAAA, NC_000015.10:g.63511282_63511283insAAAAAAAAAAAAAAAAAAAAAA, NC_000015.10:g.63511282_63511283insAAAAAAAAAAAAAAAAAAAAAAA, NC_000015.10:g.63511282_63511283insAAAAAAAAAAAAAAAAAAAAAAAA, NC_000015.10:g.63511282_63511283insAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000015.9:g.63803477_63803481del, NC_000015.9:g.63803478_63803481del, NC_000015.9:g.63803479_63803481del, NC_000015.9:g.63803480_63803481del, NC_000015.9:g.63803481del, NC_000015.9:g.63803481dup, NC_000015.9:g.63803480_63803481dup, NC_000015.9:g.63803479_63803481dup, NC_000015.9:g.63803478_63803481dup, NC_000015.9:g.63803477_63803481dup, NC_000015.9:g.63803476_63803481dup, NC_000015.9:g.63803475_63803481dup, NC_000015.9:g.63803474_63803481dup, NC_000015.9:g.63803473_63803481dup, NC_000015.9:g.63803472_63803481dup, NC_000015.9:g.63803471_63803481dup, NC_000015.9:g.63803470_63803481dup, NC_000015.9:g.63803469_63803481dup, NC_000015.9:g.63803468_63803481dup, NC_000015.9:g.63803467_63803481dup, NC_000015.9:g.63803466_63803481dup, NC_000015.9:g.63803481_63803482insAAAAAAAAAAAAAAAAA, NC_000015.9:g.63803481_63803482insAAAAAAAAAAAAAAAAAA, NC_000015.9:g.63803481_63803482insAAAAAAAAAAAAAAAAAAA, NC_000015.9:g.63803481_63803482insAAAAAAAAAAAAAAAAAAAA, NC_000015.9:g.63803481_63803482insAAAAAAAAAAAAAAAAAAAAA, NC_000015.9:g.63803481_63803482insAAAAAAAAAAAAAAAAAAAAAA, NC_000015.9:g.63803481_63803482insAAAAAAAAAAAAAAAAAAAAAAA, NC_000015.9:g.63803481_63803482insAAAAAAAAAAAAAAAAAAAAAAAA, NC_000015.9:g.63803481_63803482insAAAAAAAAAAAAAAAAAAAAAAAAAA

Select item 149118461317.

rs1491184613 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 15:63592759 (GRCh38)
15:63884958 (GRCh37)
Canonical SPDI:: NC_000015.10:63592758:CT:
Gene:: USP3 (Varview), USP3-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000015.10:g.63592759_63592760del, NC_000015.9:g.63884958_63884959del, NG_027784.1:g.407_408del, NM_006537.4:c.*1933_*1934del, NM_006537.3:c.*1933_*1934del, XM_017022765.2:c.*1933_*1934del, XM_017022765.1:c.*1933_*1934del, XM_017022763.2:c.*1933_*1934del, XM_017022763.1:c.*1933_*1934del, XM_017022764.2:c.*1933_*1934del, XM_017022764.1:c.*1933_*1934del, NR_046341.2:n.3796_3797del, NR_046341.1:n.3878_3879del, NR_046342.2:n.3759_3760del, NR_046342.1:n.3841_3842del, NM_001256702.2:c.*1933_*1934del, NM_001256702.1:c.*1933_*1934del, XM_047433393.1:c.*1933_*1934del, XM_047433395.1:c.*1933_*1934del, XM_047433394.1:c.*1933_*1934del

Select item 149117200918.

rs1491172009 has merged into rs527520835 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAA>-,A,AA,AAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA [Show Flanks]
Chromosome:: 15:63578625 (GRCh38)
15:63870824 (GRCh37)
Canonical SPDI:: NC_000015.10:63578613:AAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000015.10:63578613:AAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:63578613:AAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000015.10:63578613:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000015.10:63578613:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000015.10:63578613:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000015.10:63578613:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000015.10:63578613:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000015.10:63578613:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA
Gene:: USP3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAA=0./0 (ALFA)
A=0.00221/37 (TOMMO)
A=0.11721/587 (1000Genomes)
A=0.225/9 (GENOME_DK)
HGVS:: NC_000015.10:g.63578625_63578628del, NC_000015.10:g.63578626_63578628del, NC_000015.10:g.63578627_63578628del, NC_000015.10:g.63578628del, NC_000015.10:g.63578628dup, NC_000015.10:g.63578627_63578628dup, NC_000015.10:g.63578626_63578628dup, NC_000015.10:g.63578625_63578628dup, NC_000015.10:g.63578624_63578628dup, NC_000015.9:g.63870824_63870827del, NC_000015.9:g.63870825_63870827del, NC_000015.9:g.63870826_63870827del, NC_000015.9:g.63870827del, NC_000015.9:g.63870827dup, NC_000015.9:g.63870826_63870827dup, NC_000015.9:g.63870825_63870827dup, NC_000015.9:g.63870824_63870827dup, NC_000015.9:g.63870823_63870827dup

Select item 149112186119.

rs1491121861 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 15:63540271 (GRCh38)
15:63832471 (GRCh37)
Canonical SPDI:: NC_000015.10:63540271:C:CC
Gene:: USP3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.63540272dup, NC_000015.9:g.63832471dup

Select item 149097352320.

rs1490973523 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:63568995 (GRCh38)
15:63861194 (GRCh37)
Canonical SPDI:: NC_000015.10:63568994:G:T
Gene:: USP3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.63568995G>T, NC_000015.9:g.63861194G>T

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